FvH4_6g26921

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000467
Physical Location & Seq
Reverse (-)
20599603 .. 20600562
960 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g26921.t1

Sequence Viewer

Length: 444 bp
ATGTTGTTTGGTCTTATCTCCTTGCTCTCCAAGACTTGTCTCTCACTCATGTGGATTTCTCGGATAGTGCTTTTTCAGAAAGGATGTATCCGGGGTATAGCATGCCTGTTGAAGGGCTCTCCCGTAGTCCACACCCTTGAGATTTTGTCTCTAGAATACGGTAAGTGGAACAACAGTTTGTTGAAAGCTGAGGCTCATCAATATTTAAGGAAGGGGCTCAGTCACATAAAGGTGGTCAGTATTATTCTTGCTGGTAATATATCTGAGAATGCAGTCGCTTTTGCAGAGCTTTTGCTTAAATATGGAAATGGCCTGCAAGAAATGATTATTAGCTCTCTGTGGAGCAGAAGTCTTCCTCCCAATTTCCTAGATGATACCATTGCTTTATTAAAGAGTTTCCCCAGGGCATCTGCAGATATCAAATTCTTAACATCGAGATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

148

Amino Acids

16.37

Weight (kDa)

9.55

Isoelectric Point (pI)

33.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 422
AfiI CCNNNNNNNGG 1 cut(s) 112
AgsI TTSAA 2 cut(s) 112, 184
AjnI CCWGG 1 cut(s) 401
AleI CACNNNNGTG 1 cut(s) 49
AluBI AGCT 3 cut(s) 188, 289, 333
AluI AGCT 3 cut(s) 188, 289, 333
Alw26I GTCTC 2 cut(s) 44, 153
AoxI GGCC 1 cut(s) 310
ApoI RAATTY 1 cut(s) 422
AsuC2I CCSGG 1 cut(s) 92
BanII GRGCYC 2 cut(s) 119, 219
BbsI GAAGAC 1 cut(s) 344
BbvCI CCTCAGC 1 cut(s) 189
BciT130I CCWGG 1 cut(s) 403
BciVI GTATCC 1 cut(s) 98
BcnI CCSGG 1 cut(s) 92
BcoDI GTCTC 2 cut(s) 44, 153
BfaI CTAG 2 cut(s) 152, 368
BfmI CTRYAG 1 cut(s) 411
BfuI GTATCC 1 cut(s) 98
Bme1390I CCNGG 2 cut(s) 92, 403
BmrFI CCNGG 2 cut(s) 92, 403
BmsI GCATC 1 cut(s) 416
BpiI GAAGAC 1 cut(s) 344
Bpu10I CCTNAGC 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 158
BpuMI CCSGG 1 cut(s) 92
BsaJI CCNNGG 3 cut(s) 91, 401, 402
BsaXI ACNNNNNCTCC 2 cut(s) 334, 364
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse3DI GCAATG 1 cut(s) 378
BseBI CCWGG 1 cut(s) 403
BseDI CCNNGG 3 cut(s) 91, 401, 402
BseGI GGATG 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 112
BseMI GCAATG 1 cut(s) 378
BseMII CTCAG 3 cut(s) 180, 232, 255
BshFI GGCC 1 cut(s) 312
BsiSI CCGG 1 cut(s) 91
BslI CCNNNNNNNGG 1 cut(s) 112
BsmAI GTCTC 2 cut(s) 44, 153
BsmI GAATGC 1 cut(s) 274
BsnI GGCC 1 cut(s) 312
Bsp1286I GDGCHC 2 cut(s) 119, 219
BspANI GGCC 1 cut(s) 312
BspCNI CTCAG 3 cut(s) 181, 231, 256
BspMAI CTGCAG 1 cut(s) 415
BsrDI GCAATG 1 cut(s) 378
BssECI CCNNGG 3 cut(s) 91, 401, 402
Bst2UI CCWGG 1 cut(s) 403
Bst4CI ACNGT 2 cut(s) 161, 176
BstC8I GCNNGC 2 cut(s) 103, 314
BstDEI CTNAG 3 cut(s) 189, 218, 264
BstENI CCTNNNNNAGG 1 cut(s) 110
BstF5I GGATG 1 cut(s) 89
BstMAI GTCTC 2 cut(s) 44, 153
BstNI CCWGG 1 cut(s) 403
BstNSI RCATGY 1 cut(s) 105
BstSCI CCNGG 2 cut(s) 90, 401
BstSFI CTRYAG 1 cut(s) 411
BstV2I GAAGAC 1 cut(s) 344
BsuI GTATCC 1 cut(s) 98
BsuRI GGCC 1 cut(s) 312
BtsCI GGATG 1 cut(s) 89
Cac8I GCNNGC 2 cut(s) 103, 314
CviAII CATG 2 cut(s) 49, 102
CviJI RGCY 7 cut(s) 117, 188, 194, 217, 289, 312, 333
CviKI_1 RGCY 7 cut(s) 117, 188, 194, 217, 289, 312, 333
DdeI CTNAG 3 cut(s) 189, 218, 264
Eco24I GRGCYC 2 cut(s) 119, 219
Eco32I GATATC 1 cut(s) 418
EcoNI CCTNNNNNAGG 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 401
EcoRV GATATC 1 cut(s) 418
EcoT38I GRGCYC 2 cut(s) 119, 219
FaeI CATG 2 cut(s) 52, 105
FaiI YATR 6 cut(s) 50, 98, 103, 227, 260, 303
FatI CATG 2 cut(s) 48, 101
FokI GGATG 1 cut(s) 96
FriOI GRGCYC 2 cut(s) 119, 219
FspBI CTAG 2 cut(s) 152, 368
HaeIII GGCC 1 cut(s) 312
HapII CCGG 1 cut(s) 91
Hin1II CATG 2 cut(s) 52, 105
HpaII CCGG 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 3 cut(s) 63, 78, 265
Hpy188III TCNNGA 2 cut(s) 152, 435
Hpy8I GTNNAC 1 cut(s) 130
HpyAV CCTTC 2 cut(s) 106, 205
HpyCH4III ACNGT 2 cut(s) 161, 176
HpyCH4V TGCA 4 cut(s) 272, 284, 316, 413
HpyF3I CTNAG 3 cut(s) 189, 218, 264
Hsp92II CATG 2 cut(s) 52, 105
LmnI GCTCC 1 cut(s) 342
LpnPI CCDG 6 cut(s) 104, 119, 237, 326, 388, 415
LweI GCATC 1 cut(s) 416
MaeI CTAG 2 cut(s) 152, 368
MaeIII GTNAC 1 cut(s) 221
MboII GAAGA 1 cut(s) 344
MhlI GDGCHC 2 cut(s) 119, 219
MluCI AATT 2 cut(s) 361, 422
MnlI CCTC 2 cut(s) 184, 366
MseI TTAA 4 cut(s) 206, 297, 389, 428
MslI CAYNNNNRTG 2 cut(s) 49, 230
MspI CCGG 1 cut(s) 91
MspR9I CCNGG 2 cut(s) 92, 403
Mva1269I GAATGC 1 cut(s) 274
MvaI CCWGG 1 cut(s) 403
NciI CCSGG 1 cut(s) 92
NlaIII CATG 2 cut(s) 52, 105
NmuCI GTSAC 1 cut(s) 221
NspI RCATGY 1 cut(s) 105
OliI CACNNNNGTG 1 cut(s) 49
PaeI GCATGC 1 cut(s) 105
PasI CCCWGGG 1 cut(s) 402
PctI GAATGC 1 cut(s) 274
Psp6I CCWGG 1 cut(s) 401
PspGI CCWGG 1 cut(s) 401
PstI CTGCAG 1 cut(s) 415
RseI CAYNNNNRTG 2 cut(s) 49, 230
SaqAI TTAA 4 cut(s) 206, 297, 389, 428
ScrFI CCNGG 2 cut(s) 92, 403
SduI GDGCHC 2 cut(s) 119, 219
SetI ASST 4 cut(s) 190, 234, 291, 335
SfaNI GCATC 1 cut(s) 416
SfcI CTRYAG 1 cut(s) 411
SmiMI CAYNNNNRTG 2 cut(s) 49, 230
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SphI GCATGC 1 cut(s) 105
Sse9I AATT 2 cut(s) 361, 422
SspI AATATT 1 cut(s) 203
SspMI CTAG 2 cut(s) 152, 368
StyD4I CCNGG 2 cut(s) 90, 401
TaaI ACNGT 2 cut(s) 161, 176
TaqI TCGA 1 cut(s) 434
TasI AATT 2 cut(s) 361, 422
Tru1I TTAA 4 cut(s) 206, 297, 389, 428
Tru9I TTAA 4 cut(s) 206, 297, 389, 428
TseFI GTSAC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 221
XagI CCTNNNNNAGG 1 cut(s) 110
XapI RAATTY 1 cut(s) 422
XbaI TCTAGA 1 cut(s) 151
XceI RCATGY 1 cut(s) 105
XspI CTAG 2 cut(s) 152, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.