Rorug02G0214300

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000467
Physical Location & Seq
Forward (+)
20486238 .. 20486748
511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0214300.1

Sequence Viewer

Length: 447 bp
ATGGTGGTCCGATGGGCTGCGAAGACTCGAGCTGGTCTCTCATCAGCGTCAAGCGGCGTTGGGCTGTTCGCTCTGGGTGAGGTCGGATGGGGACTGGTTGTTGGCTGGGGTCGAGGATATCTGGGTTCAGATCCGATCGGGGACAGTTTGGAAGTGATGGAGGGCTGTGATCAAGCACTCTCTGAGGGTGTGGTGAGTGATCCCGGGGGCTATGCTAGATCGGGATCGGTTTCAGGCCAAGGAACTGTTGCGGCTGCTGGAGGGGCGGCTCGGACAGCGAGTGTCTGCGGCGGCGGCGGCATGGCTGATGGATCGTGGCTGGAAAGATATGTGTGGGCTCATTGGGTTAGGGTTTTGGTTTACCCTACTCTTTGGGCCTGCATTTGGAGTGGATGGGTTGCATGGGCCTTGATCCGGTCTGTGGGCTGGATTACCCTTATGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

148

Amino Acids

15.32

Weight (kDa)

5.69

Isoelectric Point (pI)

27.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 54, 251, 266, 288, 291, 294, 297
AclWI GGATC 5 cut(s) 125, 194, 232, 319, 406
AfiI CCNNNNNNNGG 3 cut(s) 384, 414, 421
AluBI AGCT 1 cut(s) 32
AluI AGCT 1 cut(s) 32
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 5 cut(s) 125, 194, 232, 319, 406
Ama87I CYCGRG 2 cut(s) 27, 203
AoxI GGCC 3 cut(s) 235, 375, 405
ApeKI GCWGC 2 cut(s) 17, 254
AspS9I GGNCC 3 cut(s) 7, 375, 405
AsuC2I CCSGG 2 cut(s) 204, 205
AsuHPI GGTGA 2 cut(s) 89, 205
AvaI CYCGRG 2 cut(s) 27, 203
AvaII GGWCC 1 cut(s) 7
BanII GRGCYC 1 cut(s) 340
BbsI GAAGAC 1 cut(s) 29
BbvI GCAGC 2 cut(s) 4, 241
BccI CCATC 5 cut(s) 6, 81, 151, 302, 387
BclI TGATCA 1 cut(s) 169
BcnI CCSGG 2 cut(s) 204, 205
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 1 cut(s) 216
BfmI CTRYAG 1 cut(s) 443
BisI GCNGC 9 cut(s) 18, 55, 252, 255, 267, 289, 292, 295, 298
BlsI GCNGC 9 cut(s) 19, 56, 253, 256, 268, 290, 293, 296, 299
Bme1390I CCNGG 2 cut(s) 204, 205
Bme18I GGWCC 1 cut(s) 7
BmeT110I CYCGRG 2 cut(s) 27, 203
BmgT120I GGNCC 3 cut(s) 7, 375, 405
BmrFI CCNGG 2 cut(s) 204, 205
BpiI GAAGAC 1 cut(s) 29
BplI GAGNNNNNCTC 2 cut(s) 21, 53
BpmI CTGGAG 1 cut(s) 279
BpuMI CCSGG 2 cut(s) 204, 205
BsaBI GATNNNNATC 1 cut(s) 223
BsaI GGTCTC 1 cut(s) 41
BsaJI CCNNGG 3 cut(s) 203, 204, 238
BsaWI WCCGGW 1 cut(s) 414
Bsc4I CCNNNNNNNGG 3 cut(s) 384, 414, 421
Bse1I ACTGG 1 cut(s) 99
Bse8I GATNNNNATC 1 cut(s) 223
BseDI CCNNGG 3 cut(s) 203, 204, 238
BseGI GGATG 2 cut(s) 92, 398
BseJI GATNNNNATC 1 cut(s) 223
BseLI CCNNNNNNNGG 3 cut(s) 384, 414, 421
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 1 cut(s) 99
BseXI GCAGC 2 cut(s) 4, 241
BseYI CCCAGC 1 cut(s) 105
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 3 cut(s) 237, 377, 407
BsiEI CGRYCG 1 cut(s) 138
BsiHKCI CYCGRG 2 cut(s) 27, 203
BsiSI CCGG 2 cut(s) 204, 415
BslFI GGGAC 2 cut(s) 105, 155
BslI CCNNNNNNNGG 3 cut(s) 384, 414, 421
BsmAI GTCTC 1 cut(s) 41
BsmFI GGGAC 2 cut(s) 105, 155
BsnI GGCC 3 cut(s) 237, 377, 407
Bso31I GGTCTC 1 cut(s) 41
BsoBI CYCGRG 2 cut(s) 27, 203
Bsp1286I GDGCHC 1 cut(s) 340
Bsp143I GATC 8 cut(s) 130, 135, 169, 199, 218, 224, 311, 411
BspACI CCGC 7 cut(s) 54, 251, 266, 288, 291, 294, 297
BspANI GGCC 3 cut(s) 237, 377, 407
BspCNI CTCAG 1 cut(s) 175
BspPI GGATC 5 cut(s) 125, 194, 232, 319, 406
BspTNI GGTCTC 1 cut(s) 41
BsrI ACTGG 1 cut(s) 99
BssECI CCNNGG 3 cut(s) 203, 204, 238
BssMI GATC 8 cut(s) 130, 135, 169, 199, 218, 224, 311, 411
BssT1I CCWWGG 1 cut(s) 238
Bst4CI ACNGT 2 cut(s) 146, 247
BstC8I GCNNGC 1 cut(s) 379
BstDEI CTNAG 1 cut(s) 183
BstF5I GGATG 2 cut(s) 92, 398
BstKTI GATC 8 cut(s) 133, 138, 172, 202, 221, 227, 314, 414
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 8 cut(s) 130, 135, 169, 199, 218, 224, 311, 411
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 4 cut(s) 263, 275, 294, 297
BstSCI CCNGG 2 cut(s) 202, 203
BstSFI CTRYAG 1 cut(s) 443
BstV1I GCAGC 2 cut(s) 4, 241
BstV2I GAAGAC 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BsuRI GGCC 3 cut(s) 237, 377, 407
BtsCI GGATG 2 cut(s) 92, 398
Cac8I GCNNGC 1 cut(s) 379
Cfr13I GGNCC 3 cut(s) 7, 375, 405
Cfr9I CCCGGG 1 cut(s) 203
CseI GACGC 1 cut(s) 36
CviAII CATG 2 cut(s) 301, 402
DdeI CTNAG 1 cut(s) 183
DpnI GATC 8 cut(s) 132, 137, 171, 201, 220, 226, 313, 413
DpnII GATC 8 cut(s) 130, 135, 169, 199, 218, 224, 311, 411
Eco130I CCWWGG 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 340
Eco31I GGTCTC 1 cut(s) 41
Eco32I GATATC 1 cut(s) 119
Eco47I GGWCC 1 cut(s) 7
Eco88I CYCGRG 2 cut(s) 27, 203
EcoRV GATATC 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 238
EcoT38I GRGCYC 1 cut(s) 340
ErhI CCWWGG 1 cut(s) 238
FaeI CATG 2 cut(s) 304, 405
FaiI YATR 6 cut(s) 213, 302, 330, 403, 440, 445
FaqI GGGAC 2 cut(s) 105, 155
FatI CATG 2 cut(s) 300, 401
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 9 cut(s) 18, 55, 252, 255, 267, 289, 292, 295, 298
FokI GGATG 2 cut(s) 99, 405
FriOI GRGCYC 1 cut(s) 340
Fsp4HI GCNGC 9 cut(s) 18, 55, 252, 255, 267, 289, 292, 295, 298
FspBI CTAG 1 cut(s) 216
GluI GCNGC 9 cut(s) 18, 55, 252, 255, 267, 289, 292, 295, 298
GsaI CCCAGC 1 cut(s) 109
GsuI CTGGAG 1 cut(s) 279
HaeIII GGCC 3 cut(s) 237, 377, 407
HapII CCGG 2 cut(s) 204, 415
HgaI GACGC 1 cut(s) 36
Hin1II CATG 2 cut(s) 304, 405
HinfI GANTC 1 cut(s) 25
HpaII CCGG 2 cut(s) 204, 415
HphI GGTGA 2 cut(s) 89, 205
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 6 cut(s) 11, 86, 130, 135, 184, 273
Hpy188III TCNNGA 1 cut(s) 222
Hpy8I GTNNAC 1 cut(s) 361
HpyCH4III ACNGT 2 cut(s) 146, 247
HpyCH4V TGCA 2 cut(s) 381, 401
HpyF10VI GCNNNNNNNGC 4 cut(s) 263, 275, 294, 297
HpyF3I CTNAG 1 cut(s) 183
Hsp92II CATG 2 cut(s) 304, 405
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 8 cut(s) 130, 135, 169, 199, 218, 224, 311, 411
Lsp1109I GCAGC 2 cut(s) 4, 241
MaeI CTAG 1 cut(s) 216
MalI GATC 8 cut(s) 132, 137, 171, 201, 220, 226, 313, 413
MboI GATC 8 cut(s) 130, 135, 169, 199, 218, 224, 311, 411
MboII GAAGA 1 cut(s) 34
MflI RGATCY 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 340
MlyI GAGTC 1 cut(s) 19
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 5 cut(s) 73, 107, 154, 178, 254
MspI CCGG 2 cut(s) 204, 415
MspR9I CCNGG 2 cut(s) 204, 205
MwoI GCNNNNNNNGC 4 cut(s) 263, 275, 294, 297
NciI CCSGG 2 cut(s) 204, 205
NdeII GATC 8 cut(s) 130, 135, 169, 199, 218, 224, 311, 411
NlaIII CATG 2 cut(s) 304, 405
PaeR7I CTCGAG 1 cut(s) 27
PkrI GCNGC 9 cut(s) 19, 56, 253, 256, 268, 290, 293, 296, 299
Ple19I CGATCG 1 cut(s) 138
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PspFI CCCAGC 1 cut(s) 105
PspPI GGNCC 3 cut(s) 7, 375, 405
PspXI VCTCGAGB 1 cut(s) 27
PsuI RGATCY 1 cut(s) 130
PvuI CGATCG 1 cut(s) 138
SatI GCNGC 9 cut(s) 18, 55, 252, 255, 267, 289, 292, 295, 298
Sau3AI GATC 8 cut(s) 130, 135, 169, 199, 218, 224, 311, 411
Sau96I GGNCC 3 cut(s) 7, 375, 405
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 2 cut(s) 204, 205
SduI GDGCHC 1 cut(s) 340
SetI ASST 2 cut(s) 34, 84
SfcI CTRYAG 1 cut(s) 443
Sfr274I CTCGAG 1 cut(s) 27
SinI GGWCC 1 cut(s) 7
SlaI CTCGAG 1 cut(s) 27
SmaI CCCGGG 1 cut(s) 205
SmlI CTYRAG 1 cut(s) 27
SmoI CTYRAG 1 cut(s) 27
SsiI CCGC 7 cut(s) 54, 251, 266, 288, 291, 294, 297
SspMI CTAG 1 cut(s) 216
StyD4I CCNGG 2 cut(s) 202, 203
StyI CCWWGG 1 cut(s) 238
TaaI ACNGT 2 cut(s) 146, 247
TaqI TCGA 2 cut(s) 28, 112
TauI GCSGC 7 cut(s) 57, 254, 269, 291, 294, 297, 300
TseI GCWGC 2 cut(s) 17, 254
TspMI CCCGGG 1 cut(s) 203
VpaK11BI GGWCC 1 cut(s) 7
XhoI CTCGAG 1 cut(s) 27
XmaI CCCGGG 1 cut(s) 203
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.