Rh4CG167400

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000467
Physical Location & Seq
Reverse (-)
36838046 .. 36839236
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG167400.1

Sequence Viewer

Length: 1191 bp
ATGGGAAACATATTTTCTTACTGTTTCACTTACAAGGAAGCTTCAGATCGGTTGAGCGAGGAGGAAGAAGAAAACAAGCGCCATGAGCAACGAGACAAAGCTTCAGTTGACAGAGTCAGCGGCCTCCCAGATCGGTGCATTTATGAGGAGGAAGAAAACAAGCACCATGAGAAGAGAAACAGTACTAACTTAGCTGACAGAATCAGTGATCTCCCAGATGATATGTTGCATCTCATACTCTCGTTCCTACCTTTCAAATCCGTCCGGCAAACCAGTGTCTTATCTCGAAGATGGAGTCATGTATGGTCTTCCTATCCCATCTTTGACTTCTACGACATTTTTACTGGTAATGAAGTTCTTCATCACCAGACGAGAGCAAGGATCATAAACACAGTATTGGCTCGCCAGGACGAAAACTATAATATAATGTGTCCATGCCTCAAAATTCCCGTCCCAAGCGGCAGTTTAGGTCAATTTCGAAGAGTTGGGGAAGATCCAAACGATTCTTGTTTTGCTAGGGTTGAGCAACTAGTACTGGACATCTCCTTGAGTGGTGAAAACACATATGTTTTGCCTCAATGCCAACTTAAGTGCCAATCACTAAGGAGTAGTAGCTGTGGGAATTCAAAGGCATGGCTAGGGTTTCCCTCTTCTTATGTTGCTTGGTCTTACCTCCTTTCACTTCAATCTTTGTCTCTAAGTCATATGGATTTCTTGGATAAAAGTCATAGTAGCGCTTTGGATGTGGATTTATTTTCTGGTTCTTCGCTCCCTTGTCTTGAAAAATTGGAGATAGAGATGTGCAAAGGAATGGATGATCTCAAAATTTGCTGTCCGAACCTAAAATATATACGAGTTTTCGGAATGAATTTAAAGAGTATAGACATCTCCGGAATGAGACTAGAGGATGTAAGAGTCTCGTTTTGTTTTGTAAATTGCATCGATGGAAGTGGGGTTGACATTTTCGCCCCGAATCTAAAATCCTTTGCTTGGGTGGGTAATGGCATTACTGACAAGTCTTCGATCCAGAGCTTTCCTGTGCTCAAAAGGTCTGAATTTCTTTGGCCCCACATTACAACGAAGAAGATTTCTAATAACAGTGTTATCGATCTTTTTTCGTCTTCATCCCAAGTTGAAGAACTTACAATAGCTTTTGACTTTCCTCCAGATTCTATCAGAAATTTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

396

Amino Acids

45.11

Weight (kDa)

5.54

Isoelectric Point (pI)

52.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 68 - 107 1.7e-09 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 890
AciI CCGC 2 cut(s) 120, 459
AclWI GGATC 3 cut(s) 389, 488, 1018
AcsI RAATTY 6 cut(s) 444, 622, 825, 868, 1055, 1180
AcuI CTGAAG 2 cut(s) 27, 87
AfaI GTAC 2 cut(s) 184, 534
AfeI AGCGCT 1 cut(s) 736
AfiI CCNNNNNNNGG 1 cut(s) 990
AflII CTTAAG 1 cut(s) 587
AgsI TTSAA 5 cut(s) 256, 627, 686, 782, 1136
AhlI ACTAGT 1 cut(s) 529
AjnI CCWGG 1 cut(s) 405
AluBI AGCT 6 cut(s) 41, 101, 194, 615, 1032, 1151
AluI AGCT 6 cut(s) 41, 101, 194, 615, 1032, 1151
Alw21I GWGCWC 1 cut(s) 1044
Alw26I GTCTC 4 cut(s) 87, 699, 892, 922
AlwI GGATC 3 cut(s) 389, 488, 1018
Aor13HI TCCGGA 1 cut(s) 890
Aor51HI AGCGCT 1 cut(s) 736
AoxI GGCC 2 cut(s) 121, 1064
ApoI RAATTY 6 cut(s) 444, 622, 825, 868, 1055, 1180
ArsI GACNNNNNNTTYG 4 cut(s) 280, 312, 435, 467
Asp700I GAANNNNTTC 1 cut(s) 357
AspLEI GCGC 2 cut(s) 81, 737
AspS9I GGNCC 1 cut(s) 1065
AsuHPI GGTGA 2 cut(s) 356, 566
AsuII TTCGAA 1 cut(s) 478
BbsI GAAGAC 3 cut(s) 300, 1011, 1113
Bbv12I GWGCWC 1 cut(s) 1044
BccI CCATC 3 cut(s) 285, 326, 938
BciT130I CCWGG 1 cut(s) 407
BcoDI GTCTC 4 cut(s) 87, 699, 892, 922
BcuI ACTAGT 1 cut(s) 529
BfaI CTAG 4 cut(s) 516, 530, 638, 902
BfoI RGCGCY 2 cut(s) 82, 738
BfrI CTTAAG 1 cut(s) 587
BisI GCNGC 2 cut(s) 121, 460
BlsI GCNGC 2 cut(s) 122, 461
BmcAI AGTACT 2 cut(s) 184, 534
Bme1390I CCNGG 1 cut(s) 407
BmgT120I GGNCC 1 cut(s) 1065
BmiI GGNNCC 1 cut(s) 1067
BmrFI CCNGG 1 cut(s) 407
BmsI GCATC 2 cut(s) 238, 948
BpiI GAAGAC 3 cut(s) 300, 1011, 1113
BpmI CTGGAG 1 cut(s) 1149
Bpu14I TTCGAA 1 cut(s) 478
BpuEI CTTGAG 1 cut(s) 568
Bsa29I ATCGAT 2 cut(s) 942, 1107
BsaWI WCCGGW 1 cut(s) 890
Bsc4I CCNNNNNNNGG 1 cut(s) 990
Bse1I ACTGG 3 cut(s) 273, 349, 540
BseAI TCCGGA 1 cut(s) 890
BseBI CCWGG 1 cut(s) 407
BseCI ATCGAT 2 cut(s) 942, 1107
BseGI GGATG 4 cut(s) 748, 820, 913, 1124
BseLI CCNNNNNNNGG 1 cut(s) 990
BseNI ACTGG 3 cut(s) 273, 349, 540
BseRI GAGGAG 2 cut(s) 74, 161
BshFI GGCC 2 cut(s) 123, 1066
BshVI ATCGAT 2 cut(s) 942, 1107
BsiHKAI GWGCWC 1 cut(s) 1044
BsiSI CCGG 2 cut(s) 265, 891
BslFI GGGAC 1 cut(s) 437
BslI CCNNNNNNNGG 1 cut(s) 990
BsmAI GTCTC 4 cut(s) 87, 699, 892, 922
BsmFI GGGAC 1 cut(s) 437
BsnI GGCC 2 cut(s) 123, 1066
Bsp119I TTCGAA 1 cut(s) 478
Bsp1286I GDGCHC 1 cut(s) 1044
Bsp13I TCCGGA 1 cut(s) 890
Bsp143I GATC 8 cut(s) 46, 130, 208, 381, 493, 817, 1023, 1108
BspACI CCGC 2 cut(s) 120, 459
BspANI GGCC 2 cut(s) 123, 1066
BspDI ATCGAT 2 cut(s) 942, 1107
BspEI TCCGGA 1 cut(s) 890
BspLI GGNNCC 1 cut(s) 1067
BspPI GGATC 3 cut(s) 389, 488, 1018
BspT104I TTCGAA 1 cut(s) 478
BspTI CTTAAG 1 cut(s) 587
BsrI ACTGG 3 cut(s) 273, 349, 540
BssMI GATC 8 cut(s) 46, 130, 208, 381, 493, 817, 1023, 1108
Bst2UI CCWGG 1 cut(s) 407
Bst4CI ACNGT 4 cut(s) 23, 182, 394, 1100
Bst6I CTCTTC 3 cut(s) 167, 475, 655
BstAFI CTTAAG 1 cut(s) 587
BstBI TTCGAA 1 cut(s) 478
BstC8I GCNNGC 1 cut(s) 403
BstDEI CTNAG 3 cut(s) 190, 602, 698
BstF5I GGATG 4 cut(s) 748, 820, 913, 1124
BstH2I RGCGCY 2 cut(s) 82, 738
BstHHI GCGC 2 cut(s) 81, 737
BstKTI GATC 8 cut(s) 49, 133, 211, 384, 496, 820, 1026, 1111
BstMAI GTCTC 4 cut(s) 87, 699, 892, 922
BstMBI GATC 8 cut(s) 46, 130, 208, 381, 493, 817, 1023, 1108
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstNI CCWGG 1 cut(s) 407
BstSCI CCNGG 1 cut(s) 405
BstV2I GAAGAC 3 cut(s) 300, 1011, 1113
BstX2I RGATCY 1 cut(s) 493
BstYI RGATCY 1 cut(s) 493
Bsu15I ATCGAT 2 cut(s) 942, 1107
BsuRI GGCC 2 cut(s) 123, 1066
BsuTUI ATCGAT 2 cut(s) 942, 1107
BtsCI GGATG 4 cut(s) 748, 820, 913, 1124
BtsIMutI CAGTG 3 cut(s) 211, 280, 1105
Cac8I GCNNGC 1 cut(s) 403
CfoI GCGC 2 cut(s) 81, 737
Cfr13I GGNCC 1 cut(s) 1065
ClaI ATCGAT 2 cut(s) 942, 1107
Csp6I GTAC 2 cut(s) 183, 533
CviAII CATG 5 cut(s) 83, 167, 299, 435, 633
CviQI GTAC 2 cut(s) 183, 533
DdeI CTNAG 3 cut(s) 190, 602, 698
DpnI GATC 8 cut(s) 48, 132, 210, 383, 495, 819, 1025, 1110
DpnII GATC 8 cut(s) 46, 130, 208, 381, 493, 817, 1023, 1108
DraI TTTAAA 1 cut(s) 873
Eam1104I CTCTTC 3 cut(s) 167, 475, 655
EarI CTCTTC 3 cut(s) 167, 475, 655
Eco47III AGCGCT 1 cut(s) 736
Eco57I CTGAAG 2 cut(s) 27, 87
EcoRI GAATTC 1 cut(s) 622
EcoRII CCWGG 1 cut(s) 405
FaeI CATG 5 cut(s) 86, 170, 302, 438, 636
FaqI GGGAC 1 cut(s) 437
FatI CATG 5 cut(s) 82, 166, 298, 434, 632
FauNDI CATATG 2 cut(s) 565, 705
Fnu4HI GCNGC 2 cut(s) 121, 460
FokI GGATG 4 cut(s) 755, 827, 920, 1111
Fsp4HI GCNGC 2 cut(s) 121, 460
FspBI CTAG 4 cut(s) 516, 530, 638, 902
GlaI GCGC 2 cut(s) 80, 736
GluI GCNGC 2 cut(s) 121, 460
GsuI CTGGAG 1 cut(s) 1149
HaeII RGCGCY 2 cut(s) 82, 738
HaeIII GGCC 2 cut(s) 123, 1066
HapII CCGG 2 cut(s) 265, 891
HhaI GCGC 2 cut(s) 81, 737
Hin1II CATG 5 cut(s) 86, 170, 302, 438, 636
Hin6I GCGC 2 cut(s) 79, 735
HinP1I GCGC 2 cut(s) 79, 735
HincII GTYRAC 2 cut(s) 109, 958
HindII GTYRAC 2 cut(s) 109, 958
HindIII AAGCTT 2 cut(s) 39, 99
HinfI GANTC 7 cut(s) 114, 201, 295, 503, 915, 973, 1169
HpaII CCGG 2 cut(s) 265, 891
HphI GGTGA 2 cut(s) 356, 566
Hpy166II GTNNAC 2 cut(s) 109, 958
Hpy188I TCNGA 5 cut(s) 46, 837, 863, 1054, 1178
Hpy188III TCNNGA 5 cut(s) 285, 779, 891, 1027, 1166
Hpy8I GTNNAC 2 cut(s) 109, 958
HpyCH4III ACNGT 4 cut(s) 23, 182, 394, 1100
HpyCH4V TGCA 4 cut(s) 138, 229, 804, 939
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
HpyF3I CTNAG 3 cut(s) 190, 602, 698
Hsp92II CATG 5 cut(s) 86, 170, 302, 438, 636
HspAI GCGC 2 cut(s) 79, 735
Kpn2I TCCGGA 1 cut(s) 890
Kzo9I GATC 8 cut(s) 46, 130, 208, 381, 493, 817, 1023, 1108
LmnI GCTCC 1 cut(s) 774
LweI GCATC 2 cut(s) 238, 948
MaeI CTAG 4 cut(s) 516, 530, 638, 902
MalI GATC 8 cut(s) 48, 132, 210, 383, 495, 819, 1025, 1110
MboI GATC 8 cut(s) 46, 130, 208, 381, 493, 817, 1023, 1108
MflI RGATCY 1 cut(s) 493
MhlI GDGCHC 1 cut(s) 1044
MluCI AATT 9 cut(s) 444, 473, 622, 785, 825, 868, 934, 1055, 1180
MlyI GAGTC 3 cut(s) 123, 304, 924
MroI TCCGGA 1 cut(s) 890
MroXI GAANNNNTTC 1 cut(s) 357
MseI TTAA 2 cut(s) 588, 872
MspA1I CMGCKG 1 cut(s) 120
MspCI CTTAAG 1 cut(s) 587
MspI CCGG 2 cut(s) 265, 891
MspR9I CCNGG 1 cut(s) 407
MvaI CCWGG 1 cut(s) 407
MwoI GCNNNNNNNGC 1 cut(s) 85
NdeI CATATG 2 cut(s) 565, 705
NdeII GATC 8 cut(s) 46, 130, 208, 381, 493, 817, 1023, 1108
NlaIII CATG 5 cut(s) 86, 170, 302, 438, 636
NlaIV GGNNCC 1 cut(s) 1067
NspV TTCGAA 1 cut(s) 478
PdmI GAANNNNTTC 1 cut(s) 357
PfeI GAWTC 4 cut(s) 201, 503, 973, 1169
PflFI GACNNNGTC 1 cut(s) 113
PkrI GCNGC 2 cut(s) 122, 461
PleI GAGTC 3 cut(s) 122, 303, 923
PpsI GAGTC 3 cut(s) 122, 303, 923
Psp6I CCWGG 1 cut(s) 405
PspGI CCWGG 1 cut(s) 405
PspN4I GGNNCC 1 cut(s) 1067
PspPI GGNCC 1 cut(s) 1065
PsuI RGATCY 1 cut(s) 493
PsyI GACNNNGTC 1 cut(s) 113
RsaI GTAC 2 cut(s) 184, 534
RsaNI GTAC 2 cut(s) 183, 533
SaqAI TTAA 2 cut(s) 588, 872
SatI GCNGC 2 cut(s) 121, 460
Sau3AI GATC 8 cut(s) 46, 130, 208, 381, 493, 817, 1023, 1108
Sau96I GGNCC 1 cut(s) 1065
ScaI AGTACT 2 cut(s) 184, 534
SchI GAGTC 3 cut(s) 123, 304, 924
ScrFI CCNGG 1 cut(s) 407
SduI GDGCHC 1 cut(s) 1044
SfaNI GCATC 2 cut(s) 238, 948
SfuI TTCGAA 1 cut(s) 478
SmlI CTYRAG 2 cut(s) 547, 587
SmoI CTYRAG 2 cut(s) 547, 587
SpeI ACTAGT 1 cut(s) 529
Sse9I AATT 9 cut(s) 444, 473, 622, 785, 825, 868, 934, 1055, 1180
SsiI CCGC 2 cut(s) 120, 459
SspMI CTAG 4 cut(s) 516, 530, 638, 902
StyD4I CCNGG 1 cut(s) 405
TaaI ACNGT 4 cut(s) 23, 182, 394, 1100
TaqI TCGA 5 cut(s) 286, 478, 942, 1022, 1107
TasI AATT 9 cut(s) 444, 473, 622, 785, 825, 868, 934, 1055, 1180
TatI WGTACW 2 cut(s) 182, 532
TauI GCSGC 2 cut(s) 123, 462
TfiI GAWTC 4 cut(s) 201, 503, 973, 1169
Tru1I TTAA 2 cut(s) 588, 872
Tru9I TTAA 2 cut(s) 588, 872
TscAI CASTG 3 cut(s) 211, 280, 1105
TspDTI ATGAA 4 cut(s) 350, 366, 881, 1113
TspGWI ACGGA 1 cut(s) 250
TspRI CASTG 3 cut(s) 211, 280, 1105
Tth111I GACNNNGTC 1 cut(s) 113
Vha464I CTTAAG 1 cut(s) 587
XapI RAATTY 6 cut(s) 444, 622, 825, 868, 1055, 1180
XmnI GAANNNNTTC 1 cut(s) 357
XspI CTAG 4 cut(s) 516, 530, 638, 902
ZrmI AGTACT 2 cut(s) 184, 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.