Rh3BG028600

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000467
Physical Location & Seq
Forward (+)
1907421 .. 1907726
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG028600.1

Sequence Viewer

Length: 306 bp
ATGATGAGTGGAACGACTTGGATGACGGTCGCCAACTGCACTGAAGAGCAATACTGGGAGACTCGAGCTCGATATTTGAGCCCCTTTCTTAGTCACCTAAAGGTGGTCGACATTAACCTTGGCAACATGATCCCTGAGAATGCACAGTTTTTCCTTAAATATGGAAGAGGCTTGCAAAAAGTGATTCTTAGATTTCGTAGGGGCAAAAGTACTCTACCTCCCAATTTGCTGAAGGATACCATTGCTTTAATGGAGGGTATGCCCCGGGAATCGGCCGATGTTGATATCTCAACTTCTTGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

101

Amino Acids

11.59

Weight (kDa)

8.66

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 108
AclWI GGATC 1 cut(s) 124
AcoI YGGCCR 1 cut(s) 273
AcuI CTGAAG 2 cut(s) 63, 251
AfaI GTAC 1 cut(s) 211
AfiI CCNNNNNNNGG 2 cut(s) 103, 271
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
Alw21I GWGCWC 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 53
AlwI GGATC 1 cut(s) 124
Ama87I CYCGRG 2 cut(s) 63, 264
AoxI GGCC 1 cut(s) 273
AsuC2I CCSGG 2 cut(s) 265, 266
AsuHPI GGTGA 1 cut(s) 86
AvaI CYCGRG 2 cut(s) 63, 264
BanII GRGCYC 2 cut(s) 70, 83
Bbv12I GWGCWC 1 cut(s) 70
BciVI GTATCC 1 cut(s) 229
BcnI CCSGG 2 cut(s) 265, 266
BcoDI GTCTC 1 cut(s) 53
BfuI GTATCC 1 cut(s) 229
BmcAI AGTACT 1 cut(s) 211
Bme1390I CCNGG 2 cut(s) 265, 266
BmeT110I CYCGRG 2 cut(s) 63, 264
BmrFI CCNGG 2 cut(s) 265, 266
BmrI ACTGGG 1 cut(s) 64
BmuI ACTGGG 1 cut(s) 64
BpuMI CCSGG 2 cut(s) 265, 266
BsaJI CCNNGG 3 cut(s) 118, 263, 264
BsaXI ACNNNNNCTCC 2 cut(s) 202, 232
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 271
Bse1I ACTGG 1 cut(s) 59
Bse3DI GCAATG 1 cut(s) 240
BseDI CCNNGG 3 cut(s) 118, 263, 264
BseGI GGATG 1 cut(s) 27
BseLI CCNNNNNNNGG 2 cut(s) 103, 271
BseMI GCAATG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 126
BseNI ACTGG 1 cut(s) 59
BseX3I CGGCCG 1 cut(s) 273
BsgI GTGCAG 1 cut(s) 22
Bsh1285I CGRYCG 2 cut(s) 30, 276
BshFI GGCC 1 cut(s) 275
BsiEI CGRYCG 2 cut(s) 30, 276
BsiHKAI GWGCWC 1 cut(s) 70
BsiHKCI CYCGRG 2 cut(s) 63, 264
BsiSI CCGG 1 cut(s) 265
BslI CCNNNNNNNGG 2 cut(s) 103, 271
BsmAI GTCTC 1 cut(s) 53
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 1 cut(s) 275
BsoBI CYCGRG 2 cut(s) 63, 264
Bsp1286I GDGCHC 2 cut(s) 70, 83
Bsp143I GATC 1 cut(s) 129
BspANI GGCC 1 cut(s) 275
BspCNI CTCAG 1 cut(s) 127
BspPI GGATC 1 cut(s) 124
BspQI GCTCTTC 1 cut(s) 39
BsrDI GCAATG 1 cut(s) 240
BsrI ACTGG 1 cut(s) 59
BssECI CCNNGG 3 cut(s) 118, 263, 264
BssMI GATC 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 118
Bst4CI ACNGT 2 cut(s) 28, 147
Bst6I CTCTTC 2 cut(s) 39, 160
BstC8I GCNNGC 1 cut(s) 173
BstDEI CTNAG 3 cut(s) 89, 135, 188
BstF5I GGATG 1 cut(s) 27
BstKTI GATC 1 cut(s) 132
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 1 cut(s) 129
BstMCI CGRYCG 2 cut(s) 30, 276
BstSCI CCNGG 2 cut(s) 263, 264
BstZI CGGCCG 1 cut(s) 273
BsuI GTATCC 1 cut(s) 229
BsuRI GGCC 1 cut(s) 275
BtsCI GGATG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 173
Cfr9I CCCGGG 1 cut(s) 264
Csp6I GTAC 1 cut(s) 210
CviAII CATG 1 cut(s) 127
CviJI RGCY 4 cut(s) 68, 81, 171, 275
CviKI_1 RGCY 4 cut(s) 68, 81, 171, 275
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 3 cut(s) 89, 135, 188
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
EaeI YGGCCR 1 cut(s) 273
EagI CGGCCG 1 cut(s) 273
Eam1104I CTCTTC 2 cut(s) 39, 160
EarI CTCTTC 2 cut(s) 39, 160
Ecl136II GAGCTC 1 cut(s) 68
EclXI CGGCCG 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 118
Eco24I GRGCYC 2 cut(s) 70, 83
Eco32I GATATC 1 cut(s) 286
Eco52I CGGCCG 1 cut(s) 273
Eco53kI GAGCTC 1 cut(s) 68
Eco57I CTGAAG 2 cut(s) 63, 251
Eco88I CYCGRG 2 cut(s) 63, 264
EcoICRI GAGCTC 1 cut(s) 68
EcoRV GATATC 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 118
EcoT38I GRGCYC 2 cut(s) 70, 83
ErhI CCWWGG 1 cut(s) 118
FaeI CATG 1 cut(s) 130
FaiI YATR 3 cut(s) 128, 162, 260
FalI AAGNNNNNCTT 2 cut(s) 171, 203
FatI CATG 1 cut(s) 126
FblI GTMKAC 1 cut(s) 108
FokI GGATG 1 cut(s) 34
FriOI GRGCYC 2 cut(s) 70, 83
HaeIII GGCC 1 cut(s) 275
HapII CCGG 1 cut(s) 265
Hin1II CATG 1 cut(s) 130
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 3 cut(s) 61, 184, 269
HpaII CCGG 1 cut(s) 265
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 109
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 1 cut(s) 226
HpyCH4III ACNGT 2 cut(s) 28, 147
HpyCH4V TGCA 3 cut(s) 39, 143, 175
HpyF3I CTNAG 3 cut(s) 89, 135, 188
Hsp92II CATG 1 cut(s) 130
Kzo9I GATC 1 cut(s) 129
LguI GCTCTTC 1 cut(s) 39
LpnPI CCDG 3 cut(s) 40, 147, 278
MaeIII GTNAC 1 cut(s) 92
MalI GATC 1 cut(s) 131
MboI GATC 1 cut(s) 129
MboII GAAGA 2 cut(s) 56, 177
MhlI GDGCHC 2 cut(s) 70, 83
MluCI AATT 1 cut(s) 223
MlyI GAGTC 1 cut(s) 55
MnlI CCTC 3 cut(s) 161, 228, 247
MseI TTAA 3 cut(s) 114, 156, 248
MspI CCGG 1 cut(s) 265
MspR9I CCNGG 2 cut(s) 265, 266
Mva1269I GAATGC 1 cut(s) 145
NciI CCSGG 2 cut(s) 265, 266
NdeII GATC 1 cut(s) 129
NlaIII CATG 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 92
PaeR7I CTCGAG 1 cut(s) 63
PciSI GCTCTTC 1 cut(s) 39
PctI GAATGC 1 cut(s) 145
PfeI GAWTC 2 cut(s) 184, 269
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
Psp124BI GAGCTC 1 cut(s) 70
PspXI VCTCGAGB 1 cut(s) 63
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SacI GAGCTC 1 cut(s) 70
SalI GTCGAC 1 cut(s) 107
SapI GCTCTTC 1 cut(s) 39
SaqAI TTAA 3 cut(s) 114, 156, 248
Sau3AI GATC 1 cut(s) 129
ScaI AGTACT 1 cut(s) 211
SchI GAGTC 1 cut(s) 55
ScrFI CCNGG 2 cut(s) 265, 266
SduI GDGCHC 2 cut(s) 70, 83
SetI ASST 5 cut(s) 70, 99, 105, 120, 220
Sfr274I CTCGAG 1 cut(s) 63
SlaI CTCGAG 1 cut(s) 63
SmaI CCCGGG 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
Sse9I AATT 1 cut(s) 223
SstI GAGCTC 1 cut(s) 70
StyD4I CCNGG 2 cut(s) 263, 264
StyI CCWWGG 1 cut(s) 118
TaaI ACNGT 2 cut(s) 28, 147
TaqI TCGA 3 cut(s) 64, 70, 108
TasI AATT 1 cut(s) 223
TatI WGTACW 1 cut(s) 209
TfiI GAWTC 2 cut(s) 184, 269
Tru1I TTAA 3 cut(s) 114, 156, 248
Tru9I TTAA 3 cut(s) 114, 156, 248
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 92
TspMI CCCGGG 1 cut(s) 264
TspRI CASTG 1 cut(s) 46
XcmI CCANNNNNNNNNTGG 1 cut(s) 247
XhoI CTCGAG 1 cut(s) 63
XmaI CCCGGG 1 cut(s) 264
XmiI GTMKAC 1 cut(s) 108
ZrmI AGTACT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.