Rh3CG027300

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000467
Physical Location & Seq
Forward (+)
1900588 .. 1901962
1375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG027300.1

Sequence Viewer

Length: 534 bp
ATGTGTTCGCGCCTCAATATTCTCTTCCCAAGCGGCAGTTTAGGTCAATTTCGAAGAGTTGGGGAAGATCCAAACGATTCTTGTTTTGGTAGGGTTGAGGAGCTAGTACTGGACATCTCCTTGAGTAGTGAAAACACATCTGTTTTGCCTCGATGTCAACTTAAGTGCCAATCATTAAGGAGTAGTAGCTGTGGGAATTCAAAGGCATGGCTAGGGTTTACCTCTTCTTACGTCGTTTGCTCTTATCTCCTTTCACTTCAATCCTTGTCTCTTACTCGTATGGATTTCTTGGATAGTAGTCATAGTACTGGTGCTTTGGGTGTGGATTTATTTTCTGGTTCTTCATGCCCTTGTCTCGAAAAATTGAATATAAAGAGGTGTAGAGGAATGAGTGATCTCAAAATTTCTTGTCGAAACCTAAAAGATATACGTGTTCTTGATATGGGTTTAAAGAGTATGGACATCTCCAGAATGAGATTAGAAGGTATAGACATGATGCAGAACGGATGGCGGCCCAATTTGAGGAACAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

177

Amino Acids

19.68

Weight (kDa)

8.74

Isoelectric Point (pI)

54.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 10
AciI CCGC 2 cut(s) 33, 511
AclWI GGATC 1 cut(s) 62
AcsI RAATTY 2 cut(s) 196, 402
AfaI GTAC 2 cut(s) 108, 307
AfiI CCNNNNNNNGG 1 cut(s) 522
AflII CTTAAG 1 cut(s) 161
AflIII ACRYGT 1 cut(s) 430
AgsI TTSAA 3 cut(s) 201, 260, 367
AluBI AGCT 2 cut(s) 103, 189
AluI AGCT 2 cut(s) 103, 189
Alw26I GTCTC 2 cut(s) 273, 359
AlwI GGATC 1 cut(s) 62
AoxI GGCC 1 cut(s) 512
ApoI RAATTY 2 cut(s) 196, 402
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 1 cut(s) 513
AsuII TTCGAA 1 cut(s) 52
BccI CCATC 1 cut(s) 501
BcoDI GTCTC 2 cut(s) 273, 359
BfaI CTAG 2 cut(s) 104, 212
BfrI CTTAAG 1 cut(s) 161
BisI GCNGC 2 cut(s) 34, 512
BlsI GCNGC 2 cut(s) 35, 513
BmcAI AGTACT 2 cut(s) 108, 307
BmgT120I GGNCC 1 cut(s) 513
BmsI GCATC 1 cut(s) 486
BpmI CTGGAG 1 cut(s) 451
Bpu14I TTCGAA 1 cut(s) 52
BpuEI CTTGAG 1 cut(s) 142
BsaAI YACGTR 1 cut(s) 431
Bsc4I CCNNNNNNNGG 1 cut(s) 522
Bse1I ACTGG 2 cut(s) 114, 313
BseGI GGATG 1 cut(s) 512
BseLI CCNNNNNNNGG 1 cut(s) 522
BseNI ACTGG 2 cut(s) 114, 313
BseRI GAGGAG 1 cut(s) 113
Bsh1236I CGCG 1 cut(s) 10
BshFI GGCC 1 cut(s) 514
BslI CCNNNNNNNGG 1 cut(s) 522
BsmAI GTCTC 2 cut(s) 273, 359
BsnI GGCC 1 cut(s) 514
Bsp119I TTCGAA 1 cut(s) 52
Bsp143I GATC 2 cut(s) 67, 394
BspACI CCGC 2 cut(s) 33, 511
BspANI GGCC 1 cut(s) 514
BspFNI CGCG 1 cut(s) 10
BspPI GGATC 1 cut(s) 62
BspT104I TTCGAA 1 cut(s) 52
BspTI CTTAAG 1 cut(s) 161
BsrI ACTGG 2 cut(s) 114, 313
BssMI GATC 2 cut(s) 67, 394
Bst4CI ACNGT 1 cut(s) 530
Bst6I CTCTTC 3 cut(s) 29, 49, 229
BstAFI CTTAAG 1 cut(s) 161
BstBAI YACGTR 1 cut(s) 431
BstBI TTCGAA 1 cut(s) 52
BstF5I GGATG 1 cut(s) 512
BstFNI CGCG 1 cut(s) 10
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 2 cut(s) 70, 397
BstMAI GTCTC 2 cut(s) 273, 359
BstMBI GATC 2 cut(s) 67, 394
BstUI CGCG 1 cut(s) 10
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
BsuRI GGCC 1 cut(s) 514
BtsCI GGATG 1 cut(s) 512
CfoI GCGC 1 cut(s) 12
Cfr13I GGNCC 1 cut(s) 513
Csp6I GTAC 2 cut(s) 107, 306
CviAII CATG 3 cut(s) 207, 345, 493
CviJI RGCY 4 cut(s) 103, 189, 211, 514
CviKI_1 RGCY 4 cut(s) 103, 189, 211, 514
CviQI GTAC 2 cut(s) 107, 306
DpnI GATC 2 cut(s) 69, 396
DpnII GATC 2 cut(s) 67, 394
DraI TTTAAA 1 cut(s) 450
Eam1104I CTCTTC 3 cut(s) 29, 49, 229
EarI CTCTTC 3 cut(s) 29, 49, 229
EcoRI GAATTC 1 cut(s) 196
FaeI CATG 3 cut(s) 210, 348, 496
FatI CATG 3 cut(s) 206, 344, 492
Fnu4HI GCNGC 2 cut(s) 34, 512
FokI GGATG 1 cut(s) 519
Fsp4HI GCNGC 2 cut(s) 34, 512
FspBI CTAG 2 cut(s) 104, 212
GlaI GCGC 1 cut(s) 11
GluI GCNGC 2 cut(s) 34, 512
GsuI CTGGAG 1 cut(s) 451
HaeIII GGCC 1 cut(s) 514
HhaI GCGC 1 cut(s) 12
Hin1II CATG 3 cut(s) 210, 348, 496
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HincII GTYRAC 1 cut(s) 158
HindII GTYRAC 1 cut(s) 158
HinfI GANTC 1 cut(s) 77
Hpy166II GTNNAC 2 cut(s) 158, 219
Hpy188III TCNNGA 3 cut(s) 356, 437, 468
Hpy8I GTNNAC 2 cut(s) 158, 219
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 476
HpyCH4III ACNGT 1 cut(s) 530
HpyCH4IV ACGT 2 cut(s) 231, 430
HpyCH4V TGCA 1 cut(s) 499
HpySE526I ACGT 2 cut(s) 231, 430
Hsp92II CATG 3 cut(s) 210, 348, 496
HspAI GCGC 1 cut(s) 10
Kzo9I GATC 2 cut(s) 67, 394
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 4 cut(s) 95, 294, 321, 481
LweI GCATC 1 cut(s) 486
MaeI CTAG 2 cut(s) 104, 212
MaeII ACGT 2 cut(s) 231, 430
MalI GATC 2 cut(s) 69, 396
MboI GATC 2 cut(s) 67, 394
MboII GAAGA 5 cut(s) 16, 66, 77, 216, 333
MflI RGATCY 1 cut(s) 67
MluCI AATT 5 cut(s) 47, 196, 362, 402, 517
MnlI CCTC 7 cut(s) 23, 91, 159, 232, 369, 377, 516
MseI TTAA 3 cut(s) 162, 176, 449
MspCI CTTAAG 1 cut(s) 161
MvnI CGCG 1 cut(s) 10
NdeII GATC 2 cut(s) 67, 394
NlaIII CATG 3 cut(s) 210, 348, 496
NspV TTCGAA 1 cut(s) 52
PfeI GAWTC 1 cut(s) 77
PkrI GCNGC 2 cut(s) 35, 513
Ppu21I YACGTR 1 cut(s) 431
PspPI GGNCC 1 cut(s) 513
PsuI RGATCY 1 cut(s) 67
RsaI GTAC 2 cut(s) 108, 307
RsaNI GTAC 2 cut(s) 107, 306
SaqAI TTAA 3 cut(s) 162, 176, 449
SatI GCNGC 2 cut(s) 34, 512
Sau3AI GATC 2 cut(s) 67, 394
Sau96I GGNCC 1 cut(s) 513
ScaI AGTACT 2 cut(s) 108, 307
SetI ASST 9 cut(s) 46, 105, 191, 224, 234, 380, 420, 433, 487
SfaNI GCATC 1 cut(s) 486
SfuI TTCGAA 1 cut(s) 52
SmlI CTYRAG 2 cut(s) 121, 161
SmoI CTYRAG 2 cut(s) 121, 161
Sse9I AATT 5 cut(s) 47, 196, 362, 402, 517
SsiI CCGC 2 cut(s) 33, 511
SspI AATATT 1 cut(s) 19
SspMI CTAG 2 cut(s) 104, 212
TaaI ACNGT 1 cut(s) 530
TaiI ACGT 2 cut(s) 234, 433
TaqI TCGA 4 cut(s) 52, 151, 357, 412
TasI AATT 5 cut(s) 47, 196, 362, 402, 517
TatI WGTACW 2 cut(s) 106, 305
TauI GCSGC 2 cut(s) 36, 514
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 3 cut(s) 162, 176, 449
Tru9I TTAA 3 cut(s) 162, 176, 449
TspDTI ATGAA 1 cut(s) 333
TspGWI ACGGA 1 cut(s) 519
Vha464I CTTAAG 1 cut(s) 161
XapI RAATTY 2 cut(s) 196, 402
XspI CTAG 2 cut(s) 104, 212
ZrmI AGTACT 2 cut(s) 108, 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.