RLG00000008538

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000467
Physical Location & Seq
Forward (+)
31756186 .. 31756865
680 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008538

Sequence Viewer

Length: 549 bp
ATGGAAGTGGGGTTGACGTGCATTTTCGCCCCGAATCTAAAATCCTTTGCTTGGGTGGGTAATGGCATTACTGACAAGTGTTCGATCCAGAGCTTTCCTGTTCTCAAAAGGTATGAATTTCTTTGGCCCCACGTTACAACGAAGAAGATTTCTAATAACAGTGTTATCGATGGAGAGGATCCTGTTATCGATCTTTTTTCGTCTTCATCCCAAGTTGAAGAACTTACAACAACTTTTGACTTCCTCCAGATTCTATCAGAAATTTATTTTGAATTAGGTGGTCTGCCATTCTCATTCATGAAACTTAAGACCTTGGAAATTTATCCCGACAAAAGATATTTCCCGACCCGAGGTATAGCATGCCTATTCAAGAGTTCTCCTATAGTCCACAGACTCAGCATTCATCATTATATCGACTTTTATGAAGAAAATTATGATGAGTGGACCGACTTGGATTACGCCAACTCTACTGAAAAGCAATACTGCGAGACTCGAGCTCAATATTTGAGCCCCTTCCTTAGTCAGTCGACATTAACCTTAGCAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

183

Amino Acids

21.04

Weight (kDa)

4.94

Isoelectric Point (pI)

50.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 527
AclWI GGATC 3 cut(s) 79, 173, 186
AcsI RAATTY 3 cut(s) 116, 261, 318
AfiI CCNNNNNNNGG 2 cut(s) 51, 350
AflII CTTAAG 1 cut(s) 305
AgsI TTSAA 3 cut(s) 218, 272, 370
AjiI CACGTC 1 cut(s) 18
AluBI AGCT 2 cut(s) 93, 497
AluI AGCT 2 cut(s) 93, 497
Alw21I GWGCWC 1 cut(s) 499
Alw26I GTCTC 1 cut(s) 482
AlwI GGATC 3 cut(s) 79, 173, 186
Ama87I CYCGRG 2 cut(s) 348, 492
AoxI GGCC 1 cut(s) 125
ApoI RAATTY 3 cut(s) 116, 261, 318
AspS9I GGNCC 2 cut(s) 126, 444
AvaI CYCGRG 2 cut(s) 348, 492
AvaII GGWCC 1 cut(s) 444
BamHI GGATCC 1 cut(s) 178
BanII GRGCYC 2 cut(s) 499, 512
BbsI GAAGAC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 499
BccI CCATC 1 cut(s) 164
BcoDI GTCTC 1 cut(s) 482
BfmI CTRYAG 1 cut(s) 381
BfrI CTTAAG 1 cut(s) 305
Bme18I GGWCC 1 cut(s) 444
BmeT110I CYCGRG 2 cut(s) 348, 492
BmgBI CACGTC 1 cut(s) 18
BmgT120I GGNCC 2 cut(s) 126, 444
BmiI GGNNCC 2 cut(s) 128, 180
BpiI GAAGAC 1 cut(s) 195
BpmI CTGGAG 1 cut(s) 230
Bpu10I CCTNAGC 1 cut(s) 538
Bsa29I ATCGAT 2 cut(s) 168, 189
BsaJI CCNNGG 2 cut(s) 312, 349
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 350
BseCI ATCGAT 2 cut(s) 168, 189
BseDI CCNNGG 2 cut(s) 312, 349
BseGI GGATG 1 cut(s) 206
BseLI CCNNNNNNNGG 2 cut(s) 51, 350
BseMII CTCAG 1 cut(s) 409
BshFI GGCC 1 cut(s) 127
BshVI ATCGAT 2 cut(s) 168, 189
BsiHKAI GWGCWC 1 cut(s) 499
BsiHKCI CYCGRG 2 cut(s) 348, 492
BslI CCNNNNNNNGG 2 cut(s) 51, 350
BsmAI GTCTC 1 cut(s) 482
BsmI GAATGC 1 cut(s) 399
BsnI GGCC 1 cut(s) 127
BsoBI CYCGRG 2 cut(s) 348, 492
Bsp1286I GDGCHC 2 cut(s) 499, 512
Bsp143I GATC 3 cut(s) 84, 178, 190
BspANI GGCC 1 cut(s) 127
BspCNI CTCAG 1 cut(s) 408
BspDI ATCGAT 2 cut(s) 168, 189
BspHI TCATGA 1 cut(s) 297
BspLI GGNNCC 2 cut(s) 128, 180
BspPI GGATC 3 cut(s) 79, 173, 186
BspTI CTTAAG 1 cut(s) 305
BssECI CCNNGG 2 cut(s) 312, 349
BssMI GATC 3 cut(s) 84, 178, 190
BssT1I CCWWGG 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 161
BstAFI CTTAAG 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 361
BstDEI CTNAG 3 cut(s) 395, 518, 538
BstF5I GGATG 1 cut(s) 206
BstKTI GATC 3 cut(s) 87, 181, 193
BstMAI GTCTC 1 cut(s) 482
BstMBI GATC 3 cut(s) 84, 178, 190
BstNSI RCATGY 1 cut(s) 363
BstSFI CTRYAG 1 cut(s) 381
BstV2I GAAGAC 1 cut(s) 195
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
Bsu15I ATCGAT 2 cut(s) 168, 189
BsuRI GGCC 1 cut(s) 127
BsuTUI ATCGAT 2 cut(s) 168, 189
BtrI CACGTC 1 cut(s) 18
BtsCI GGATG 1 cut(s) 206
BtsIMutI CAGTG 1 cut(s) 166
Cac8I GCNNGC 1 cut(s) 361
CciI TCATGA 1 cut(s) 297
Cfr13I GGNCC 2 cut(s) 126, 444
ClaI ATCGAT 2 cut(s) 168, 189
CviAII CATG 3 cut(s) 298, 360, 546
CviJI RGCY 4 cut(s) 93, 127, 497, 510
CviKI_1 RGCY 4 cut(s) 93, 127, 497, 510
DdeI CTNAG 3 cut(s) 395, 518, 538
DpnI GATC 3 cut(s) 86, 180, 192
DpnII GATC 3 cut(s) 84, 178, 190
Ecl136II GAGCTC 1 cut(s) 497
Eco130I CCWWGG 1 cut(s) 312
Eco24I GRGCYC 2 cut(s) 499, 512
Eco47I GGWCC 1 cut(s) 444
Eco53kI GAGCTC 1 cut(s) 497
Eco88I CYCGRG 2 cut(s) 348, 492
EcoICRI GAGCTC 1 cut(s) 497
EcoT14I CCWWGG 1 cut(s) 312
EcoT38I GRGCYC 2 cut(s) 499, 512
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 3 cut(s) 301, 363, 549
FaiI YATR 9 cut(s) 114, 299, 356, 361, 383, 411, 423, 435, 547
FatI CATG 3 cut(s) 297, 359, 545
FblI GTMKAC 1 cut(s) 527
FokI GGATG 1 cut(s) 193
FriOI GRGCYC 2 cut(s) 499, 512
GsuI CTGGAG 1 cut(s) 230
HaeIII GGCC 1 cut(s) 127
Hin1II CATG 3 cut(s) 301, 363, 549
HincII GTYRAC 2 cut(s) 15, 528
HindII GTYRAC 2 cut(s) 15, 528
HinfI GANTC 4 cut(s) 34, 250, 393, 490
Hpy166II GTNNAC 4 cut(s) 15, 388, 444, 528
Hpy188I TCNGA 1 cut(s) 259
Hpy188III TCNNGA 6 cut(s) 88, 247, 298, 326, 343, 370
Hpy8I GTNNAC 4 cut(s) 15, 388, 444, 528
HpyAV CCTTC 1 cut(s) 523
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4IV ACGT 2 cut(s) 17, 132
HpyCH4V TGCA 1 cut(s) 21
HpyF3I CTNAG 3 cut(s) 395, 518, 538
HpySE526I ACGT 2 cut(s) 17, 132
Hsp92II CATG 3 cut(s) 301, 363, 549
Kzo9I GATC 3 cut(s) 84, 178, 190
LpnPI CCDG 4 cut(s) 101, 111, 195, 260
MaeII ACGT 2 cut(s) 17, 132
MaeIII GTNAC 1 cut(s) 133
MalI GATC 3 cut(s) 86, 180, 192
MboI GATC 3 cut(s) 84, 178, 190
MboII GAAGA 5 cut(s) 154, 157, 195, 230, 437
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 2 cut(s) 499, 512
MluCI AATT 5 cut(s) 116, 261, 272, 318, 430
MlyI GAGTC 2 cut(s) 387, 484
MnlI CCTC 3 cut(s) 169, 254, 344
MseI TTAA 2 cut(s) 306, 533
MspCI CTTAAG 1 cut(s) 305
Mva1269I GAATGC 1 cut(s) 399
NdeII GATC 3 cut(s) 84, 178, 190
NlaIII CATG 3 cut(s) 301, 363, 549
NlaIV GGNNCC 2 cut(s) 128, 180
NspI RCATGY 1 cut(s) 363
PaeI GCATGC 1 cut(s) 363
PaeR7I CTCGAG 1 cut(s) 492
PagI TCATGA 1 cut(s) 297
PctI GAATGC 1 cut(s) 399
PfeI GAWTC 2 cut(s) 34, 250
PleI GAGTC 2 cut(s) 387, 484
PpsI GAGTC 2 cut(s) 387, 484
Psp124BI GAGCTC 1 cut(s) 499
PspN4I GGNNCC 2 cut(s) 128, 180
PspPI GGNCC 2 cut(s) 126, 444
PspXI VCTCGAGB 1 cut(s) 492
PsuI RGATCY 1 cut(s) 178
SacI GAGCTC 1 cut(s) 499
SalI GTCGAC 1 cut(s) 526
SaqAI TTAA 2 cut(s) 306, 533
Sau3AI GATC 3 cut(s) 84, 178, 190
Sau96I GGNCC 2 cut(s) 126, 444
SchI GAGTC 2 cut(s) 387, 484
SduI GDGCHC 2 cut(s) 499, 512
SetI ASST 9 cut(s) 20, 95, 113, 135, 280, 314, 355, 499, 539
SfcI CTRYAG 1 cut(s) 381
Sfr274I CTCGAG 1 cut(s) 492
SinI GGWCC 1 cut(s) 444
SlaI CTCGAG 1 cut(s) 492
SmlI CTYRAG 2 cut(s) 305, 492
SmoI CTYRAG 2 cut(s) 305, 492
SphI GCATGC 1 cut(s) 363
Sse9I AATT 5 cut(s) 116, 261, 272, 318, 430
SspI AATATT 1 cut(s) 503
SstI GAGCTC 1 cut(s) 499
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 1 cut(s) 161
TaiI ACGT 2 cut(s) 20, 135
TaqI TCGA 6 cut(s) 83, 168, 189, 414, 493, 527
TaqII GACCGA 1 cut(s) 461
TasI AATT 5 cut(s) 116, 261, 272, 318, 430
TfiI GAWTC 2 cut(s) 34, 250
Tru1I TTAA 2 cut(s) 306, 533
Tru9I TTAA 2 cut(s) 306, 533
TscAI CASTG 1 cut(s) 166
TspDTI ATGAA 6 cut(s) 129, 195, 286, 314, 392, 438
TspRI CASTG 1 cut(s) 166
Vha464I CTTAAG 1 cut(s) 305
VpaK11BI GGWCC 1 cut(s) 444
XapI RAATTY 3 cut(s) 116, 261, 318
XceI RCATGY 1 cut(s) 363
XhoI CTCGAG 1 cut(s) 492
XmiI GTMKAC 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.