pycom02g19930

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000467
Physical Location & Seq
Forward (+)
18019253 .. 18021570
2318 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g19930.3

Sequence Viewer

Length: 1014 bp
ATGGCGCCAGAGCGACAAATCGGAAGAACCCTCGAGGTTTTCCTTCAATTTGGACGGCAAACAATCGCTAATCACTCAAAAGTTGAACAATCAAAATGTGGGTTTGCTGATTTGATGTCTTGTCTGTCACTGTGTGAGTTCGATTTGGATAGCCATGGAAAGAATAGTGATAGAATCAGTAGTCTTCCGGCTGACATACAGCACCATATACTCTCCTTTTTACCCATCAAATTTGTTGCACGAACCAGTGTTTTATCTCGAAGATGGAGTTCTCTATGGGCATCCTTTCCTATCCTAGACTTCTACAGCATGAACCCCTTGAAATCCCGGAAAAAGAATTTTGAATTCATAAGTTCATTGCTGCAACGCCGCGATCAAAACTCTAGGATAAAGATGTTTAGGGTTCAGGGTCATTTGAGTTGTTCTTGTTTGCATGATTGCATTGATTGGGTGGTAAGGCATAGCATTGAAGAACCTACACTTGAAATCAGTTTGGGTGACAAGTTCGATTTGCCTATCTGTGTGTTCAGCTGTGATTCTGTGAGAAGCCTCAATCTGATGGGCAATAGCCCAGCAATTTCAGACTCACAGTTCGGGTTTCCATCTTCTTATGTCGGGGCTATGAGTCTTCGCTCCTTACGTTTAATATTTGTGGACATCTTGGAGAGTGCTTCAGTTGGATGGATGAACATTTTATTGGACAATGCTGATTGCACTGAAGAGGAATACTGGGAAAGTCAAGCTCAAACTTTGAGTCACTTCCTATGCCACTTAAAGGTGGTGAACATTCATCTTTACGAAGATATGATCTCTGAGAGTGTGATTAAGTTTGCAAGGTTTTTGCTTCAACATGGAAGCGGCTTGCAAAAAATGATTCTTTCTACTTTCCAATGCTTTGGTAGCAACAAAAATCCTTGGGAGAATAGCATTGTTTTACTAGAGGGATTGCCCCGGTTATCTGCCAACGTCGAATTCTCAGCTTCTTTTTCTCCAATTGTTTTTTCTGACTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

338

Amino Acids

38.26

Weight (kDa)

6.12

Isoelectric Point (pI)

66.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 32
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 372
AciI CCGC 2 cut(s) 370, 858
AcsI RAATTY 4 cut(s) 230, 337, 344, 971
AcuI CTGAAG 2 cut(s) 657, 738
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 775
AgsI TTSAA 7 cut(s) 47, 86, 322, 344, 470, 485, 848
AjuI GAANNNNNNNTTGG 5 cut(s) 680, 712, 956, 985, 988
AluBI AGCT 3 cut(s) 531, 743, 980
AluI AGCT 3 cut(s) 531, 743, 980
Ama87I CYCGRG 1 cut(s) 32
ApeKI GCWGC 1 cut(s) 361
ApoI RAATTY 4 cut(s) 230, 337, 344, 971
ArsI GACNNNNNNTTYG 4 cut(s) 575, 607, 739, 771
AspLEI GCGC 1 cut(s) 7
AsuC2I CCSGG 2 cut(s) 328, 952
AsuHPI GGTGA 2 cut(s) 509, 793
AvaI CYCGRG 1 cut(s) 32
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 2 cut(s) 176, 620
BbvI GCAGC 1 cut(s) 348
BccI CCATC 5 cut(s) 233, 258, 553, 610, 675
BceAI ACGGC 1 cut(s) 71
BcnI CCSGG 2 cut(s) 328, 952
BfaI CTAG 3 cut(s) 296, 384, 938
BfmI CTRYAG 1 cut(s) 304
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 3 cut(s) 362, 370, 859
BlsI GCNGC 3 cut(s) 363, 371, 860
Bme1390I CCNGG 2 cut(s) 328, 952
BmeT110I CYCGRG 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 328, 952
BmrI ACTGGG 1 cut(s) 739
BmsI GCATC 1 cut(s) 290
BmuI ACTGGG 1 cut(s) 739
BpiI GAAGAC 2 cut(s) 176, 620
BpuMI CCSGG 2 cut(s) 328, 952
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 154, 914, 950
Bsc4I CCNNNNNNNGG 1 cut(s) 775
Bse1I ACTGG 2 cut(s) 246, 734
Bse3DI GCAATG 1 cut(s) 356
BseDI CCNNGG 3 cut(s) 154, 914, 950
BseGI GGATG 3 cut(s) 281, 686, 690
BseLI CCNNNNNNNGG 1 cut(s) 775
BseMI GCAATG 1 cut(s) 356
BseMII CTCAG 2 cut(s) 804, 990
BseNI ACTGG 2 cut(s) 246, 734
BseXI GCAGC 1 cut(s) 348
BseYI CCCAGC 1 cut(s) 571
Bsh1236I CGCG 1 cut(s) 372
BshNI GGYRCC 1 cut(s) 4
BsiHKCI CYCGRG 1 cut(s) 32
BsiSI CCGG 3 cut(s) 188, 328, 952
BslI CCNNNNNNNGG 1 cut(s) 775
BsoBI CYCGRG 1 cut(s) 32
Bsp143I GATC 2 cut(s) 373, 807
Bsp19I CCATGG 1 cut(s) 154
BspACI CCGC 2 cut(s) 370, 858
BspCNI CTCAG 2 cut(s) 805, 989
BspFNI CGCG 1 cut(s) 372
BspLI GGNNCC 1 cut(s) 6
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 356
BsrI ACTGG 2 cut(s) 246, 734
BssECI CCNNGG 3 cut(s) 154, 914, 950
BssMI GATC 2 cut(s) 373, 807
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 154, 914
Bst4CI ACNGT 2 cut(s) 132, 591
Bst6I CTCTTC 1 cut(s) 714
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 863
BstDEI CTNAG 3 cut(s) 813, 976, 1011
BstDSI CCRYGG 1 cut(s) 154
BstF5I GGATG 3 cut(s) 281, 686, 690
BstFNI CGCG 1 cut(s) 372
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 376, 810
BstMBI GATC 2 cut(s) 373, 807
BstMWI GCNNNNNNNGC 1 cut(s) 900
BstSCI CCNGG 2 cut(s) 326, 950
BstSFI CTRYAG 1 cut(s) 304
BstUI CGCG 1 cut(s) 372
BstV1I GCAGC 1 cut(s) 348
BstV2I GAAGAC 2 cut(s) 176, 620
BstXI CCANNNNNNTGG 1 cut(s) 896
BtgI CCRYGG 1 cut(s) 154
BtsCI GGATG 3 cut(s) 281, 686, 690
BtsIMutI CAGTG 3 cut(s) 128, 253, 714
Cac8I GCNNGC 1 cut(s) 863
CfoI GCGC 1 cut(s) 7
CviAII CATG 4 cut(s) 155, 310, 434, 851
CviJI RGCY 9 cut(s) 153, 191, 531, 549, 570, 620, 743, 861, 980
CviKI_1 RGCY 9 cut(s) 153, 191, 531, 549, 570, 620, 743, 861, 980
DdeI CTNAG 3 cut(s) 813, 976, 1011
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 375, 809
DpnII GATC 2 cut(s) 373, 807
DraIII CACNNNGTG 1 cut(s) 134
Eam1104I CTCTTC 1 cut(s) 714
EarI CTCTTC 1 cut(s) 714
Eco130I CCWWGG 2 cut(s) 154, 914
Eco57I CTGAAG 2 cut(s) 657, 738
Eco88I CYCGRG 1 cut(s) 32
EcoRI GAATTC 2 cut(s) 344, 971
EcoT14I CCWWGG 2 cut(s) 154, 914
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 154, 914
FaeI CATG 4 cut(s) 158, 313, 437, 854
FatI CATG 4 cut(s) 154, 309, 433, 850
Fnu4HI GCNGC 3 cut(s) 362, 370, 859
FokI GGATG 3 cut(s) 268, 693, 697
Fsp4HI GCNGC 3 cut(s) 362, 370, 859
FspBI CTAG 3 cut(s) 296, 384, 938
GlaI GCGC 1 cut(s) 6
GluI GCNGC 3 cut(s) 362, 370, 859
GsaI CCCAGC 1 cut(s) 575
HaeII RGCGCY 1 cut(s) 8
HapII CCGG 3 cut(s) 188, 328, 952
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 158, 313, 437, 854
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 7 cut(s) 174, 536, 584, 625, 754, 874, 1007
HpaII CCGG 3 cut(s) 188, 328, 952
HphI GGTGA 2 cut(s) 509, 793
Hpy166II GTNNAC 2 cut(s) 655, 784
Hpy188I TCNGA 5 cut(s) 23, 558, 583, 814, 1006
Hpy188III TCNNGA 1 cut(s) 258
Hpy8I GTNNAC 2 cut(s) 655, 784
Hpy99I CGWCG 1 cut(s) 971
HpyAV CCTTC 1 cut(s) 53
HpyCH4III ACNGT 2 cut(s) 132, 591
HpyCH4IV ACGT 2 cut(s) 640, 966
HpyCH4V TGCA 7 cut(s) 239, 364, 433, 441, 714, 833, 865
HpyF10VI GCNNNNNNNGC 1 cut(s) 900
HpyF3I CTNAG 3 cut(s) 813, 976, 1011
HpySE526I ACGT 2 cut(s) 640, 966
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 158, 313, 437, 854
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 2 cut(s) 373, 807
LmnI GCTCC 1 cut(s) 638
LpnPI CCDG 8 cut(s) 21, 201, 259, 341, 392, 585, 715, 965
Lsp1109I GCAGC 1 cut(s) 348
LweI GCATC 1 cut(s) 290
MaeI CTAG 3 cut(s) 296, 384, 938
MaeII ACGT 2 cut(s) 640, 966
MaeIII GTNAC 3 cut(s) 126, 497, 755
MalI GATC 2 cut(s) 375, 809
MboI GATC 2 cut(s) 373, 807
MboII GAAGA 8 cut(s) 36, 176, 273, 482, 597, 620, 731, 812
MfeI CAATTG 1 cut(s) 993
MluCI AATT 7 cut(s) 47, 230, 337, 344, 576, 971, 993
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 4 cut(s) 578, 634, 763, 1001
MmeI TCCRAC 1 cut(s) 658
MnlI CCTC 5 cut(s) 28, 41, 560, 715, 934
MseI TTAA 3 cut(s) 644, 773, 825
MspA1I CMGCKG 1 cut(s) 531
MspI CCGG 3 cut(s) 188, 328, 952
MspR9I CCNGG 2 cut(s) 328, 952
MunI CAATTG 1 cut(s) 993
MvnI CGCG 1 cut(s) 372
MwoI GCNNNNNNNGC 1 cut(s) 900
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 2 cut(s) 328, 952
NcoI CCATGG 1 cut(s) 154
NdeII GATC 2 cut(s) 373, 807
NlaIII CATG 4 cut(s) 158, 313, 437, 854
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 3 cut(s) 126, 497, 755
PaeR7I CTCGAG 1 cut(s) 32
PcsI WCGNNNNNNNCGW 1 cut(s) 637
PfeI GAWTC 3 cut(s) 174, 536, 874
PfoI TCCNGGA 1 cut(s) 326
PkrI GCNGC 3 cut(s) 363, 371, 860
PleI GAGTC 4 cut(s) 578, 633, 762, 1001
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 4 cut(s) 578, 633, 762, 1001
PspFI CCCAGC 1 cut(s) 571
PspN4I GGNNCC 1 cut(s) 6
PspXI VCTCGAGB 1 cut(s) 32
PvuII CAGCTG 1 cut(s) 531
SaqAI TTAA 3 cut(s) 644, 773, 825
SatI GCNGC 3 cut(s) 362, 370, 859
Sau3AI GATC 2 cut(s) 373, 807
SchI GAGTC 4 cut(s) 578, 634, 763, 1001
ScrFI CCNGG 2 cut(s) 328, 952
SetI ASST 9 cut(s) 39, 478, 533, 643, 745, 780, 839, 969, 982
SfaNI GCATC 1 cut(s) 290
SfcI CTRYAG 1 cut(s) 304
SfoI GGCGCC 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 32
SlaI CTCGAG 1 cut(s) 32
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 7 cut(s) 47, 230, 337, 344, 576, 971, 993
SsiI CCGC 2 cut(s) 370, 858
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 1 cut(s) 648
SspMI CTAG 3 cut(s) 296, 384, 938
StyD4I CCNGG 2 cut(s) 326, 950
StyI CCWWGG 2 cut(s) 154, 914
TaaI ACNGT 2 cut(s) 132, 591
TaiI ACGT 2 cut(s) 643, 969
TaqI TCGA 5 cut(s) 33, 141, 259, 507, 969
TasI AATT 7 cut(s) 47, 230, 337, 344, 576, 971, 993
TauI GCSGC 2 cut(s) 372, 861
TfiI GAWTC 3 cut(s) 174, 536, 874
Tru1I TTAA 3 cut(s) 644, 773, 825
Tru9I TTAA 3 cut(s) 644, 773, 825
TscAI CASTG 3 cut(s) 135, 253, 721
TseFI GTSAC 3 cut(s) 126, 497, 755
TseI GCWGC 1 cut(s) 361
Tsp45I GTSAC 3 cut(s) 126, 497, 755
TspDTI ATGAA 5 cut(s) 326, 337, 345, 701, 779
TspRI CASTG 3 cut(s) 135, 253, 721
XapI RAATTY 4 cut(s) 230, 337, 344, 971
XhoI CTCGAG 1 cut(s) 32
XspI CTAG 3 cut(s) 296, 384, 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.