Rh2CG269400

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000467
Physical Location & Seq
Reverse (-)
29204701 .. 29205429
729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG269400.1

Sequence Viewer

Length: 729 bp
ATGTGCCACTCATTAAGGAGTAGTAGCTGTGGGAATTTAAAGGCATGGCTAGGGTTTCCCTCGTCTTATGTTGTCGGGTCTTATCTCCGTTCACTTCATACTTTGTCTCTAACTCGTGTGGATTTCTTGGATAGTAGTGCTTTGGGTGTGGATTTTTTTGCTGGTTCTTCATTCCCTTATCTCGAAAAGTTGAACTTAGAGCGCTGTAGAGGGAGGAGTGATCTCAAAATTTGCTGTCCAAACCTAAAACATGTAGAGGTATTTGATATGGAATTAAATAGTCTGGACATCTCCGGAATGAGACTGGAGGAGTTGCGAGTCTGGTTTTGTTTTCAAGAGTATATCAATGGAAGTTGGGTCAACATTTTTGCACCGAATCTACAATCATTCTCTTGGGGTTATTCAGGCATTACTGAAAGGTGTTCGATCCAGAGCTTTCCTATGCTCAAAAGATCTTTCATAAAGTCCCCCCTCACAACGAAGAAGATTAATAATAACAGTGTTGTCGATCTTCTTTCTGCTTCATCCCCAGTTGAAGACTTTATAATATCCAATCACTACCTCCAGATTCTATCAGAAATATATTCTGAATTAGGCGGTCTACCATTCTCATTTATGAAACTGAAAACCTTGAGAATTGGGAGTCCAATGAAGCAAAGATATATCCCTGGTATGGCATGCCTGTTCAAGAGCTCTCCCGTGGTCCACAACCTCGAGATTTGTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

242

Amino Acids

27.44

Weight (kDa)

8.55

Isoelectric Point (pI)

58.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 545
AccI GTMKAC 1 cut(s) 601
AccIII TCCGGA 1 cut(s) 293
AciI CCGC 1 cut(s) 597
AclWI GGATC 1 cut(s) 421
AcsI RAATTY 2 cut(s) 34, 228
AfeI AGCGCT 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 673
AflIII ACRYGT 1 cut(s) 250
AgsI TTSAA 4 cut(s) 193, 335, 536, 688
AjnI CCWGG 1 cut(s) 667
AluBI AGCT 3 cut(s) 27, 435, 693
AluI AGCT 3 cut(s) 27, 435, 693
Alw21I GWGCWC 1 cut(s) 695
Alw26I GTCTC 2 cut(s) 111, 295
AlwI GGATC 1 cut(s) 421
Ama87I CYCGRG 1 cut(s) 713
Aor13HI TCCGGA 1 cut(s) 293
Aor51HI AGCGCT 1 cut(s) 203
ApoI RAATTY 2 cut(s) 34, 228
AseI ATTAAT 1 cut(s) 489
AspLEI GCGC 1 cut(s) 204
AspS9I GGNCC 1 cut(s) 703
AvaI CYCGRG 1 cut(s) 713
AvaII GGWCC 1 cut(s) 703
BanII GRGCYC 1 cut(s) 695
BauI CACGAG 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 543
Bbv12I GWGCWC 1 cut(s) 695
BciT130I CCWGG 1 cut(s) 669
BcoDI GTCTC 2 cut(s) 111, 295
BfaI CTAG 1 cut(s) 50
BfmI CTRYAG 1 cut(s) 205
BfoI RGCGCY 1 cut(s) 205
BglII AGATCT 1 cut(s) 452
Bme1390I CCNGG 1 cut(s) 669
Bme18I GGWCC 1 cut(s) 703
BmeT110I CYCGRG 1 cut(s) 713
BmgT120I GGNCC 1 cut(s) 703
BmrFI CCNGG 1 cut(s) 669
BmrI ACTGGG 1 cut(s) 524
BmuI ACTGGG 1 cut(s) 524
BpiI GAAGAC 1 cut(s) 543
BpmI CTGGAG 2 cut(s) 326, 548
BpuEI CTTGAG 1 cut(s) 652
BsaJI CCNNGG 2 cut(s) 667, 699
BsaWI WCCGGW 1 cut(s) 293
Bsc4I CCNNNNNNNGG 1 cut(s) 673
Bse1I ACTGG 2 cut(s) 309, 530
BseAI TCCGGA 1 cut(s) 293
BseBI CCWGG 1 cut(s) 669
BseDI CCNNGG 2 cut(s) 667, 699
BseGI GGATG 1 cut(s) 524
BseLI CCNNNNNNNGG 1 cut(s) 673
BseNI ACTGG 2 cut(s) 309, 530
BseRI GAGGAG 2 cut(s) 229, 323
BsiHKAI GWGCWC 1 cut(s) 695
BsiHKCI CYCGRG 1 cut(s) 713
BsiSI CCGG 1 cut(s) 294
BslFI GGGAC 1 cut(s) 451
BslI CCNNNNNNNGG 1 cut(s) 673
BsmAI GTCTC 2 cut(s) 111, 295
BsmFI GGGAC 1 cut(s) 451
BsoBI CYCGRG 1 cut(s) 713
Bsp1286I GDGCHC 1 cut(s) 695
Bsp13I TCCGGA 1 cut(s) 293
Bsp143I GATC 4 cut(s) 220, 426, 452, 508
BspACI CCGC 1 cut(s) 597
BspEI TCCGGA 1 cut(s) 293
BspPI GGATC 1 cut(s) 421
BsrI ACTGG 2 cut(s) 309, 530
BssECI CCNNGG 2 cut(s) 667, 699
BssMI GATC 4 cut(s) 220, 426, 452, 508
BssSI CACGAG 1 cut(s) 114
Bst2BI CACGAG 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 669
Bst4CI ACNGT 1 cut(s) 500
BstC8I GCNNGC 1 cut(s) 679
BstDEI CTNAG 1 cut(s) 196
BstDSI CCRYGG 1 cut(s) 699
BstF5I GGATG 1 cut(s) 524
BstH2I RGCGCY 1 cut(s) 205
BstHHI GCGC 1 cut(s) 204
BstKTI GATC 4 cut(s) 223, 429, 455, 511
BstMAI GTCTC 2 cut(s) 111, 295
BstMBI GATC 4 cut(s) 220, 426, 452, 508
BstNI CCWGG 1 cut(s) 669
BstNSI RCATGY 2 cut(s) 254, 681
BstSCI CCNGG 1 cut(s) 667
BstSFI CTRYAG 1 cut(s) 205
BstV2I GAAGAC 1 cut(s) 543
BstX2I RGATCY 1 cut(s) 452
BstYI RGATCY 1 cut(s) 452
BtgI CCRYGG 1 cut(s) 699
BtsCI GGATG 1 cut(s) 524
BtsIMutI CAGTG 1 cut(s) 505
Cac8I GCNNGC 1 cut(s) 679
CfoI GCGC 1 cut(s) 204
Cfr13I GGNCC 1 cut(s) 703
CviAII CATG 3 cut(s) 45, 251, 678
CviJI RGCY 4 cut(s) 27, 49, 435, 693
CviKI_1 RGCY 4 cut(s) 27, 49, 435, 693
DdeI CTNAG 1 cut(s) 196
DpnI GATC 4 cut(s) 222, 428, 454, 510
DpnII GATC 4 cut(s) 220, 426, 452, 508
DraI TTTAAA 1 cut(s) 39
Ecl136II GAGCTC 1 cut(s) 693
Eco24I GRGCYC 1 cut(s) 695
Eco47I GGWCC 1 cut(s) 703
Eco47III AGCGCT 1 cut(s) 203
Eco53kI GAGCTC 1 cut(s) 693
Eco88I CYCGRG 1 cut(s) 713
EcoICRI GAGCTC 1 cut(s) 693
EcoRII CCWGG 1 cut(s) 667
EcoT38I GRGCYC 1 cut(s) 695
FaeI CATG 3 cut(s) 48, 254, 681
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FaqI GGGAC 1 cut(s) 451
FatI CATG 3 cut(s) 44, 250, 677
FblI GTMKAC 1 cut(s) 601
FokI GGATG 1 cut(s) 511
FriOI GRGCYC 1 cut(s) 695
FspBI CTAG 1 cut(s) 50
GlaI GCGC 1 cut(s) 203
GsuI CTGGAG 2 cut(s) 326, 548
HaeII RGCGCY 1 cut(s) 205
HapII CCGG 1 cut(s) 294
HhaI GCGC 1 cut(s) 204
Hin1II CATG 3 cut(s) 48, 254, 681
Hin6I GCGC 1 cut(s) 202
HinP1I GCGC 1 cut(s) 202
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HinfI GANTC 4 cut(s) 318, 376, 568, 643
HpaII CCGG 1 cut(s) 294
Hpy166II GTNNAC 4 cut(s) 92, 361, 602, 706
Hpy188I TCNGA 2 cut(s) 577, 589
Hpy188III TCNNGA 8 cut(s) 182, 284, 294, 335, 430, 565, 688, 715
Hpy8I GTNNAC 4 cut(s) 92, 361, 602, 706
HpyCH4III ACNGT 1 cut(s) 500
HpyCH4V TGCA 1 cut(s) 371
HpyF3I CTNAG 1 cut(s) 196
Hsp92II CATG 3 cut(s) 48, 254, 681
HspAI GCGC 1 cut(s) 202
Kpn2I TCCGGA 1 cut(s) 293
Kzo9I GATC 4 cut(s) 220, 426, 452, 508
MaeI CTAG 1 cut(s) 50
MalI GATC 4 cut(s) 222, 428, 454, 510
MboI GATC 4 cut(s) 220, 426, 452, 508
MboII GAAGA 5 cut(s) 159, 493, 496, 503, 548
MflI RGATCY 1 cut(s) 452
MhlI GDGCHC 1 cut(s) 695
MluCI AATT 5 cut(s) 34, 228, 272, 590, 636
MlyI GAGTC 2 cut(s) 327, 652
MnlI CCTC 8 cut(s) 70, 203, 207, 250, 301, 482, 572, 722
MroI TCCGGA 1 cut(s) 293
MseI TTAA 4 cut(s) 14, 38, 275, 489
MspI CCGG 1 cut(s) 294
MspR9I CCNGG 1 cut(s) 669
MvaI CCWGG 1 cut(s) 669
NdeII GATC 4 cut(s) 220, 426, 452, 508
NlaIII CATG 3 cut(s) 48, 254, 681
NspI RCATGY 2 cut(s) 254, 681
PaeI GCATGC 1 cut(s) 681
PaeR7I CTCGAG 1 cut(s) 713
PciI ACATGT 1 cut(s) 250
PfeI GAWTC 2 cut(s) 376, 568
PleI GAGTC 2 cut(s) 326, 651
PpsI GAGTC 2 cut(s) 326, 651
PscI ACATGT 1 cut(s) 250
PshBI ATTAAT 1 cut(s) 489
PsiI TTATAA 1 cut(s) 545
Psp124BI GAGCTC 1 cut(s) 695
Psp6I CCWGG 1 cut(s) 667
PspGI CCWGG 1 cut(s) 667
PspPI GGNCC 1 cut(s) 703
PsuI RGATCY 1 cut(s) 452
SacI GAGCTC 1 cut(s) 695
SaqAI TTAA 4 cut(s) 14, 38, 275, 489
Sau3AI GATC 4 cut(s) 220, 426, 452, 508
Sau96I GGNCC 1 cut(s) 703
SchI GAGTC 2 cut(s) 327, 652
ScrFI CCNGG 1 cut(s) 669
SduI GDGCHC 1 cut(s) 695
SetI ASST 9 cut(s) 29, 246, 261, 422, 437, 564, 632, 695, 714
SfcI CTRYAG 1 cut(s) 205
Sfr274I CTCGAG 1 cut(s) 713
SinI GGWCC 1 cut(s) 703
SlaI CTCGAG 1 cut(s) 713
SmlI CTYRAG 2 cut(s) 631, 713
SmoI CTYRAG 2 cut(s) 631, 713
SphI GCATGC 1 cut(s) 681
Sse9I AATT 5 cut(s) 34, 228, 272, 590, 636
SsiI CCGC 1 cut(s) 597
SspMI CTAG 1 cut(s) 50
SstI GAGCTC 1 cut(s) 695
StyD4I CCNGG 1 cut(s) 667
TaaI ACNGT 1 cut(s) 500
TaqI TCGA 4 cut(s) 183, 425, 507, 714
TasI AATT 5 cut(s) 34, 228, 272, 590, 636
TfiI GAWTC 2 cut(s) 376, 568
Tru1I TTAA 4 cut(s) 14, 38, 275, 489
Tru9I TTAA 4 cut(s) 14, 38, 275, 489
TscAI CASTG 1 cut(s) 505
TspDTI ATGAA 6 cut(s) 86, 159, 448, 513, 632, 665
TspGWI ACGGA 1 cut(s) 77
TspRI CASTG 1 cut(s) 505
VpaK11BI GGWCC 1 cut(s) 703
VspI ATTAAT 1 cut(s) 489
XapI RAATTY 2 cut(s) 34, 228
XceI RCATGY 2 cut(s) 254, 681
XhoI CTCGAG 1 cut(s) 713
XmiI GTMKAC 1 cut(s) 601
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.