Rh5CG305100

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000467
Physical Location & Seq
Reverse (-)
33621470 .. 33622114
645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG305100.1

Sequence Viewer

Length: 438 bp
ATGGGAAACTGTTTCACTCATAAAGAAAAAGCTTCAGATCGGTGGATCCGGGAGGAGGAGGAAGAAAACAAACACCATGAGCAGCGAAACAGAATCAGCGATCCCCCAGATCAGTGCACTGATGCTCCGGCTGACAGAATCAGCGGTGATCTTTCAGATCGGTGGAGTGAGGAGGAAGAAAACAAGCATGAGAAGAGAAACAGTACTGGTTCATCTGACAGAATCAGTGATCTCCCAGATGATATGTTGCATCTCATACTCTCATTCTTGCCTTTCAAATACGTTGGGCAAACTAGTGTCTTATCTCGAAGATGGAGTCATGTATGGTCTTCCTATCCCATCTTTGACTTCTACGAAATTTTTACTGGTAATGAAGCTGAGCAAGCATCATCAACACAGTATTGGCACGCGATCGTCACAACGAAAACTATAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

145

Amino Acids

17.01

Weight (kDa)

5.09

Isoelectric Point (pI)

65.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 75 - 114 2e-10 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 410
AciI CCGC 1 cut(s) 144
AclWI GGATC 3 cut(s) 40, 53, 95
AcsI RAATTY 1 cut(s) 357
AcuI CTGAAG 1 cut(s) 18
AfaI GTAC 1 cut(s) 205
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 1 cut(s) 277
AhlI ACTAGT 1 cut(s) 293
AluBI AGCT 2 cut(s) 32, 377
AluI AGCT 2 cut(s) 32, 377
Alw21I GWGCWC 1 cut(s) 119
Alw44I GTGCAC 1 cut(s) 115
AlwI GGATC 3 cut(s) 40, 53, 95
ApaLI GTGCAC 1 cut(s) 115
ApeKI GCWGC 1 cut(s) 82
ApoI RAATTY 1 cut(s) 357
ArsI GACNNNNNNTTYG 2 cut(s) 301, 333
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 158
BaeGI GKGCMC 1 cut(s) 119
BamHI GGATCC 1 cut(s) 45
BbsI GAAGAC 1 cut(s) 321
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 94
BccI CCATC 2 cut(s) 306, 347
BcnI CCSGG 1 cut(s) 50
BcuI ACTAGT 1 cut(s) 293
BfaI CTAG 1 cut(s) 294
BisI GCNGC 1 cut(s) 83
BlpI GCTNAGC 1 cut(s) 378
BlsI GCNGC 1 cut(s) 84
BmcAI AGTACT 1 cut(s) 205
Bme1390I CCNGG 1 cut(s) 50
BmiI GGNNCC 1 cut(s) 47
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 3 cut(s) 112, 259, 395
BpiI GAAGAC 1 cut(s) 321
Bpu1102I GCTNAGC 1 cut(s) 378
BpuMI CCSGG 1 cut(s) 50
BsaXI ACNNNNNCTCC 2 cut(s) 109, 139
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse1I ACTGG 2 cut(s) 211, 370
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 2 cut(s) 211, 370
BseRI GAGGAG 3 cut(s) 68, 71, 185
BseSI GKGCMC 1 cut(s) 119
BseXI GCAGC 1 cut(s) 94
Bsh1236I CGCG 1 cut(s) 410
Bsh1285I CGRYCG 1 cut(s) 414
BsiEI CGRYCG 1 cut(s) 414
BsiHKAI GWGCWC 1 cut(s) 119
BsiSI CCGG 2 cut(s) 49, 128
BslI CCNNNNNNNGG 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 8 cut(s) 37, 45, 100, 109, 148, 157, 229, 411
Bsp1720I GCTNAGC 1 cut(s) 378
BspACI CCGC 1 cut(s) 144
BspCNI CTCAG 1 cut(s) 370
BspFNI CGCG 1 cut(s) 410
BspLI GGNNCC 1 cut(s) 47
BspPI GGATC 3 cut(s) 40, 53, 95
BsrI ACTGG 2 cut(s) 211, 370
BssMI GATC 8 cut(s) 37, 45, 100, 109, 148, 157, 229, 411
Bst4CI ACNGT 3 cut(s) 11, 203, 399
Bst6I CTCTTC 1 cut(s) 188
BstC8I GCNNGC 2 cut(s) 384, 408
BstDEI CTNAG 1 cut(s) 378
BstFNI CGCG 1 cut(s) 410
BstKTI GATC 8 cut(s) 40, 48, 103, 112, 151, 160, 232, 414
BstMBI GATC 8 cut(s) 37, 45, 100, 109, 148, 157, 229, 411
BstMCI CGRYCG 1 cut(s) 414
BstMWI GCNNNNNNNGC 1 cut(s) 383
BstSCI CCNGG 1 cut(s) 48
BstSLI GKGCMC 1 cut(s) 119
BstUI CGCG 1 cut(s) 410
BstV1I GCAGC 1 cut(s) 94
BstV2I GAAGAC 1 cut(s) 321
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BtsIMutI CAGTG 3 cut(s) 117, 119, 232
Cac8I GCNNGC 2 cut(s) 384, 408
Csp6I GTAC 1 cut(s) 204
CviAII CATG 4 cut(s) 77, 188, 320, 435
CviJI RGCY 3 cut(s) 32, 131, 377
CviKI_1 RGCY 3 cut(s) 32, 131, 377
CviQI GTAC 1 cut(s) 204
DdeI CTNAG 1 cut(s) 378
DpnI GATC 8 cut(s) 39, 47, 102, 111, 150, 159, 231, 413
DpnII GATC 8 cut(s) 37, 45, 100, 109, 148, 157, 229, 411
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Eco57I CTGAAG 1 cut(s) 18
FaeI CATG 4 cut(s) 80, 191, 323, 438
FaiI YATR 9 cut(s) 21, 78, 189, 245, 257, 321, 325, 431, 436
FatI CATG 4 cut(s) 76, 187, 319, 434
Fnu4HI GCNGC 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 83
FspBI CTAG 1 cut(s) 294
GluI GCNGC 1 cut(s) 83
HapII CCGG 2 cut(s) 49, 128
Hin1II CATG 4 cut(s) 80, 191, 323, 438
HindIII AAGCTT 1 cut(s) 30
HinfI GANTC 4 cut(s) 93, 138, 222, 316
HpaII CCGG 2 cut(s) 49, 128
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 1 cut(s) 117
Hpy188I TCNGA 3 cut(s) 37, 157, 217
Hpy188III TCNNGA 1 cut(s) 306
Hpy8I GTNNAC 1 cut(s) 117
HpyCH4III ACNGT 3 cut(s) 11, 203, 399
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 2 cut(s) 117, 250
HpyF10VI GCNNNNNNNGC 1 cut(s) 383
HpyF3I CTNAG 1 cut(s) 378
HpySE526I ACGT 1 cut(s) 282
Hsp92II CATG 4 cut(s) 80, 191, 323, 438
Kzo9I GATC 8 cut(s) 37, 45, 100, 109, 148, 157, 229, 411
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 6 cut(s) 62, 120, 141, 192, 249, 351
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 3 cut(s) 112, 259, 395
MaeI CTAG 1 cut(s) 294
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 1 cut(s) 415
MalI GATC 8 cut(s) 39, 47, 102, 111, 150, 159, 231, 413
MboI GATC 8 cut(s) 37, 45, 100, 109, 148, 157, 229, 411
MboII GAAGA 5 cut(s) 74, 188, 205, 321, 321
MflI RGATCY 1 cut(s) 45
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 1 cut(s) 357
MlyI GAGTC 1 cut(s) 325
MnlI CCTC 5 cut(s) 46, 49, 52, 163, 166
MspA1I CMGCKG 1 cut(s) 144
MspI CCGG 2 cut(s) 49, 128
MspR9I CCNGG 1 cut(s) 50
MvnI CGCG 1 cut(s) 410
MwoI GCNNNNNNNGC 1 cut(s) 383
NciI CCSGG 1 cut(s) 50
NdeII GATC 8 cut(s) 37, 45, 100, 109, 148, 157, 229, 411
NlaIII CATG 4 cut(s) 80, 191, 323, 438
NlaIV GGNNCC 1 cut(s) 47
NmuCI GTSAC 1 cut(s) 415
PfeI GAWTC 3 cut(s) 93, 138, 222
PfoI TCCNGGA 1 cut(s) 48
PkrI GCNGC 1 cut(s) 84
Ple19I CGATCG 1 cut(s) 414
PleI GAGTC 1 cut(s) 324
PpsI GAGTC 1 cut(s) 324
PspN4I GGNNCC 1 cut(s) 47
PsuI RGATCY 1 cut(s) 45
PvuI CGATCG 1 cut(s) 414
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
SatI GCNGC 1 cut(s) 83
Sau3AI GATC 8 cut(s) 37, 45, 100, 109, 148, 157, 229, 411
ScaI AGTACT 1 cut(s) 205
SchI GAGTC 1 cut(s) 325
ScrFI CCNGG 1 cut(s) 50
SduI GDGCHC 1 cut(s) 119
SetI ASST 3 cut(s) 34, 285, 379
SfaNI GCATC 3 cut(s) 112, 259, 395
SpeI ACTAGT 1 cut(s) 293
Sse9I AATT 1 cut(s) 357
SsiI CCGC 1 cut(s) 144
SspMI CTAG 1 cut(s) 294
StyD4I CCNGG 1 cut(s) 48
TaaI ACNGT 3 cut(s) 11, 203, 399
TaiI ACGT 1 cut(s) 285
TaqI TCGA 1 cut(s) 307
TasI AATT 1 cut(s) 357
TatI WGTACW 1 cut(s) 203
TfiI GAWTC 3 cut(s) 93, 138, 222
TscAI CASTG 3 cut(s) 119, 124, 232
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 2 cut(s) 201, 387
TspRI CASTG 3 cut(s) 119, 124, 232
VneI GTGCAC 1 cut(s) 115
XapI RAATTY 1 cut(s) 357
XspI CTAG 1 cut(s) 294
ZrmI AGTACT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.