Rroxscaffold_1G00041630

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000467
Physical Location & Seq
Forward (+)
59513825 .. 59532887
19063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00041630.1

Sequence Viewer

Length: 1125 bp
ATGACTGCTCTCAAAATTTGCTGTGCGAACCTAAAAGATGTATGCATTTTAGGAATGGATCTATATAGCATGGACATCTCTGGAATGAGACTGGAGGAGTTGTTTTGTGCTGAAAATTGCTTCGATGGTTGGGTCAACATTTTTGCCCCGAATCTACAATACTTGTACTGGGGCAATCCAATTACTGAGAAGTGTTCCATCCAGAGCTTTCCTACGCCCAAAACATCTTGCATTGGTTGTTCGTTTCTGATCGGCATAACAAAGACAAATATTTTTCATAACAGTGTTATCAATCTTCTTTCCCATTCATGCCAAGCTGAAATCCTTAAGATATTCGATGACTACCTCGAGATTCTATCAGACATTTATGTTGAATTTGGTGGTGTACCTTTCTCATTTGGCAAACTTGAAACCTTGAAAATTGGGTACACAATGAAGCAGAGATATATCCCGGGTATAGCATGCCTGTTGAAGAGCTCTCCCGTAGTCCACACCCTCGACATTGAGTTTCTCTCTTTCGAAGAAAATGATAAGTGGAATAACATTATGTTGGATAATGCCAATTGCACTCAAGAGCAATACTGGGAAACTCAGGCTCAACATTTGATCCCCTTTCTTAGTCACCTAAAGGTGGTCGACATCGGCCTTGGTAACTTGATCTCTGAGAATGCAATCACTTTTGCGAAGTTTTTGCTTAAATATGGAAGAGGCCTGCAAAAAATGACTCTTAGGTTTTGGAGGAGCGGAAGTTCTCTTCCTCCGAATTCGCTAAATGATACCATTGATTTATTAAAGGGTTTCCCCAGGGCATCTGCAGGTCTTGAGTTCTCAAGTAAGGCTCAAGTGCTTAACTCACCTCACTATTACAATTTCTACCTGACTTTTTGCACGAGTAACCCGAAAAGTCCAAAACCAAATTTTCTTGGATATTGCAGCGATGTAACAATTGAGGGAAAGGATGACTTGATGAGAGATGACAAAGAAGATGAAATCGCACAAGTAGATGAGGAAAAGAGAGAAAGAGAGGTTGAAGAGATGAGTGTCCATGTTTCAAGTTCTAACATGGAGCATGAGGCTACAGTGGTCTCGTTAGAGAAATACCACCGGACATCCCACTGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

374

Amino Acids

42.61

Weight (kDa)

5.27

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 806
AccBSI CCGCTC 1 cut(s) 744
AccI GTMKAC 1 cut(s) 636
AciI CCGC 1 cut(s) 744
AclWI GGATC 2 cut(s) 66, 601
AcsI RAATTY 4 cut(s) 15, 374, 763, 916
AfaI GTAC 3 cut(s) 167, 387, 428
AfiI CCNNNNNNNGG 1 cut(s) 631
AflII CTTAAG 1 cut(s) 326
AgsI TTSAA 6 cut(s) 374, 410, 418, 472, 1031, 1053
AjnI CCWGG 1 cut(s) 803
AloI GAACNNNNNNTCC 2 cut(s) 733, 765
AluBI AGCT 3 cut(s) 207, 317, 477
AluI AGCT 3 cut(s) 207, 317, 477
Alw21I GWGCWC 1 cut(s) 479
Alw26I GTCTC 2 cut(s) 82, 1090
AlwI GGATC 2 cut(s) 66, 601
Ama87I CYCGRG 2 cut(s) 347, 451
AoxI GGCC 2 cut(s) 643, 709
ApeKI GCWGC 1 cut(s) 933
ApoI RAATTY 4 cut(s) 15, 374, 763, 916
AsuC2I CCSGG 2 cut(s) 452, 453
AsuHPI GGTGA 2 cut(s) 614, 846
AsuII TTCGAA 1 cut(s) 519
AvaI CYCGRG 2 cut(s) 347, 451
BanII GRGCYC 1 cut(s) 479
BauI CACGAG 1 cut(s) 889
Bbv12I GWGCWC 1 cut(s) 479
BbvI GCAGC 1 cut(s) 945
BccI CCATC 2 cut(s) 119, 206
BcgI CGANNNNNNTGC 2 cut(s) 673, 707
BciT130I CCWGG 1 cut(s) 805
BcnI CCSGG 2 cut(s) 452, 453
BcoDI GTCTC 2 cut(s) 82, 1090
BfmI CTRYAG 2 cut(s) 813, 1077
BfrI CTTAAG 1 cut(s) 326
BfuAI ACCTGC 1 cut(s) 806
BisI GCNGC 1 cut(s) 934
BlsI GCNGC 1 cut(s) 935
Bme1390I CCNGG 3 cut(s) 452, 453, 805
BmeT110I CYCGRG 2 cut(s) 347, 451
BmrFI CCNGG 3 cut(s) 452, 453, 805
BmrI ACTGGG 2 cut(s) 178, 592
BmsI GCATC 1 cut(s) 818
BmuI ACTGGG 2 cut(s) 178, 592
BplI GAGNNNNNCTC 2 cut(s) 497, 529
BpmI CTGGAG 1 cut(s) 113
Bpu14I TTCGAA 1 cut(s) 519
BpuEI CTTGAG 4 cut(s) 555, 814, 825, 842
BpuMI CCSGG 2 cut(s) 452, 453
BsaI GGTCTC 1 cut(s) 1090
BsaJI CCNNGG 4 cut(s) 451, 646, 803, 804
BsaWI WCCGGW 1 cut(s) 1104
BsaXI ACNNNNNCTCC 4 cut(s) 86, 116, 733, 763
Bsc4I CCNNNNNNNGG 1 cut(s) 631
Bse1I ACTGG 4 cut(s) 96, 173, 587, 1121
BseBI CCWGG 1 cut(s) 805
BseDI CCNNGG 4 cut(s) 451, 646, 803, 804
BseGI GGATG 3 cut(s) 198, 964, 1109
BseLI CCNNNNNNNGG 1 cut(s) 631
BseMII CTCAG 3 cut(s) 177, 605, 654
BseNI ACTGG 4 cut(s) 96, 173, 587, 1121
BseRI GAGGAG 2 cut(s) 110, 754
BseXI GCAGC 1 cut(s) 945
BshFI GGCC 2 cut(s) 645, 711
BsiHKAI GWGCWC 1 cut(s) 479
BsiHKCI CYCGRG 2 cut(s) 347, 451
BsiSI CCGG 2 cut(s) 452, 1105
BslI CCNNNNNNNGG 1 cut(s) 631
BsmAI GTCTC 2 cut(s) 82, 1090
BsmI GAATGC 1 cut(s) 673
BsnI GGCC 2 cut(s) 645, 711
Bso31I GGTCTC 1 cut(s) 1090
BsoBI CYCGRG 2 cut(s) 347, 451
Bsp119I TTCGAA 1 cut(s) 519
Bsp1286I GDGCHC 1 cut(s) 479
Bsp143I GATC 4 cut(s) 58, 249, 606, 657
BspACI CCGC 1 cut(s) 744
BspANI GGCC 2 cut(s) 645, 711
BspCNI CTCAG 3 cut(s) 178, 604, 655
BspMAI CTGCAG 1 cut(s) 817
BspMI ACCTGC 1 cut(s) 806
BspPI GGATC 2 cut(s) 66, 601
BspQI GCTCTTC 1 cut(s) 467
BspT104I TTCGAA 1 cut(s) 519
BspTI CTTAAG 1 cut(s) 326
BspTNI GGTCTC 1 cut(s) 1090
BsrBI CCGCTC 1 cut(s) 744
BsrI ACTGG 4 cut(s) 96, 173, 587, 1121
BssECI CCNNGG 4 cut(s) 451, 646, 803, 804
BssMI GATC 4 cut(s) 58, 249, 606, 657
BssSI CACGAG 1 cut(s) 889
BssT1I CCWWGG 1 cut(s) 646
Bst2BI CACGAG 1 cut(s) 889
Bst2UI CCWGG 1 cut(s) 805
Bst4CI ACNGT 2 cut(s) 284, 1081
Bst6I CTCTTC 4 cut(s) 467, 700, 759, 1026
BstAFI CTTAAG 1 cut(s) 326
BstBI TTCGAA 1 cut(s) 519
BstC8I GCNNGC 2 cut(s) 463, 713
BstDEI CTNAG 5 cut(s) 186, 591, 617, 663, 728
BstF5I GGATG 3 cut(s) 198, 964, 1109
BstKTI GATC 4 cut(s) 61, 252, 609, 660
BstMAI GTCTC 2 cut(s) 82, 1090
BstMBI GATC 4 cut(s) 58, 249, 606, 657
BstNI CCWGG 1 cut(s) 805
BstNSI RCATGY 1 cut(s) 465
BstSCI CCNGG 3 cut(s) 450, 451, 803
BstSFI CTRYAG 2 cut(s) 813, 1077
BstV1I GCAGC 1 cut(s) 945
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BsuRI GGCC 2 cut(s) 645, 711
BtgZI GCGATG 1 cut(s) 951
BtsCI GGATG 3 cut(s) 198, 964, 1109
BtsIMutI CAGTG 3 cut(s) 289, 1086, 1114
BveI ACCTGC 1 cut(s) 806
Cac8I GCNNGC 2 cut(s) 463, 713
Cfr9I CCCGGG 1 cut(s) 451
Csp6I GTAC 3 cut(s) 166, 386, 427
CviAII CATG 6 cut(s) 70, 309, 462, 1046, 1063, 1070
CviJI RGCY 8 cut(s) 207, 317, 477, 596, 645, 711, 839, 1076
CviKI_1 RGCY 8 cut(s) 207, 317, 477, 596, 645, 711, 839, 1076
CviQI GTAC 3 cut(s) 166, 386, 427
DdeI CTNAG 5 cut(s) 186, 591, 617, 663, 728
DpnI GATC 4 cut(s) 60, 251, 608, 659
DpnII GATC 4 cut(s) 58, 249, 606, 657
Eam1104I CTCTTC 4 cut(s) 467, 700, 759, 1026
EarI CTCTTC 4 cut(s) 467, 700, 759, 1026
Ecl136II GAGCTC 1 cut(s) 477
Eco130I CCWWGG 1 cut(s) 646
Eco147I AGGCCT 1 cut(s) 711
Eco24I GRGCYC 1 cut(s) 479
Eco31I GGTCTC 1 cut(s) 1090
Eco53kI GAGCTC 1 cut(s) 477
Eco88I CYCGRG 2 cut(s) 347, 451
EcoICRI GAGCTC 1 cut(s) 477
EcoRI GAATTC 1 cut(s) 763
EcoRII CCWGG 1 cut(s) 803
EcoT14I CCWWGG 1 cut(s) 646
EcoT22I ATGCAT 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 479
ErhI CCWWGG 1 cut(s) 646
FaeI CATG 6 cut(s) 73, 312, 465, 1049, 1066, 1073
FalI AAGNNNNNCTT 2 cut(s) 947, 979
FatI CATG 6 cut(s) 69, 308, 461, 1045, 1062, 1069
FblI GTMKAC 1 cut(s) 636
Fnu4HI GCNGC 1 cut(s) 934
FokI GGATG 3 cut(s) 185, 971, 1096
FriOI GRGCYC 1 cut(s) 479
Fsp4HI GCNGC 1 cut(s) 934
GluI GCNGC 1 cut(s) 934
GsuI CTGGAG 1 cut(s) 113
HaeIII GGCC 2 cut(s) 645, 711
HapII CCGG 2 cut(s) 452, 1105
Hin1II CATG 6 cut(s) 73, 312, 465, 1049, 1066, 1073
HincII GTYRAC 2 cut(s) 136, 637
HindII GTYRAC 2 cut(s) 136, 637
HinfI GANTC 3 cut(s) 151, 352, 724
HpaII CCGG 2 cut(s) 452, 1105
HphI GGTGA 2 cut(s) 614, 846
Hpy166II GTNNAC 5 cut(s) 136, 386, 429, 490, 637
Hpy188I TCNGA 4 cut(s) 249, 361, 664, 762
Hpy188III TCNNGA 5 cut(s) 81, 202, 349, 572, 821
Hpy8I GTNNAC 5 cut(s) 136, 386, 429, 490, 637
HpyCH4III ACNGT 2 cut(s) 284, 1081
HpyCH4V TGCA 8 cut(s) 45, 231, 567, 671, 715, 815, 888, 933
HpyF3I CTNAG 5 cut(s) 186, 591, 617, 663, 728
Hsp92II CATG 6 cut(s) 73, 312, 465, 1049, 1066, 1073
Kzo9I GATC 4 cut(s) 58, 249, 606, 657
LguI GCTCTTC 1 cut(s) 467
LmnI GCTCC 2 cut(s) 741, 1066
Lsp1109I GCAGC 1 cut(s) 945
LweI GCATC 1 cut(s) 818
MaeIII GTNAC 4 cut(s) 620, 650, 893, 940
MalI GATC 4 cut(s) 60, 251, 608, 659
MbiI CCGCTC 1 cut(s) 744
MboI GATC 4 cut(s) 58, 249, 606, 657
MboII GAAGA 7 cut(s) 287, 484, 533, 717, 746, 995, 1043
MfeI CAATTG 2 cut(s) 562, 945
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 479
MlyI GAGTC 1 cut(s) 718
MmeI TCCRAC 1 cut(s) 531
Mph1103I ATGCAT 1 cut(s) 47
MseI TTAA 4 cut(s) 327, 696, 791, 849
MslI CAYNNNNRTG 1 cut(s) 282
MspCI CTTAAG 1 cut(s) 326
MspI CCGG 2 cut(s) 452, 1105
MspR9I CCNGG 3 cut(s) 452, 453, 805
MunI CAATTG 2 cut(s) 562, 945
Mva1269I GAATGC 1 cut(s) 673
MvaI CCWGG 1 cut(s) 805
NciI CCSGG 2 cut(s) 452, 453
NdeII GATC 4 cut(s) 58, 249, 606, 657
NlaIII CATG 6 cut(s) 73, 312, 465, 1049, 1066, 1073
NmuCI GTSAC 1 cut(s) 620
NsiI ATGCAT 1 cut(s) 47
NspI RCATGY 1 cut(s) 465
NspV TTCGAA 1 cut(s) 519
PaeI GCATGC 1 cut(s) 465
PaeR7I CTCGAG 1 cut(s) 347
PasI CCCWGGG 1 cut(s) 804
PceI AGGCCT 1 cut(s) 711
PciSI GCTCTTC 1 cut(s) 467
PcsI WCGNNNNNNNCGW 1 cut(s) 896
PctI GAATGC 1 cut(s) 673
PfeI GAWTC 2 cut(s) 151, 352
PkrI GCNGC 1 cut(s) 935
PleI GAGTC 1 cut(s) 718
PpsI GAGTC 1 cut(s) 718
Psp124BI GAGCTC 1 cut(s) 479
Psp6I CCWGG 1 cut(s) 803
PspGI CCWGG 1 cut(s) 803
PstI CTGCAG 1 cut(s) 817
PsuI RGATCY 1 cut(s) 58
RsaI GTAC 3 cut(s) 167, 387, 428
RsaNI GTAC 3 cut(s) 166, 386, 427
RseI CAYNNNNRTG 1 cut(s) 282
SacI GAGCTC 1 cut(s) 479
SalI GTCGAC 1 cut(s) 635
SapI GCTCTTC 1 cut(s) 467
SaqAI TTAA 4 cut(s) 327, 696, 791, 849
SatI GCNGC 1 cut(s) 934
Sau3AI GATC 4 cut(s) 58, 249, 606, 657
SchI GAGTC 1 cut(s) 718
ScrFI CCNGG 3 cut(s) 452, 453, 805
SduI GDGCHC 1 cut(s) 479
SfaNI GCATC 1 cut(s) 818
SfcI CTRYAG 2 cut(s) 813, 1077
Sfr274I CTCGAG 1 cut(s) 347
SfuI TTCGAA 1 cut(s) 519
SlaI CTCGAG 1 cut(s) 347
SmaI CCCGGG 1 cut(s) 453
SmiMI CAYNNNNRTG 1 cut(s) 282
SmlI CTYRAG 6 cut(s) 326, 347, 570, 821, 829, 840
SmoI CTYRAG 6 cut(s) 326, 347, 570, 821, 829, 840
SphI GCATGC 1 cut(s) 465
SseBI AGGCCT 1 cut(s) 711
SsiI CCGC 1 cut(s) 744
SspI AATATT 1 cut(s) 271
SstI GAGCTC 1 cut(s) 479
StuI AGGCCT 1 cut(s) 711
StyD4I CCNGG 3 cut(s) 450, 451, 803
StyI CCWWGG 1 cut(s) 646
TaaI ACNGT 2 cut(s) 284, 1081
TaqI TCGA 6 cut(s) 123, 336, 348, 498, 519, 636
TatI WGTACW 1 cut(s) 165
TfiI GAWTC 2 cut(s) 151, 352
Tru1I TTAA 4 cut(s) 327, 696, 791, 849
Tru9I TTAA 4 cut(s) 327, 696, 791, 849
TscAI CASTG 3 cut(s) 289, 1086, 1121
TseFI GTSAC 1 cut(s) 620
TseI GCWGC 1 cut(s) 933
Tsp45I GTSAC 1 cut(s) 620
TspDTI ATGAA 4 cut(s) 266, 297, 449, 1002
TspMI CCCGGG 1 cut(s) 451
TspRI CASTG 3 cut(s) 289, 1086, 1121
Vha464I CTTAAG 1 cut(s) 326
XapI RAATTY 4 cut(s) 15, 374, 763, 916
XceI RCATGY 1 cut(s) 465
XhoI CTCGAG 1 cut(s) 347
XmaI CCCGGG 1 cut(s) 451
XmiI GTMKAC 1 cut(s) 636
Zsp2I ATGCAT 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.