Rh1CG211100

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000467
Physical Location & Seq
Reverse (-)
45570398 .. 45573096
2699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG211100.1

Sequence Viewer

Length: 843 bp
ATGTCTAAAGTTGGATGCCCACATTTCATGCTGTCCCAACCTGAAAGTTGTGCACGTGAATTCGATGAATATAAACAGCCTGGACATCTCCGGAATGAGACTGGAAAGTGTGACAGTGAAAGCTGGGTCAGCGTTTTCGCTCCAAATCTGAAAACTTTCTCTTGGTTGGCTAATTGCATTACTGAGAAATGTTTGATCCACGGCTTTCCTGCCCTGAAAACATCTCACATAAACTGTCAGTGTCCAGACGATCTTAGCATGGCGAAGATTCATAGTGCAGTAAATCTTGTTTGGGCATCATCCCAAGTTCAAAGCCTAGTCATATCCCGCGACTTTCTCCGGGTTTTATCAAAAATCTATCTTGAAGGTGGTGGTCTACTACATCCATTTGTTCAGCTTCAGACCTTGAAAATTCAGACTACTAGTCTGAACAGACATGATATTCCAGGTATAGCTTGTCTATTCAAGATCTCTCCAACTGTCCAGACCATCATAATTGAGATACTTGGTGATAGAGCAAGAGATAATGTTCAGAAATGGTTCGATGATTCGTTGGACAAGACTTATTGCACGGAAGTGCAATACTGGGAAAGTCAAGCTCAGGCTATAAGTGACTTCCTATATCACCTGAAGGTAGCAATGATTCACGTCAAGGGATCCACGATCCATCAGTGTGTGGTTACTCTCGCCAGGTTTTTGCTTGAACATGGAAAAGGCTTGCAAGAAATGGTTCTAAGTTCCCAGCAGCTCAACTCCGACAATCTCTCTCTTTGGGAGAATCAAATAAGGTTACTAGATGGATTCCCTTGGGCATCTGCTGATGTCAGACTTGCAGTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

280

Amino Acids

31.59

Weight (kDa)

6.4

Isoelectric Point (pI)

42.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 376
AccII CGCG 1 cut(s) 330
AccIII TCCGGA 1 cut(s) 90
AciI CCGC 1 cut(s) 328
AclWI GGATC 4 cut(s) 190, 651, 658, 664
AcsI RAATTY 2 cut(s) 59, 411
AcuI CTGAAG 2 cut(s) 383, 650
AcvI CACGTG 1 cut(s) 56
AgsI TTSAA 5 cut(s) 311, 365, 409, 466, 704
AhdI GACNNNNNGTC 1 cut(s) 423
AhlI ACTAGT 1 cut(s) 422
AjiI CACGTC 1 cut(s) 649
AjnI CCWGG 3 cut(s) 79, 445, 689
AleI CACNNNNGTG 1 cut(s) 575
AluBI AGCT 5 cut(s) 123, 397, 455, 599, 748
AluI AGCT 5 cut(s) 123, 397, 455, 599, 748
Alw21I GWGCWC 1 cut(s) 55
Alw26I GTCTC 1 cut(s) 92
Alw44I GTGCAC 1 cut(s) 51
AlwI GGATC 4 cut(s) 190, 651, 658, 664
Aor13HI TCCGGA 1 cut(s) 90
ApaLI GTGCAC 1 cut(s) 51
ApeKI GCWGC 1 cut(s) 745
ApoI RAATTY 2 cut(s) 59, 411
Asp700I GAANNNNTTC 3 cut(s) 155, 539, 729
AsuC2I CCSGG 1 cut(s) 341
AsuHPI GGTGA 2 cut(s) 521, 617
BaeGI GKGCMC 1 cut(s) 55
BamHI GGATCC 1 cut(s) 656
BbrPI CACGTG 1 cut(s) 56
Bbv12I GWGCWC 1 cut(s) 55
BbvI GCAGC 1 cut(s) 757
BccI CCATC 3 cut(s) 497, 675, 791
BceAI ACGGC 1 cut(s) 217
BciT130I CCWGG 3 cut(s) 81, 447, 691
BcnI CCSGG 1 cut(s) 341
BcoDI GTCTC 1 cut(s) 92
BcuI ACTAGT 1 cut(s) 422
BfaI CTAG 3 cut(s) 317, 423, 794
BglII AGATCT 1 cut(s) 468
BisI GCNGC 1 cut(s) 746
BlsI GCNGC 1 cut(s) 747
Bme1390I CCNGG 4 cut(s) 81, 341, 447, 691
BmeRI GACNNNNNGTC 1 cut(s) 423
BmgBI CACGTC 1 cut(s) 649
BmiI GGNNCC 1 cut(s) 658
BmrFI CCNGG 4 cut(s) 81, 341, 447, 691
BmrI ACTGGG 1 cut(s) 595
BmsI GCATC 3 cut(s) 5, 305, 821
BmuI ACTGGG 1 cut(s) 595
Bpu10I CCTNAGC 1 cut(s) 600
BpuMI CCSGG 1 cut(s) 341
BsaAI YACGTR 1 cut(s) 56
BsaJI CCNNGG 2 cut(s) 199, 806
BsaWI WCCGGW 1 cut(s) 90
Bse1I ACTGG 2 cut(s) 106, 590
Bse3DI GCAATG 1 cut(s) 645
BseAI TCCGGA 1 cut(s) 90
BseBI CCWGG 3 cut(s) 81, 447, 691
BseDI CCNNGG 2 cut(s) 199, 806
BseGI GGATG 3 cut(s) 20, 299, 382
BseMI GCAATG 1 cut(s) 645
BseMII CTCAG 2 cut(s) 174, 614
BseNI ACTGG 2 cut(s) 106, 590
BseSI GKGCMC 1 cut(s) 55
BseXI GCAGC 1 cut(s) 757
BseYI CCCAGC 2 cut(s) 123, 741
BsgI GTGCAG 1 cut(s) 297
Bsh1236I CGCG 1 cut(s) 330
BsiHKAI GWGCWC 1 cut(s) 55
BsiSI CCGG 2 cut(s) 91, 340
BslFI GGGAC 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 19
Bsp1286I GDGCHC 1 cut(s) 55
Bsp13I TCCGGA 1 cut(s) 90
Bsp143I GATC 5 cut(s) 195, 250, 468, 656, 663
BspACI CCGC 1 cut(s) 328
BspCNI CTCAG 2 cut(s) 175, 613
BspEI TCCGGA 1 cut(s) 90
BspFNI CGCG 1 cut(s) 330
BspLI GGNNCC 1 cut(s) 658
BspPI GGATC 4 cut(s) 190, 651, 658, 664
BsrDI GCAATG 1 cut(s) 645
BsrI ACTGG 2 cut(s) 106, 590
BssECI CCNNGG 2 cut(s) 199, 806
BssMI GATC 5 cut(s) 195, 250, 468, 656, 663
BssT1I CCWWGG 1 cut(s) 806
Bst2UI CCWGG 3 cut(s) 81, 447, 691
Bst4CI ACNGT 3 cut(s) 116, 236, 481
BstBAI YACGTR 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 719
BstDEI CTNAG 4 cut(s) 183, 254, 600, 734
BstDSI CCRYGG 1 cut(s) 199
BstF5I GGATG 3 cut(s) 20, 299, 382
BstFNI CGCG 1 cut(s) 330
BstKTI GATC 5 cut(s) 198, 253, 471, 659, 666
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 5 cut(s) 195, 250, 468, 656, 663
BstMWI GCNNNNNNNGC 1 cut(s) 129
BstNI CCWGG 3 cut(s) 81, 447, 691
BstSCI CCNGG 4 cut(s) 79, 339, 445, 689
BstSLI GKGCMC 1 cut(s) 55
BstUI CGCG 1 cut(s) 330
BstV1I GCAGC 1 cut(s) 757
BstX2I RGATCY 2 cut(s) 468, 656
BstYI RGATCY 2 cut(s) 468, 656
BtgI CCRYGG 1 cut(s) 199
BtrI CACGTC 1 cut(s) 649
BtsCI GGATG 3 cut(s) 20, 299, 382
BtsIMutI CAGTG 3 cut(s) 121, 245, 677
Cac8I GCNNGC 1 cut(s) 719
CviAII CATG 4 cut(s) 28, 259, 437, 707
DdeI CTNAG 4 cut(s) 183, 254, 600, 734
DpnI GATC 5 cut(s) 197, 252, 470, 658, 665
DpnII GATC 5 cut(s) 195, 250, 468, 656, 663
DriI GACNNNNNGTC 1 cut(s) 423
Eam1105I GACNNNNNGTC 1 cut(s) 423
Eco130I CCWWGG 1 cut(s) 806
Eco57I CTGAAG 2 cut(s) 383, 650
Eco72I CACGTG 1 cut(s) 56
EcoRI GAATTC 1 cut(s) 59
EcoRII CCWGG 3 cut(s) 79, 445, 689
EcoT14I CCWWGG 1 cut(s) 806
ErhI CCWWGG 1 cut(s) 806
FaeI CATG 4 cut(s) 31, 262, 440, 710
FaqI GGGAC 1 cut(s) 19
FatI CATG 4 cut(s) 27, 258, 436, 706
FauI CCCGC 1 cut(s) 335
FblI GTMKAC 1 cut(s) 376
Fnu4HI GCNGC 1 cut(s) 746
FokI GGATG 3 cut(s) 27, 286, 369
Fsp4HI GCNGC 1 cut(s) 746
FspBI CTAG 3 cut(s) 317, 423, 794
GluI GCNGC 1 cut(s) 746
GsaI CCCAGC 2 cut(s) 127, 745
HapII CCGG 2 cut(s) 91, 340
Hin1II CATG 4 cut(s) 31, 262, 440, 710
HinfI GANTC 5 cut(s) 268, 548, 643, 778, 801
HpaII CCGG 2 cut(s) 91, 340
HphI GGTGA 2 cut(s) 521, 617
Hpy166II GTNNAC 2 cut(s) 53, 377
Hpy188I TCNGA 7 cut(s) 150, 402, 417, 429, 534, 757, 827
Hpy188III TCNNGA 5 cut(s) 91, 245, 362, 466, 484
Hpy8I GTNNAC 2 cut(s) 53, 377
HpyAV CCTTC 2 cut(s) 359, 625
HpyCH4III ACNGT 3 cut(s) 116, 236, 481
HpyCH4IV ACGT 2 cut(s) 55, 648
HpyCH4V TGCA 7 cut(s) 53, 177, 278, 570, 580, 721, 833
HpyF10VI GCNNNNNNNGC 1 cut(s) 129
HpyF3I CTNAG 4 cut(s) 183, 254, 600, 734
HpySE526I ACGT 2 cut(s) 55, 648
Hsp92II CATG 4 cut(s) 31, 262, 440, 710
Kpn2I TCCGGA 1 cut(s) 90
Kzo9I GATC 5 cut(s) 195, 250, 468, 656, 663
LmnI GCTCC 1 cut(s) 145
Lsp1109I GCAGC 1 cut(s) 757
LweI GCATC 3 cut(s) 5, 305, 821
MaeI CTAG 3 cut(s) 317, 423, 794
MaeII ACGT 2 cut(s) 55, 648
MaeIII GTNAC 4 cut(s) 110, 611, 679, 789
MalI GATC 5 cut(s) 197, 252, 470, 658, 665
MboI GATC 5 cut(s) 195, 250, 468, 656, 663
MboII GAAGA 1 cut(s) 277
MflI RGATCY 2 cut(s) 468, 656
MhlI GDGCHC 1 cut(s) 55
MluCI AATT 4 cut(s) 59, 172, 411, 495
MmeI TCCRAC 3 cut(s) 500, 534, 780
MroI TCCGGA 1 cut(s) 90
MroXI GAANNNNTTC 3 cut(s) 155, 539, 729
MseI TTAA 1 cut(s) 841
MslI CAYNNNNRTG 2 cut(s) 575, 672
MspI CCGG 2 cut(s) 91, 340
MspR9I CCNGG 4 cut(s) 81, 341, 447, 691
MvaI CCWGG 3 cut(s) 81, 447, 691
MvnI CGCG 1 cut(s) 330
MwoI GCNNNNNNNGC 1 cut(s) 129
NciI CCSGG 1 cut(s) 341
NdeII GATC 5 cut(s) 195, 250, 468, 656, 663
NlaIII CATG 4 cut(s) 31, 262, 440, 710
NlaIV GGNNCC 1 cut(s) 658
NmuCI GTSAC 2 cut(s) 110, 611
OliI CACNNNNGTG 1 cut(s) 575
PdmI GAANNNNTTC 3 cut(s) 155, 539, 729
PfeI GAWTC 5 cut(s) 268, 548, 643, 778, 801
PkrI GCNGC 1 cut(s) 747
PmaCI CACGTG 1 cut(s) 56
PmlI CACGTG 1 cut(s) 56
Ppu21I YACGTR 1 cut(s) 56
Psp6I CCWGG 3 cut(s) 79, 445, 689
PspCI CACGTG 1 cut(s) 56
PspFI CCCAGC 2 cut(s) 123, 741
PspGI CCWGG 3 cut(s) 79, 445, 689
PspN4I GGNNCC 1 cut(s) 658
PsuI RGATCY 2 cut(s) 468, 656
RseI CAYNNNNRTG 2 cut(s) 575, 672
SaqAI TTAA 1 cut(s) 841
SatI GCNGC 1 cut(s) 746
Sau3AI GATC 5 cut(s) 195, 250, 468, 656, 663
ScrFI CCNGG 4 cut(s) 81, 341, 447, 691
SduI GDGCHC 1 cut(s) 55
SfaNI GCATC 3 cut(s) 5, 305, 821
SmiMI CAYNNNNRTG 2 cut(s) 575, 672
SpeI ACTAGT 1 cut(s) 422
Sse9I AATT 4 cut(s) 59, 172, 411, 495
SsiI CCGC 1 cut(s) 328
SspMI CTAG 3 cut(s) 317, 423, 794
StyD4I CCNGG 4 cut(s) 79, 339, 445, 689
StyI CCWWGG 1 cut(s) 806
TaaI ACNGT 3 cut(s) 116, 236, 481
TaiI ACGT 2 cut(s) 58, 651
TaqI TCGA 2 cut(s) 63, 543
TasI AATT 4 cut(s) 59, 172, 411, 495
TfiI GAWTC 5 cut(s) 268, 548, 643, 778, 801
Tru1I TTAA 1 cut(s) 841
Tru9I TTAA 1 cut(s) 841
TscAI CASTG 3 cut(s) 121, 245, 677
TseFI GTSAC 2 cut(s) 110, 611
TseI GCWGC 1 cut(s) 745
Tsp45I GTSAC 2 cut(s) 110, 611
TspDTI ATGAA 3 cut(s) 16, 81, 260
TspGWI ACGGA 1 cut(s) 587
TspRI CASTG 3 cut(s) 121, 245, 677
VneI GTGCAC 1 cut(s) 51
XapI RAATTY 2 cut(s) 59, 411
XmiI GTMKAC 1 cut(s) 376
XmnI GAANNNNTTC 3 cut(s) 155, 539, 729
XspI CTAG 3 cut(s) 317, 423, 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.