pycom09g00770

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000467
Physical Location & Seq
Reverse (-)
589990 .. 591009
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g00770.1

Sequence Viewer

Length: 897 bp
ATGGGAAACAAAGCATCTTTTTGTTGTTACAAATCATCCCACTGCGAGGAGTACTCAAACTCGAAAAGTAGTAGAGTTTCAGAGTGGGGAGAGGAGGAAGAAAACAAGCCTCATGAGGACTACTCAAACTTGAAAAGTAGTAGAGCTTCAGATAGAGCTTCAGAGCCGGGAGAGGAGGAAGAAAACAAACCTCATGATCAAAACAGTGACAGAACTAGCAATCTTCCAGATGCTATATTACATCAGACACTTTCCTTGTTACCCATCAAAACCATTGCACAAACCAATGTTTTATCTAGAAGATGGAGTTATCTATGGGCTTCCTATCCTGTCCTTGACTTCTCTGAGGTTTTTCCAATGCCCTATCCCAAATATTTGGTTAATGAGAAAATACTTGATCAGCAAACTAAAGCAATGAAGTCCATAACCACAGTATTGTCCTGCCGCCATGAAAACTCTAATATAAGGGTTTTTCGTGTTTCAGGCCATCTGAGTTGTTCTGATTTGTATGATTTCATTGGTCGGGTGGTGAAGCATAGAGTTGAGGAACTTAGTCTTGAAATCTGGCCGAGAGATAATTGTGAAGTTCCATACTGTTTAATTGAATGTGATTCGTTAAGGAGTCTCAAATTGGAAACGGAAGCTCCACAATATAGATGCATAGGGCGGCCAATTTTATTAAAACTTAGTTCTAAGAGTGGTCTCCGTTCCCTTCACTCATTGTCTCCAACCGGTGTGCATTTCTCGGAGAGTGCTTTGGACGATGTGGATTTATTTACCAGTTCTTCATTCACTTCTCTTGAGAGATTGACAGTAGAATATTGTAAAAATATGAGTCATGATCTTATAGTTAGAAGTCCCAACCTCAAAGATGTACAAATATCAGTGGAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

299

Amino Acids

34.11

Weight (kDa)

5.73

Isoelectric Point (pI)

57.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 445, 667
AcoI YGGCCR 2 cut(s) 566, 668
AcuI CTGAAG 2 cut(s) 132, 144
AfaI GTAC 2 cut(s) 53, 876
AfiI CCNNNNNNNGG 1 cut(s) 46
AgeI ACCGGT 1 cut(s) 731
AgsI TTSAA 3 cut(s) 133, 560, 605
AluBI AGCT 3 cut(s) 146, 158, 644
AluI AGCT 3 cut(s) 146, 158, 644
Alw26I GTCTC 3 cut(s) 629, 707, 729
AoxI GGCC 3 cut(s) 484, 566, 668
AsiGI ACCGGT 1 cut(s) 731
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 541
BarI GAAGNNNNNNTAC 2 cut(s) 130, 162
BccI CCATC 3 cut(s) 272, 297, 495
BclI TGATCA 2 cut(s) 196, 397
BcnI CCSGG 1 cut(s) 168
BcoDI GTCTC 3 cut(s) 629, 707, 729
BfaI CTAG 2 cut(s) 216, 297
BisI GCNGC 2 cut(s) 445, 668
BlsI GCNGC 2 cut(s) 446, 669
BmcAI AGTACT 1 cut(s) 53
Bme1390I CCNGG 1 cut(s) 168
BmrFI CCNGG 1 cut(s) 168
BmsI GCATC 3 cut(s) 23, 220, 647
BplI GAGNNNNNCTC 4 cut(s) 38, 70, 107, 139
BpuEI CTTGAG 1 cut(s) 821
BpuMI CCSGG 1 cut(s) 168
BsaI GGTCTC 1 cut(s) 707
BsaWI WCCGGW 1 cut(s) 731
BsaXI ACNNNNNCTCC 2 cut(s) 628, 658
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse118I RCCGGY 1 cut(s) 731
Bse1I ACTGG 1 cut(s) 780
Bse3DI GCAATG 2 cut(s) 273, 420
BseGI GGATG 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMI GCAATG 2 cut(s) 273, 420
BseMII CTCAG 2 cut(s) 336, 482
BseNI ACTGG 1 cut(s) 780
BseRI GAGGAG 3 cut(s) 62, 107, 188
BshFI GGCC 3 cut(s) 486, 568, 670
BshTI ACCGGT 1 cut(s) 731
BsiSI CCGG 2 cut(s) 167, 732
BslFI GGGAC 1 cut(s) 843
BslI CCNNNNNNNGG 1 cut(s) 46
BsmAI GTCTC 3 cut(s) 629, 707, 729
BsmFI GGGAC 1 cut(s) 843
BsnI GGCC 3 cut(s) 486, 568, 670
Bso31I GGTCTC 1 cut(s) 707
Bsp1407I TGTACA 1 cut(s) 874
Bsp143I GATC 3 cut(s) 196, 397, 841
BspACI CCGC 2 cut(s) 445, 667
BspANI GGCC 3 cut(s) 486, 568, 670
BspCNI CTCAG 2 cut(s) 337, 483
BspHI TCATGA 3 cut(s) 112, 193, 838
BspTNI GGTCTC 1 cut(s) 707
BsrDI GCAATG 2 cut(s) 273, 420
BsrFI RCCGGY 1 cut(s) 731
BsrGI TGTACA 1 cut(s) 874
BsrI ACTGG 1 cut(s) 780
BssAI RCCGGY 1 cut(s) 731
BssMI GATC 3 cut(s) 196, 397, 841
Bst4CI ACNGT 4 cut(s) 206, 433, 596, 814
BstAUI TGTACA 1 cut(s) 874
BstDEI CTNAG 5 cut(s) 345, 491, 551, 686, 693
BstF5I GGATG 1 cut(s) 35
BstKTI GATC 3 cut(s) 199, 400, 844
BstMAI GTCTC 3 cut(s) 629, 707, 729
BstMBI GATC 3 cut(s) 196, 397, 841
BstSCI CCNGG 1 cut(s) 166
BstXI CCANNNNNNTGG 1 cut(s) 376
BsuRI GGCC 3 cut(s) 486, 568, 670
BtsCI GGATG 1 cut(s) 35
BtsI GCAGTG 1 cut(s) 40
BtsIMutI CAGTG 3 cut(s) 40, 211, 891
CciI TCATGA 3 cut(s) 112, 193, 838
Cfr10I RCCGGY 1 cut(s) 731
Csp6I GTAC 2 cut(s) 52, 875
CspAI ACCGGT 1 cut(s) 731
CviAII CATG 4 cut(s) 113, 194, 449, 839
CviJI RGCY 9 cut(s) 109, 146, 158, 166, 320, 486, 568, 644, 670
CviKI_1 RGCY 9 cut(s) 109, 146, 158, 166, 320, 486, 568, 644, 670
CviQI GTAC 2 cut(s) 52, 875
DdeI CTNAG 5 cut(s) 345, 491, 551, 686, 693
DpnI GATC 3 cut(s) 198, 399, 843
DpnII GATC 3 cut(s) 196, 397, 841
EaeI YGGCCR 2 cut(s) 566, 668
Eco31I GGTCTC 1 cut(s) 707
Eco57I CTGAAG 2 cut(s) 132, 144
EcoT22I ATGCAT 1 cut(s) 662
FaeI CATG 4 cut(s) 116, 197, 452, 842
FaqI GGGAC 1 cut(s) 843
FatI CATG 4 cut(s) 112, 193, 448, 838
FbaI TGATCA 2 cut(s) 196, 397
Fnu4HI GCNGC 2 cut(s) 445, 668
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 2 cut(s) 445, 668
FspBI CTAG 2 cut(s) 216, 297
GluI GCNGC 2 cut(s) 445, 668
HaeIII GGCC 3 cut(s) 486, 568, 670
HapII CCGG 2 cut(s) 167, 732
Hin1II CATG 4 cut(s) 116, 197, 452, 842
HinfI GANTC 3 cut(s) 611, 622, 835
HpaII CCGG 2 cut(s) 167, 732
HphI GGTGA 1 cut(s) 541
Hpy188I TCNGA 8 cut(s) 82, 151, 163, 246, 346, 492, 502, 748
Hpy188III TCNNGA 7 cut(s) 113, 194, 227, 297, 557, 800, 839
HpyAV CCTTC 1 cut(s) 722
HpyCH4III ACNGT 4 cut(s) 206, 433, 596, 814
HpyCH4V TGCA 3 cut(s) 278, 660, 739
HpyF3I CTNAG 5 cut(s) 345, 491, 551, 686, 693
Hsp92II CATG 4 cut(s) 116, 197, 452, 842
Ksp22I TGATCA 2 cut(s) 196, 397
Kzo9I GATC 3 cut(s) 196, 397, 841
LmnI GCTCC 1 cut(s) 649
LpnPI CCDG 8 cut(s) 180, 240, 342, 454, 468, 550, 745, 793
LweI GCATC 3 cut(s) 23, 220, 647
MaeI CTAG 2 cut(s) 216, 297
MaeIII GTNAC 3 cut(s) 26, 206, 258
MalI GATC 3 cut(s) 198, 399, 843
MboI GATC 3 cut(s) 196, 397, 841
MboII GAAGA 5 cut(s) 110, 191, 215, 312, 777
MluCI AATT 4 cut(s) 577, 600, 629, 672
MlyI GAGTC 2 cut(s) 631, 844
MmeI TCCRAC 1 cut(s) 752
Mph1103I ATGCAT 1 cut(s) 662
MseI TTAA 4 cut(s) 381, 599, 617, 680
MspI CCGG 2 cut(s) 167, 732
MspR9I CCNGG 1 cut(s) 168
NciI CCSGG 1 cut(s) 168
NdeII GATC 3 cut(s) 196, 397, 841
NlaIII CATG 4 cut(s) 116, 197, 452, 842
NmeAIII GCCGAG 1 cut(s) 594
NmuCI GTSAC 1 cut(s) 206
NsiI ATGCAT 1 cut(s) 662
PagI TCATGA 3 cut(s) 112, 193, 838
PfeI GAWTC 1 cut(s) 611
PinAI ACCGGT 1 cut(s) 731
PkrI GCNGC 2 cut(s) 446, 669
PleI GAGTC 2 cut(s) 630, 843
PpsI GAGTC 2 cut(s) 630, 843
RsaI GTAC 2 cut(s) 53, 876
RsaNI GTAC 2 cut(s) 52, 875
SaqAI TTAA 4 cut(s) 381, 599, 617, 680
SatI GCNGC 2 cut(s) 445, 668
Sau3AI GATC 3 cut(s) 196, 397, 841
ScaI AGTACT 1 cut(s) 53
SchI GAGTC 2 cut(s) 631, 844
ScrFI CCNGG 1 cut(s) 168
SetI ASST 6 cut(s) 148, 160, 193, 351, 646, 867
SfaNI GCATC 3 cut(s) 23, 220, 647
SmlI CTYRAG 1 cut(s) 800
SmoI CTYRAG 1 cut(s) 800
Sse9I AATT 4 cut(s) 577, 600, 629, 672
SsiI CCGC 2 cut(s) 445, 667
SspI AATATT 3 cut(s) 374, 821, 893
SspMI CTAG 2 cut(s) 216, 297
StyD4I CCNGG 1 cut(s) 166
TaaI ACNGT 4 cut(s) 206, 433, 596, 814
TaqI TCGA 1 cut(s) 62
TasI AATT 4 cut(s) 577, 600, 629, 672
TatI WGTACW 2 cut(s) 51, 874
TauI GCSGC 2 cut(s) 447, 670
TfiI GAWTC 1 cut(s) 611
Tru1I TTAA 4 cut(s) 381, 599, 617, 680
Tru9I TTAA 4 cut(s) 381, 599, 617, 680
TscAI CASTG 3 cut(s) 47, 211, 891
TseFI GTSAC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 4 cut(s) 431, 465, 505, 777
TspGWI ACGGA 2 cut(s) 653, 695
TspRI CASTG 3 cut(s) 47, 211, 891
XbaI TCTAGA 1 cut(s) 296
XspI CTAG 2 cut(s) 216, 297
ZrmI AGTACT 1 cut(s) 53
Zsp2I ATGCAT 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.