Rroxscaffold_5G00354170

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000467
Physical Location & Seq
Reverse (-)
32602008 .. 32603240
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00354170.1

Sequence Viewer

Length: 1140 bp
ATGAGCAACGAGACAAAGCTTCAGTTCACAGAGTCAGCGGCCTCCCAGATCGGTGCATTTATGAGGAGGAAGAAAACAAGCACCATGAGAAGAGAAACATGCAGTACTAACTTAGCTGACAGAATCAGTGATCTCCCAGATGATATGTTGCATCTCATACTCTCGTTCCTACCTTTCAAATCCGTCGGGCAAACCAGTGTCTTATCTCGAAGATGGAGTCATGTATGGTCTTCCTATCCCATCTTTGACTTCTACGACATTTTTACTGGTAATGAAGTTCTTCATCACCAGACGAGAGCAAGGATCATAAACACAGTATTGCCTCGCCAGGACAAAAACTATAATATTATGTGTCCATGCCTCAAAATTCCCTTCCCAAGCGGCAGTTTAGGTCAATTTCGAAGAGTTGGGGAAGATCCAAACGATTCTTGTTTTGCTAGGGTTGAGCAACTAGTAGTGGACATCTCCTTGAGTAATGAAAACACATCTGTTTTGCCTCAATGCCAACTTAAGTGCCAATCACTAAGGAGTAGCTGTGGGAATTCAAAGGCATGGCTAGGGTTTCCCTCTTCTTATGTTTTCCCTTGTCTCGAAAAGTTGGAGATAGAGATGTGCAAAGGAATGGATGATCTCAAAATTTGCTGTCCGAACCTAAAAGATATACAAGTTCTAGGAATGGATTTAAAGAGTATGGACGTCTCCGGAATGAGACTAGAGAATATAAGAGTCTCGTATTGTTTTGAAAATTGCATCGATGGAAGTGGGGTTGACATTTTCGCCCCGAATCTAAAATCCTTTACTTGGATGGGTAATGACATTACTGACAAGTGTTCTATCCAGAGCTTTCCTGTGCTCAAAAGGTCTGAATTTCTTTGGCCCCACATTACAACGACGAGGATTTCTAATAGCAGTGTTATAAATATTTTTTCGTCTTCATCCCAAGTTGAAGAACTTACAGTAACATTTGACTTCCTCCAGATTCTATCAGAAATTTATTTTGAATTAGGTGGTCTGCCATTCTCATTCATGAAACTTAAGACCTTGGAAATTTATCCCGATAAAAGATATTTCCCGGCCCGAGGTATAGCATGCCTATTCAAGACTCAAGAGTTCTCCTATAGTCCACAGACTCAGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

379

Amino Acids

43.24

Weight (kDa)

6.97

Isoelectric Point (pI)

54.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 42 - 81 7.6e-10 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 917
AatII GACGTC 1 cut(s) 699
AccIII TCCGGA 1 cut(s) 701
AciI CCGC 2 cut(s) 38, 381
AclWI GGATC 2 cut(s) 311, 410
AcsI RAATTY 6 cut(s) 366, 541, 636, 866, 990, 1047
AcuI CTGAAG 1 cut(s) 5
AcyI GRCGYC 1 cut(s) 696
AfaI GTAC 1 cut(s) 106
AfiI CCNNNNNNNGG 2 cut(s) 801, 1079
AflII CTTAAG 2 cut(s) 509, 1034
AgsI TTSAA 6 cut(s) 178, 546, 743, 947, 1001, 1099
AhlI ACTAGT 1 cut(s) 451
AjnI CCWGG 1 cut(s) 327
AluBI AGCT 4 cut(s) 19, 116, 534, 843
AluI AGCT 4 cut(s) 19, 116, 534, 843
Alw21I GWGCWC 1 cut(s) 855
Alw26I GTCTC 5 cut(s) 5, 593, 703, 703, 733
AlwI GGATC 2 cut(s) 311, 410
Ama87I CYCGRG 1 cut(s) 1077
Aor13HI TCCGGA 1 cut(s) 701
AoxI GGCC 3 cut(s) 39, 875, 1074
ApoI RAATTY 6 cut(s) 366, 541, 636, 866, 990, 1047
ArsI GACNNNNNNTTYG 2 cut(s) 202, 234
Asp700I GAANNNNTTC 1 cut(s) 279
AspS9I GGNCC 2 cut(s) 876, 1075
AsuC2I CCSGG 1 cut(s) 1073
AsuHPI GGTGA 1 cut(s) 278
AsuII TTCGAA 1 cut(s) 400
AvaI CYCGRG 1 cut(s) 1077
BbsI GAAGAC 2 cut(s) 222, 924
Bbv12I GWGCWC 1 cut(s) 855
BccI CCATC 4 cut(s) 207, 248, 749, 799
BciT130I CCWGG 1 cut(s) 329
BcnI CCSGG 1 cut(s) 1073
BcoDI GTCTC 5 cut(s) 5, 593, 703, 703, 733
BcuI ACTAGT 1 cut(s) 451
BfaI CTAG 5 cut(s) 438, 452, 557, 671, 713
BfmI CTRYAG 1 cut(s) 1117
BfrI CTTAAG 2 cut(s) 509, 1034
BisI GCNGC 2 cut(s) 39, 382
BlsI GCNGC 2 cut(s) 40, 383
BmcAI AGTACT 1 cut(s) 106
Bme1390I CCNGG 2 cut(s) 329, 1073
BmeT110I CYCGRG 1 cut(s) 1077
BmgT120I GGNCC 2 cut(s) 876, 1075
BmiI GGNNCC 1 cut(s) 878
BmrFI CCNGG 2 cut(s) 329, 1073
BmsI GCATC 2 cut(s) 160, 759
BpiI GAAGAC 2 cut(s) 222, 924
BpmI CTGGAG 1 cut(s) 959
Bpu14I TTCGAA 1 cut(s) 400
BpuEI CTTGAG 2 cut(s) 490, 1089
BpuMI CCSGG 1 cut(s) 1073
Bsa29I ATCGAT 1 cut(s) 753
BsaHI GRCGYC 1 cut(s) 696
BsaJI CCNNGG 2 cut(s) 1041, 1078
BsaWI WCCGGW 1 cut(s) 701
BsaXI ACNNNNNCTCC 2 cut(s) 520, 550
Bsc4I CCNNNNNNNGG 2 cut(s) 801, 1079
Bse1I ACTGG 2 cut(s) 195, 271
BseAI TCCGGA 1 cut(s) 701
BseBI CCWGG 1 cut(s) 329
BseCI ATCGAT 1 cut(s) 753
BseDI CCNNGG 2 cut(s) 1041, 1078
BseGI GGATG 3 cut(s) 631, 810, 935
BseLI CCNNNNNNNGG 2 cut(s) 801, 1079
BseNI ACTGG 2 cut(s) 195, 271
BseRI GAGGAG 1 cut(s) 79
BshFI GGCC 3 cut(s) 41, 877, 1076
BshVI ATCGAT 1 cut(s) 753
BsiHKAI GWGCWC 1 cut(s) 855
BsiHKCI CYCGRG 1 cut(s) 1077
BsiSI CCGG 2 cut(s) 702, 1073
BslI CCNNNNNNNGG 2 cut(s) 801, 1079
BsmAI GTCTC 5 cut(s) 5, 593, 703, 703, 733
BsmBI CGTCTC 1 cut(s) 703
BsnI GGCC 3 cut(s) 41, 877, 1076
BsoBI CYCGRG 1 cut(s) 1077
Bsp119I TTCGAA 1 cut(s) 400
Bsp1286I GDGCHC 1 cut(s) 855
Bsp13I TCCGGA 1 cut(s) 701
Bsp143I GATC 5 cut(s) 48, 130, 303, 415, 628
BspACI CCGC 2 cut(s) 38, 381
BspANI GGCC 3 cut(s) 41, 877, 1076
BspDI ATCGAT 1 cut(s) 753
BspEI TCCGGA 1 cut(s) 701
BspHI TCATGA 1 cut(s) 1026
BspLI GGNNCC 1 cut(s) 878
BspPI GGATC 2 cut(s) 311, 410
BspT104I TTCGAA 1 cut(s) 400
BspTI CTTAAG 2 cut(s) 509, 1034
BsrI ACTGG 2 cut(s) 195, 271
BssECI CCNNGG 2 cut(s) 1041, 1078
BssMI GATC 5 cut(s) 48, 130, 303, 415, 628
BssNI GRCGYC 1 cut(s) 696
BssT1I CCWWGG 1 cut(s) 1041
Bst2UI CCWGG 1 cut(s) 329
Bst4CI ACNGT 2 cut(s) 316, 958
Bst6I CTCTTC 3 cut(s) 85, 397, 574
BstACI GRCGYC 1 cut(s) 696
BstAFI CTTAAG 2 cut(s) 509, 1034
BstBI TTCGAA 1 cut(s) 400
BstC8I GCNNGC 1 cut(s) 1090
BstDEI CTNAG 3 cut(s) 112, 524, 1131
BstF5I GGATG 3 cut(s) 631, 810, 935
BstKTI GATC 5 cut(s) 51, 133, 306, 418, 631
BstMAI GTCTC 5 cut(s) 5, 593, 703, 703, 733
BstMBI GATC 5 cut(s) 48, 130, 303, 415, 628
BstNI CCWGG 1 cut(s) 329
BstNSI RCATGY 2 cut(s) 102, 1092
BstSCI CCNGG 2 cut(s) 327, 1071
BstSFI CTRYAG 1 cut(s) 1117
BstV2I GAAGAC 2 cut(s) 222, 924
BstX2I RGATCY 1 cut(s) 415
BstYI RGATCY 1 cut(s) 415
Bsu15I ATCGAT 1 cut(s) 753
BsuRI GGCC 3 cut(s) 41, 877, 1076
BsuTUI ATCGAT 1 cut(s) 753
BtsCI GGATG 3 cut(s) 631, 810, 935
BtsI GCAGTG 1 cut(s) 916
BtsIMutI CAGTG 3 cut(s) 133, 202, 916
Cac8I GCNNGC 1 cut(s) 1090
CciI TCATGA 1 cut(s) 1026
Cfr13I GGNCC 2 cut(s) 876, 1075
ClaI ATCGAT 1 cut(s) 753
Csp6I GTAC 1 cut(s) 105
CviAII CATG 7 cut(s) 85, 99, 221, 357, 552, 1027, 1089
CviJI RGCY 8 cut(s) 19, 41, 116, 534, 556, 843, 877, 1076
CviKI_1 RGCY 8 cut(s) 19, 41, 116, 534, 556, 843, 877, 1076
CviQI GTAC 1 cut(s) 105
DdeI CTNAG 3 cut(s) 112, 524, 1131
DpnI GATC 5 cut(s) 50, 132, 305, 417, 630
DpnII GATC 5 cut(s) 48, 130, 303, 415, 628
DraI TTTAAA 1 cut(s) 684
Eam1104I CTCTTC 3 cut(s) 85, 397, 574
EarI CTCTTC 3 cut(s) 85, 397, 574
Eco130I CCWWGG 1 cut(s) 1041
Eco57I CTGAAG 1 cut(s) 5
Eco88I CYCGRG 1 cut(s) 1077
EcoRI GAATTC 1 cut(s) 541
EcoRII CCWGG 1 cut(s) 327
EcoT14I CCWWGG 1 cut(s) 1041
ErhI CCWWGG 1 cut(s) 1041
Esp3I CGTCTC 1 cut(s) 703
FaeI CATG 7 cut(s) 88, 102, 224, 360, 555, 1030, 1092
FatI CATG 7 cut(s) 84, 98, 220, 356, 551, 1026, 1088
Fnu4HI GCNGC 2 cut(s) 39, 382
FokI GGATG 3 cut(s) 638, 817, 922
Fsp4HI GCNGC 2 cut(s) 39, 382
FspBI CTAG 5 cut(s) 438, 452, 557, 671, 713
GluI GCNGC 2 cut(s) 39, 382
GsuI CTGGAG 1 cut(s) 959
HaeIII GGCC 3 cut(s) 41, 877, 1076
HapII CCGG 2 cut(s) 702, 1073
Hin1I GRCGYC 1 cut(s) 696
Hin1II CATG 7 cut(s) 88, 102, 224, 360, 555, 1030, 1092
HincII GTYRAC 1 cut(s) 769
HindII GTYRAC 1 cut(s) 769
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 9 cut(s) 32, 123, 217, 425, 726, 784, 979, 1102, 1129
HpaII CCGG 2 cut(s) 702, 1073
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 4 cut(s) 27, 460, 769, 1124
Hpy188I TCNGA 3 cut(s) 648, 865, 988
Hpy188III TCNNGA 9 cut(s) 207, 590, 702, 838, 976, 1027, 1055, 1099, 1106
Hpy8I GTNNAC 4 cut(s) 27, 460, 769, 1124
Hpy99I CGWCG 2 cut(s) 188, 895
HpyAV CCTTC 1 cut(s) 382
HpyCH4III ACNGT 2 cut(s) 316, 958
HpyCH4IV ACGT 1 cut(s) 696
HpyCH4V TGCA 5 cut(s) 56, 102, 151, 615, 750
HpyF3I CTNAG 3 cut(s) 112, 524, 1131
HpySE526I ACGT 1 cut(s) 696
Hsp92I GRCGYC 1 cut(s) 696
Hsp92II CATG 7 cut(s) 88, 102, 224, 360, 555, 1030, 1092
Kpn2I TCCGGA 1 cut(s) 701
Kzo9I GATC 5 cut(s) 48, 130, 303, 415, 628
LweI GCATC 2 cut(s) 160, 759
MaeI CTAG 5 cut(s) 438, 452, 557, 671, 713
MaeII ACGT 1 cut(s) 696
MaeIII GTNAC 1 cut(s) 958
MalI GATC 5 cut(s) 50, 132, 305, 417, 630
MboI GATC 5 cut(s) 48, 130, 303, 415, 628
MflI RGATCY 1 cut(s) 415
MhlI GDGCHC 1 cut(s) 855
MluCI AATT 9 cut(s) 366, 395, 541, 636, 745, 866, 990, 1001, 1047
MlyI GAGTC 5 cut(s) 41, 226, 735, 1096, 1123
MmeI TCCRAC 1 cut(s) 579
MroI TCCGGA 1 cut(s) 701
MroXI GAANNNNTTC 1 cut(s) 279
MseI TTAA 3 cut(s) 510, 683, 1035
MspA1I CMGCKG 1 cut(s) 38
MspCI CTTAAG 2 cut(s) 509, 1034
MspI CCGG 2 cut(s) 702, 1073
MspR9I CCNGG 2 cut(s) 329, 1073
MvaI CCWGG 1 cut(s) 329
NciI CCSGG 1 cut(s) 1073
NdeII GATC 5 cut(s) 48, 130, 303, 415, 628
NlaIII CATG 7 cut(s) 88, 102, 224, 360, 555, 1030, 1092
NlaIV GGNNCC 1 cut(s) 878
NspI RCATGY 2 cut(s) 102, 1092
NspV TTCGAA 1 cut(s) 400
PaeI GCATGC 1 cut(s) 1092
PagI TCATGA 1 cut(s) 1026
PdmI GAANNNNTTC 1 cut(s) 279
PfeI GAWTC 4 cut(s) 123, 425, 784, 979
PkrI GCNGC 2 cut(s) 40, 383
PleI GAGTC 5 cut(s) 40, 225, 734, 1096, 1123
PpsI GAGTC 5 cut(s) 40, 225, 734, 1096, 1123
PsiI TTATAA 1 cut(s) 917
Psp6I CCWGG 1 cut(s) 327
PspGI CCWGG 1 cut(s) 327
PspN4I GGNNCC 1 cut(s) 878
PspPI GGNCC 2 cut(s) 876, 1075
PsuI RGATCY 1 cut(s) 415
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
SaqAI TTAA 3 cut(s) 510, 683, 1035
SatI GCNGC 2 cut(s) 39, 382
Sau3AI GATC 5 cut(s) 48, 130, 303, 415, 628
Sau96I GGNCC 2 cut(s) 876, 1075
ScaI AGTACT 1 cut(s) 106
SchI GAGTC 5 cut(s) 41, 226, 735, 1096, 1123
ScrFI CCNGG 2 cut(s) 329, 1073
SduI GDGCHC 1 cut(s) 855
SfaNI GCATC 2 cut(s) 160, 759
SfcI CTRYAG 1 cut(s) 1117
SfuI TTCGAA 1 cut(s) 400
SmlI CTYRAG 4 cut(s) 469, 509, 1034, 1104
SmoI CTYRAG 4 cut(s) 469, 509, 1034, 1104
SpeI ACTAGT 1 cut(s) 451
SphI GCATGC 1 cut(s) 1092
Sse9I AATT 9 cut(s) 366, 395, 541, 636, 745, 866, 990, 1001, 1047
SsiI CCGC 2 cut(s) 38, 381
SspI AATATT 2 cut(s) 346, 922
SspMI CTAG 5 cut(s) 438, 452, 557, 671, 713
StyD4I CCNGG 2 cut(s) 327, 1071
StyI CCWWGG 1 cut(s) 1041
TaaI ACNGT 2 cut(s) 316, 958
TaiI ACGT 1 cut(s) 699
TaqI TCGA 4 cut(s) 208, 400, 591, 753
TasI AATT 9 cut(s) 366, 395, 541, 636, 745, 866, 990, 1001, 1047
TatI WGTACW 1 cut(s) 104
TauI GCSGC 2 cut(s) 41, 384
TfiI GAWTC 4 cut(s) 123, 425, 784, 979
Tru1I TTAA 3 cut(s) 510, 683, 1035
Tru9I TTAA 3 cut(s) 510, 683, 1035
TscAI CASTG 3 cut(s) 133, 202, 916
TspDTI ATGAA 6 cut(s) 272, 288, 492, 924, 1015, 1043
TspGWI ACGGA 1 cut(s) 172
TspRI CASTG 3 cut(s) 133, 202, 916
Vha464I CTTAAG 2 cut(s) 509, 1034
XapI RAATTY 6 cut(s) 366, 541, 636, 866, 990, 1047
XceI RCATGY 2 cut(s) 102, 1092
XmnI GAANNNNTTC 1 cut(s) 279
XspI CTAG 5 cut(s) 438, 452, 557, 671, 713
ZraI GACGTC 1 cut(s) 697
ZrmI AGTACT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.