Rroxscaffold_1G00041500

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000467
Physical Location & Seq
Forward (+)
59385307 .. 59386320
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00041500.1

Sequence Viewer

Length: 1014 bp
ATGTGGGATGTATATATTCTCAACAATGTTGTCTGGTCTTTTCTCCTTTCACTCCAAGATTTGTCTCTAGCTCATGTGGATTTCTCGGATAGTGCTTTGGGTGTGGATTTATTTTCTGGTTCTTCATTCCCTTTTCTCAAAAAATTGAATATAGAGCGGTGTAGAGGAATGACTGCTCTCAAAATTTGCTGCCCGAACCAAAAAGTTGTATACGTTTTCAGAATGGATCTATATAGCATGGACATCTCTGGAATGAGACTAGAGAAGTTGTCTTGTGTTGAAAATTGCATCGATGGTTGGGTCAACATTTTTTCCCCGAATCTACAATACTTATATTGGGGCAATGCAACAACTGAGAAGTGTTCCATCCAGAGCTTTCCAAAGCCCAAAAGATCTTCCCTGAGCTATTCGTTTCGGTTCGGCATTACAACAACAAAGATTTTTCATAAAAGTGTTATCAATCTTCTTTGCCATTCATCCCAAGCTGAGATACTTGGTATATTTGATGACTACCTCGAGATTCTATCAGACATTTATACTGAATTTGGTGGTGTACCTTTCTCATTTTTCAAACTTGAAACCTTGAGAATTGGGTCCACAATGAAGCAAAGATATATCCCGGGAATAGCATGCCTGTTGAAGAGCTCTCCCTTACTTAACACCCTCTACTTTGAATTTTACTGTTTCGAAGAAAATGGTAAGTGGAATAACATTATGTTGGATAATGGCAATTGCACTCAAGAGCAATACTGGGAAACTCAGGCTCAACATTTGCTCCCCTTTCTTAGTCACCTAAAGGTGGTCGACATTGGCCTTGGTAACATGATCTCTGAAAGTGCAATCACTTTTGCAAAGTTTTTGCTTAAATATGGAAGAGGCCTGCAAAAAATGACTCTTAGCTTTTGGAGGAGAGGAAGTTCACTTTCTCCCAATTCGCTAAATGATACCATTGATTTATTAAAGGGTTTCCCCCGGGCATCTGCAGATGTTGAGTTCTCAAGATTCTGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

337

Amino Acids

38.63

Weight (kDa)

7.48

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 157
AccI GTMKAC 2 cut(s) 210, 804
AciI CCGC 1 cut(s) 157
AclWI GGATC 1 cut(s) 234
AcsI RAATTY 3 cut(s) 183, 542, 674
AfaI GTAC 1 cut(s) 555
AfiI CCNNNNNNNGG 1 cut(s) 799
AgsI TTSAA 6 cut(s) 148, 281, 571, 578, 640, 674
AloI GAACNNNNNNTCC 2 cut(s) 901, 933
AluBI AGCT 6 cut(s) 71, 375, 405, 485, 645, 900
AluI AGCT 6 cut(s) 71, 375, 405, 485, 645, 900
Alw21I GWGCWC 1 cut(s) 647
Alw26I GTCTC 2 cut(s) 69, 250
AlwI GGATC 1 cut(s) 234
Ama87I CYCGRG 3 cut(s) 515, 619, 972
AoxI GGCC 2 cut(s) 811, 877
ApeKI GCWGC 1 cut(s) 189
ApoI RAATTY 3 cut(s) 183, 542, 674
AspS9I GGNCC 1 cut(s) 594
AsuC2I CCSGG 4 cut(s) 620, 621, 973, 974
AsuHPI GGTGA 1 cut(s) 782
AsuII TTCGAA 1 cut(s) 687
AvaI CYCGRG 3 cut(s) 515, 619, 972
AvaII GGWCC 1 cut(s) 594
BanII GRGCYC 1 cut(s) 647
Bbv12I GWGCWC 1 cut(s) 647
BbvI GCAGC 1 cut(s) 176
BccI CCATC 2 cut(s) 287, 374
BcnI CCSGG 4 cut(s) 620, 621, 973, 974
BcoDI GTCTC 2 cut(s) 69, 250
BfaI CTAG 2 cut(s) 68, 260
BfmI CTRYAG 1 cut(s) 981
BglII AGATCT 1 cut(s) 392
BisI GCNGC 1 cut(s) 190
BlsI GCNGC 1 cut(s) 191
Bme1390I CCNGG 4 cut(s) 620, 621, 973, 974
Bme18I GGWCC 1 cut(s) 594
BmeT110I CYCGRG 3 cut(s) 515, 619, 972
BmgT120I GGNCC 1 cut(s) 594
BmiI GGNNCC 1 cut(s) 595
BmrFI CCNGG 4 cut(s) 620, 621, 973, 974
BmrI ACTGGG 1 cut(s) 760
BmsI GCATC 2 cut(s) 297, 986
BmuI ACTGGG 1 cut(s) 760
Bpu10I CCTNAGC 1 cut(s) 401
Bpu14I TTCGAA 1 cut(s) 687
BpuEI CTTGAG 3 cut(s) 604, 723, 982
BpuMI CCSGG 4 cut(s) 620, 621, 973, 974
Bsa29I ATCGAT 1 cut(s) 291
BsaJI CCNNGG 4 cut(s) 619, 814, 971, 972
BsaXI ACNNNNNCTCC 4 cut(s) 759, 789, 901, 931
Bsc4I CCNNNNNNNGG 1 cut(s) 799
Bse1I ACTGG 1 cut(s) 755
Bse3DI GCAATG 1 cut(s) 349
BseCI ATCGAT 1 cut(s) 291
BseDI CCNNGG 4 cut(s) 619, 814, 971, 972
BseGI GGATG 3 cut(s) 13, 366, 476
BseLI CCNNNNNNNGG 1 cut(s) 799
BseMI GCAATG 1 cut(s) 349
BseMII CTCAG 4 cut(s) 345, 392, 477, 773
BseNI ACTGG 1 cut(s) 755
BseRI GAGGAG 1 cut(s) 922
BseXI GCAGC 1 cut(s) 176
BshFI GGCC 2 cut(s) 813, 879
BshVI ATCGAT 1 cut(s) 291
BsiHKAI GWGCWC 1 cut(s) 647
BsiHKCI CYCGRG 3 cut(s) 515, 619, 972
BsiSI CCGG 2 cut(s) 620, 973
BslI CCNNNNNNNGG 1 cut(s) 799
BsmAI GTCTC 2 cut(s) 69, 250
BsnI GGCC 2 cut(s) 813, 879
BsoBI CYCGRG 3 cut(s) 515, 619, 972
Bsp119I TTCGAA 1 cut(s) 687
Bsp1286I GDGCHC 1 cut(s) 647
Bsp143I GATC 3 cut(s) 226, 392, 825
BspACI CCGC 1 cut(s) 157
BspANI GGCC 2 cut(s) 813, 879
BspCNI CTCAG 4 cut(s) 346, 393, 478, 772
BspDI ATCGAT 1 cut(s) 291
BspLI GGNNCC 1 cut(s) 595
BspMAI CTGCAG 1 cut(s) 985
BspPI GGATC 1 cut(s) 234
BspQI GCTCTTC 1 cut(s) 635
BspT104I TTCGAA 1 cut(s) 687
BsrBI CCGCTC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 349
BsrI ACTGG 1 cut(s) 755
BssECI CCNNGG 4 cut(s) 619, 814, 971, 972
BssMI GATC 3 cut(s) 226, 392, 825
BssNAI GTATAC 1 cut(s) 211
BssT1I CCWWGG 1 cut(s) 814
Bst1107I GTATAC 1 cut(s) 211
Bst4CI ACNGT 1 cut(s) 683
Bst6I CTCTTC 2 cut(s) 635, 868
BstBI TTCGAA 1 cut(s) 687
BstC8I GCNNGC 2 cut(s) 631, 881
BstDEI CTNAG 6 cut(s) 354, 401, 486, 759, 785, 896
BstF5I GGATG 3 cut(s) 13, 366, 476
BstKTI GATC 3 cut(s) 229, 395, 828
BstMAI GTCTC 2 cut(s) 69, 250
BstMBI GATC 3 cut(s) 226, 392, 825
BstNSI RCATGY 1 cut(s) 633
BstSCI CCNGG 4 cut(s) 618, 619, 971, 972
BstSFI CTRYAG 1 cut(s) 981
BstV1I GCAGC 1 cut(s) 176
BstX2I RGATCY 2 cut(s) 226, 392
BstYI RGATCY 2 cut(s) 226, 392
BstZ17I GTATAC 1 cut(s) 211
Bsu15I ATCGAT 1 cut(s) 291
BsuRI GGCC 2 cut(s) 813, 879
BsuTUI ATCGAT 1 cut(s) 291
BtsCI GGATG 3 cut(s) 13, 366, 476
Cac8I GCNNGC 2 cut(s) 631, 881
Cfr13I GGNCC 1 cut(s) 594
Cfr9I CCCGGG 2 cut(s) 619, 972
ClaI ATCGAT 1 cut(s) 291
Csp6I GTAC 1 cut(s) 554
CviAII CATG 4 cut(s) 74, 238, 630, 823
CviQI GTAC 1 cut(s) 554
DdeI CTNAG 6 cut(s) 354, 401, 486, 759, 785, 896
DpnI GATC 3 cut(s) 228, 394, 827
DpnII GATC 3 cut(s) 226, 392, 825
Eam1104I CTCTTC 2 cut(s) 635, 868
EarI CTCTTC 2 cut(s) 635, 868
Ecl136II GAGCTC 1 cut(s) 645
Eco130I CCWWGG 1 cut(s) 814
Eco147I AGGCCT 1 cut(s) 879
Eco24I GRGCYC 1 cut(s) 647
Eco47I GGWCC 1 cut(s) 594
Eco53kI GAGCTC 1 cut(s) 645
Eco88I CYCGRG 3 cut(s) 515, 619, 972
EcoICRI GAGCTC 1 cut(s) 645
EcoT14I CCWWGG 1 cut(s) 814
EcoT38I GRGCYC 1 cut(s) 647
ErhI CCWWGG 1 cut(s) 814
FaeI CATG 4 cut(s) 77, 241, 633, 826
FatI CATG 4 cut(s) 73, 237, 629, 822
FblI GTMKAC 2 cut(s) 210, 804
Fnu4HI GCNGC 1 cut(s) 190
FokI GGATG 3 cut(s) 20, 353, 463
FriOI GRGCYC 1 cut(s) 647
Fsp4HI GCNGC 1 cut(s) 190
FspBI CTAG 2 cut(s) 68, 260
GluI GCNGC 1 cut(s) 190
HaeIII GGCC 2 cut(s) 813, 879
HapII CCGG 2 cut(s) 620, 973
Hin1II CATG 4 cut(s) 77, 241, 633, 826
HincII GTYRAC 2 cut(s) 304, 805
HindII GTYRAC 2 cut(s) 304, 805
HinfI GANTC 4 cut(s) 319, 520, 892, 1002
HpaII CCGG 2 cut(s) 620, 973
HphI GGTGA 1 cut(s) 782
Hpy166II GTNNAC 6 cut(s) 211, 304, 554, 597, 805, 920
Hpy188I TCNGA 4 cut(s) 88, 221, 529, 832
Hpy188III TCNNGA 5 cut(s) 249, 370, 517, 740, 999
Hpy8I GTNNAC 6 cut(s) 211, 304, 554, 597, 805, 920
HpyCH4III ACNGT 1 cut(s) 683
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 7 cut(s) 288, 347, 735, 839, 851, 883, 983
HpyF3I CTNAG 6 cut(s) 354, 401, 486, 759, 785, 896
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 4 cut(s) 77, 241, 633, 826
Kzo9I GATC 3 cut(s) 226, 392, 825
LguI GCTCTTC 1 cut(s) 635
LmnI GCTCC 1 cut(s) 780
Lsp1109I GCAGC 1 cut(s) 176
LweI GCATC 2 cut(s) 297, 986
MaeI CTAG 2 cut(s) 68, 260
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 2 cut(s) 788, 818
MalI GATC 3 cut(s) 228, 394, 827
MbiI CCGCTC 1 cut(s) 157
MboI GATC 3 cut(s) 226, 392, 825
MboII GAAGA 6 cut(s) 114, 387, 455, 652, 701, 885
MfeI CAATTG 1 cut(s) 730
MflI RGATCY 2 cut(s) 226, 392
MhlI GDGCHC 1 cut(s) 647
MluCI AATT 8 cut(s) 143, 183, 283, 542, 588, 674, 730, 931
MlyI GAGTC 1 cut(s) 886
MmeI TCCRAC 1 cut(s) 699
MnlI CCTC 6 cut(s) 158, 524, 674, 869, 900, 905
MseI TTAA 3 cut(s) 657, 864, 959
MslI CAYNNNNRTG 1 cut(s) 450
MspI CCGG 2 cut(s) 620, 973
MspR9I CCNGG 4 cut(s) 620, 621, 973, 974
MunI CAATTG 1 cut(s) 730
NciI CCSGG 4 cut(s) 620, 621, 973, 974
NdeII GATC 3 cut(s) 226, 392, 825
NlaIII CATG 4 cut(s) 77, 241, 633, 826
NlaIV GGNNCC 1 cut(s) 595
NmuCI GTSAC 1 cut(s) 788
NspI RCATGY 1 cut(s) 633
NspV TTCGAA 1 cut(s) 687
PaeI GCATGC 1 cut(s) 633
PaeR7I CTCGAG 1 cut(s) 515
PceI AGGCCT 1 cut(s) 879
PciSI GCTCTTC 1 cut(s) 635
PfeI GAWTC 3 cut(s) 319, 520, 1002
PkrI GCNGC 1 cut(s) 191
PleI GAGTC 1 cut(s) 886
PpsI GAGTC 1 cut(s) 886
Psp124BI GAGCTC 1 cut(s) 647
PspN4I GGNNCC 1 cut(s) 595
PspPI GGNCC 1 cut(s) 594
PstI CTGCAG 1 cut(s) 985
PsuI RGATCY 2 cut(s) 226, 392
RsaI GTAC 1 cut(s) 555
RsaNI GTAC 1 cut(s) 554
RseI CAYNNNNRTG 1 cut(s) 450
SacI GAGCTC 1 cut(s) 647
SalI GTCGAC 1 cut(s) 803
SapI GCTCTTC 1 cut(s) 635
SaqAI TTAA 3 cut(s) 657, 864, 959
SatI GCNGC 1 cut(s) 190
Sau3AI GATC 3 cut(s) 226, 392, 825
Sau96I GGNCC 1 cut(s) 594
SchI GAGTC 1 cut(s) 886
ScrFI CCNGG 4 cut(s) 620, 621, 973, 974
SduI GDGCHC 1 cut(s) 647
SfaNI GCATC 2 cut(s) 297, 986
SfcI CTRYAG 1 cut(s) 981
Sfr274I CTCGAG 1 cut(s) 515
SfuI TTCGAA 1 cut(s) 687
SinI GGWCC 1 cut(s) 594
SlaI CTCGAG 1 cut(s) 515
SmaI CCCGGG 2 cut(s) 621, 974
SmiMI CAYNNNNRTG 1 cut(s) 450
SmlI CTYRAG 4 cut(s) 515, 583, 738, 997
SmoI CTYRAG 4 cut(s) 515, 583, 738, 997
SphI GCATGC 1 cut(s) 633
Sse9I AATT 8 cut(s) 143, 183, 283, 542, 588, 674, 730, 931
SseBI AGGCCT 1 cut(s) 879
SsiI CCGC 1 cut(s) 157
SspMI CTAG 2 cut(s) 68, 260
SstI GAGCTC 1 cut(s) 647
StuI AGGCCT 1 cut(s) 879
StyD4I CCNGG 4 cut(s) 618, 619, 971, 972
StyI CCWWGG 1 cut(s) 814
TaaI ACNGT 1 cut(s) 683
TaiI ACGT 1 cut(s) 216
TaqI TCGA 4 cut(s) 291, 516, 687, 804
TasI AATT 8 cut(s) 143, 183, 283, 542, 588, 674, 730, 931
TfiI GAWTC 3 cut(s) 319, 520, 1002
Tru1I TTAA 3 cut(s) 657, 864, 959
Tru9I TTAA 3 cut(s) 657, 864, 959
TseFI GTSAC 1 cut(s) 788
TseI GCWGC 1 cut(s) 189
Tsp45I GTSAC 1 cut(s) 788
TspDTI ATGAA 4 cut(s) 114, 434, 465, 617
TspMI CCCGGG 2 cut(s) 619, 972
VpaK11BI GGWCC 1 cut(s) 594
XapI RAATTY 3 cut(s) 183, 542, 674
XceI RCATGY 1 cut(s) 633
XhoI CTCGAG 1 cut(s) 515
XmaI CCCGGG 2 cut(s) 619, 972
XmiI GTMKAC 2 cut(s) 210, 804
XspI CTAG 2 cut(s) 68, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.