Rorug04G0095600

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000467
Physical Location & Seq
Forward (+)
15047990 .. 15048640
651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0095600.1

Sequence Viewer

Length: 531 bp
ATGCCTGGACACTCTAATGGGATCTTGGACAGTAAGTTACTTGTGGGGTTAGGTGTAACTCCAGTGCCGAAAATTAGGCGAATTCCTCGACTTGTTTTTTGGCATCTCCCTATTCTTCCTTGGTTGAAACTTAATACCGATGGCCTTGCTAAAGGAAATCCAGGCCCTGCTGCTTGTGGTGGTGTTTTCCGGGATTGTTCTGGCCAATTCGTTGGAGGTTTTTCTTACCGGATGGGGTGGCATCATATTTGGCTTGAAAGTGATTCAACAAGTATTCTGGCATGTCTCTCTTCCTCTTCTTTTATCCCACCATGGCCGCTGCGAATTTTGTGGTTAAATTGCCTAGATCGGATTCGTGCCATGCATTTCTTTTGCTCTCATATTCTTCGTGAGGGCAACACAGTGGCTGATAAGATTACGAGCTTGGGTTTAACATCCACATCTCTTGTTTGGTATGCTACTCCTCCATCTGAGCTTCTCCCATTGTTATATGTGGATGCCATGGGTTTCCCATATGTTAGGGCAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

176

Amino Acids

19.49

Weight (kDa)

9.14

Isoelectric Point (pI)

53.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 317
AclWI GGATC 1 cut(s) 29
AcoI YGGCCR 2 cut(s) 202, 314
AcsI RAATTY 2 cut(s) 81, 324
AgsI TTSAA 3 cut(s) 127, 257, 267
AjnI CCWGG 2 cut(s) 4, 160
AluBI AGCT 2 cut(s) 423, 475
AluI AGCT 2 cut(s) 423, 475
Alw26I GTCTC 1 cut(s) 290
AlwI GGATC 1 cut(s) 29
AlwNI CAGNNNCTG 2 cut(s) 167, 407
AoxI GGCC 4 cut(s) 142, 163, 202, 314
ApeKI GCWGC 2 cut(s) 170, 319
ApoI RAATTY 2 cut(s) 81, 324
ArsI GACNNNNNNTTYG 2 cut(s) 81, 113
AspS9I GGNCC 1 cut(s) 164
AsuC2I CCSGG 1 cut(s) 191
BalI TGGCCA 1 cut(s) 204
BbvI GCAGC 2 cut(s) 157, 306
BccI CCATC 3 cut(s) 134, 226, 475
BcgI CGANNNNNNTGC 2 cut(s) 128, 162
BciT130I CCWGG 2 cut(s) 6, 162
BcnI CCSGG 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 1 cut(s) 344
BisI GCNGC 3 cut(s) 171, 317, 320
BlsI GCNGC 3 cut(s) 172, 318, 321
Bme1390I CCNGG 3 cut(s) 6, 162, 191
BmgT120I GGNCC 1 cut(s) 164
BmrFI CCNGG 3 cut(s) 6, 162, 191
BmsI GCATC 3 cut(s) 112, 250, 487
BpmI CTGGAG 1 cut(s) 45
BpuMI CCSGG 1 cut(s) 191
BsaJI CCNNGG 3 cut(s) 119, 311, 501
BsaWI WCCGGW 1 cut(s) 228
Bse1I ACTGG 1 cut(s) 62
BseBI CCWGG 2 cut(s) 6, 162
BseDI CCNNGG 3 cut(s) 119, 311, 501
BseGI GGATG 3 cut(s) 237, 434, 502
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 1 cut(s) 62
BseRI GAGGAG 1 cut(s) 453
BseXI GCAGC 2 cut(s) 157, 306
BshFI GGCC 4 cut(s) 144, 165, 204, 316
BsiSI CCGG 2 cut(s) 190, 229
BsmAI GTCTC 1 cut(s) 290
BsnI GGCC 4 cut(s) 144, 165, 204, 316
Bsp143I GATC 2 cut(s) 21, 346
Bsp19I CCATGG 2 cut(s) 311, 501
BspACI CCGC 1 cut(s) 317
BspANI GGCC 4 cut(s) 144, 165, 204, 316
BspCNI CTCAG 1 cut(s) 463
BspPI GGATC 1 cut(s) 29
BsrI ACTGG 1 cut(s) 62
BssECI CCNNGG 3 cut(s) 119, 311, 501
BssMI GATC 2 cut(s) 21, 346
BssT1I CCWWGG 3 cut(s) 119, 311, 501
Bst2UI CCWGG 2 cut(s) 6, 162
Bst4CI ACNGT 2 cut(s) 32, 403
Bst6I CTCTTC 2 cut(s) 295, 301
BstDEI CTNAG 1 cut(s) 471
BstDSI CCRYGG 2 cut(s) 311, 501
BstF5I GGATG 3 cut(s) 237, 434, 502
BstKTI GATC 2 cut(s) 24, 349
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 2 cut(s) 21, 346
BstNI CCWGG 2 cut(s) 6, 162
BstNSI RCATGY 1 cut(s) 285
BstSCI CCNGG 3 cut(s) 4, 160, 189
BstV1I GCAGC 2 cut(s) 157, 306
BstX2I RGATCY 1 cut(s) 21
BstXI CCANNNNNNTGG 1 cut(s) 212
BstYI RGATCY 1 cut(s) 21
BsuRI GGCC 4 cut(s) 144, 165, 204, 316
BtgI CCRYGG 2 cut(s) 311, 501
BtsCI GGATG 3 cut(s) 237, 434, 502
BtsIMutI CAGTG 2 cut(s) 69, 408
CaiI CAGNNNCTG 2 cut(s) 167, 407
Cfr13I GGNCC 1 cut(s) 164
CspCI CAANNNNNGTGG 2 cut(s) 427, 462
CviAII CATG 4 cut(s) 282, 312, 361, 502
CviJI RGCY 8 cut(s) 144, 165, 204, 253, 316, 407, 423, 475
CviKI_1 RGCY 8 cut(s) 144, 165, 204, 253, 316, 407, 423, 475
DdeI CTNAG 1 cut(s) 471
DpnI GATC 2 cut(s) 23, 348
DpnII GATC 2 cut(s) 21, 346
EaeI YGGCCR 2 cut(s) 202, 314
Eam1104I CTCTTC 2 cut(s) 295, 301
EarI CTCTTC 2 cut(s) 295, 301
Eco130I CCWWGG 3 cut(s) 119, 311, 501
EcoO109I RGGNCCY 1 cut(s) 164
EcoRI GAATTC 1 cut(s) 81
EcoRII CCWGG 2 cut(s) 4, 160
EcoT14I CCWWGG 3 cut(s) 119, 311, 501
EcoT22I ATGCAT 1 cut(s) 366
ErhI CCWWGG 3 cut(s) 119, 311, 501
FaeI CATG 4 cut(s) 285, 315, 364, 505
FatI CATG 4 cut(s) 281, 311, 360, 501
FauNDI CATATG 1 cut(s) 514
Fnu4HI GCNGC 3 cut(s) 171, 317, 320
FokI GGATG 3 cut(s) 244, 421, 509
Fsp4HI GCNGC 3 cut(s) 171, 317, 320
FspBI CTAG 1 cut(s) 344
GluI GCNGC 3 cut(s) 171, 317, 320
GsuI CTGGAG 1 cut(s) 45
HaeIII GGCC 4 cut(s) 144, 165, 204, 316
HapII CCGG 2 cut(s) 190, 229
Hin1II CATG 4 cut(s) 285, 315, 364, 505
HinfI GANTC 2 cut(s) 263, 352
HpaII CCGG 2 cut(s) 190, 229
Hpy188I TCNGA 2 cut(s) 351, 472
Hpy188III TCNNGA 1 cut(s) 389
HpyCH4III ACNGT 2 cut(s) 32, 403
HpyCH4V TGCA 1 cut(s) 364
HpyF3I CTNAG 1 cut(s) 471
Hsp92II CATG 4 cut(s) 285, 315, 364, 505
Kzo9I GATC 2 cut(s) 21, 346
LpnPI CCDG 9 cut(s) 18, 75, 147, 174, 180, 186, 203, 242, 263
Lsp1109I GCAGC 2 cut(s) 157, 306
LweI GCATC 3 cut(s) 112, 250, 487
MaeI CTAG 1 cut(s) 344
MaeIII GTNAC 2 cut(s) 36, 55
MalI GATC 2 cut(s) 23, 348
MboI GATC 2 cut(s) 21, 346
MboII GAAGA 4 cut(s) 107, 282, 288, 377
MflI RGATCY 1 cut(s) 21
MlsI TGGCCA 1 cut(s) 204
MluCI AATT 5 cut(s) 72, 81, 206, 324, 337
MluNI TGGCCA 1 cut(s) 204
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 5 cut(s) 96, 209, 304, 385, 474
Mox20I TGGCCA 1 cut(s) 204
Mph1103I ATGCAT 1 cut(s) 366
MscI TGGCCA 1 cut(s) 204
MseI TTAA 4 cut(s) 132, 335, 431, 529
MslI CAYNNNNRTG 1 cut(s) 15
Msp20I TGGCCA 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 319
MspI CCGG 2 cut(s) 190, 229
MspR9I CCNGG 3 cut(s) 6, 162, 191
MvaI CCWGG 2 cut(s) 6, 162
NciI CCSGG 1 cut(s) 191
NcoI CCATGG 2 cut(s) 311, 501
NdeI CATATG 1 cut(s) 514
NdeII GATC 2 cut(s) 21, 346
NlaIII CATG 4 cut(s) 285, 315, 364, 505
NsiI ATGCAT 1 cut(s) 366
NspI RCATGY 1 cut(s) 285
PfeI GAWTC 2 cut(s) 263, 352
PfoI TCCNGGA 1 cut(s) 189
PkrI GCNGC 3 cut(s) 172, 318, 321
Psp6I CCWGG 2 cut(s) 4, 160
PspGI CCWGG 2 cut(s) 4, 160
PspPI GGNCC 1 cut(s) 164
PstNI CAGNNNCTG 2 cut(s) 167, 407
PsuI RGATCY 1 cut(s) 21
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 4 cut(s) 132, 335, 431, 529
SatI GCNGC 3 cut(s) 171, 317, 320
Sau3AI GATC 2 cut(s) 21, 346
Sau96I GGNCC 1 cut(s) 164
ScrFI CCNGG 3 cut(s) 6, 162, 191
SetI ASST 4 cut(s) 55, 220, 425, 477
SfaNI GCATC 3 cut(s) 112, 250, 487
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 5 cut(s) 72, 81, 206, 324, 337
SsiI CCGC 1 cut(s) 317
SspMI CTAG 1 cut(s) 344
StyD4I CCNGG 3 cut(s) 4, 160, 189
StyI CCWWGG 3 cut(s) 119, 311, 501
TaaI ACNGT 2 cut(s) 32, 403
TaqI TCGA 1 cut(s) 88
TasI AATT 5 cut(s) 72, 81, 206, 324, 337
TauI GCSGC 1 cut(s) 319
TfiI GAWTC 2 cut(s) 263, 352
Tru1I TTAA 4 cut(s) 132, 335, 431, 529
Tru9I TTAA 4 cut(s) 132, 335, 431, 529
TscAI CASTG 2 cut(s) 69, 408
TseI GCWGC 2 cut(s) 170, 319
TspRI CASTG 2 cut(s) 69, 408
XapI RAATTY 2 cut(s) 81, 324
XceI RCATGY 1 cut(s) 285
XspI CTAG 1 cut(s) 344
Zsp2I ATGCAT 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.