RchiOBHm_Chr4g0409631

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000467
Physical Location & Seq
Reverse (-)
33241594 .. 33242493
900 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38061

Sequence Viewer

Length: 900 bp
ATGTGGATTTATTTTCCTTGTCTTGAAAAATTGGAGATAGAGATGTGCAAAGGAATGTATGATCTCAAAATTTGCTGTCCGAACCTAAAAGATATACGAGTTTTCGGAATGAGTTTAAAGAGTATAGACATCTCCGGAATGAGACTAGAGGATGTAAGAGTCTCGTTTTGTTTTGTAAATTGCATCGATGGAAGTGGGGTTGAAATTTTCGCCCCGAATCTAAAATCCTTTGCTTGGGTGGGTAATGGCATTACTGACAAGTCTTCGATCCAGAGCCTTCCTGTGCTTAAAAGGTCTGAATTTCTTTGGCCCCACATTACAACGAAGAAGATTTCTAATAACAGTGTTATCGATCTTTTTTCGTCTTCATCCCAAGTTGAAGAACTTACAATAGCTTTTGACTTCCTCCAGATTCTATCAGAAATTTATTTTGAATTAGGTGGTCTGCCATTCTCATTCATGAAACTTAAGACCTTGGATATTTATCTCGATGAAAGATATTTCCCGGCCCGAGGTATAGCATGCCTATTCAAGAGTCCTGTAGTCCACAGACTGAGGATTCATCTTTTTGTGGACTCTTATGAAGAAAATTATGATGAGTGGACCGACTTGGATTACGCCAACTGCACTGAAAAGCAATACTGCGAGACTCGAGGTCAATATTTGAGCCCCTTTCTTAGTCACCTAAAGGTGGTCGACATTAACCTTGGCACCATGATCCCTGAGAATGCAGTAACTTTTGCAAAATTTTTCCTTAAATATGTTGGAGGCTTGCAAAAGGTGAATCTTAGATATTTTCAATGTAATCTACCTCCCAATTTGCTGAAAGATATCATTGCTTTAATGGAGGGTCTCCCCCGGGCATCTGCAGATGTTGAAATCTCAATTTCTTGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

299

Amino Acids

34.31

Weight (kDa)

5.37

Isoelectric Point (pI)

43.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 710
AccI GTMKAC 1 cut(s) 696
AccIII TCCGGA 1 cut(s) 134
AclWI GGATC 2 cut(s) 262, 712
AcsI RAATTY 5 cut(s) 69, 204, 299, 423, 746
AfiI CCNNNNNNNGG 3 cut(s) 234, 512, 691
AflII CTTAAG 1 cut(s) 467
AgsI TTSAA 7 cut(s) 26, 203, 380, 434, 532, 800, 878
AhdI GACNNNNNGTC 1 cut(s) 654
AluBI AGCT 1 cut(s) 395
AluI AGCT 1 cut(s) 395
Alw26I GTCTC 4 cut(s) 136, 166, 641, 857
AlwI GGATC 2 cut(s) 262, 712
Ama87I CYCGRG 3 cut(s) 510, 651, 858
Aor13HI TCCGGA 1 cut(s) 134
AoxI GGCC 2 cut(s) 308, 507
ApoI RAATTY 5 cut(s) 69, 204, 299, 423, 746
AspS9I GGNCC 3 cut(s) 309, 508, 603
AsuC2I CCSGG 3 cut(s) 506, 859, 860
AsuHPI GGTGA 2 cut(s) 674, 793
AvaI CYCGRG 3 cut(s) 510, 651, 858
AvaII GGWCC 1 cut(s) 603
BanI GGYRCC 1 cut(s) 710
BanII GRGCYC 1 cut(s) 671
BbsI GAAGAC 2 cut(s) 255, 357
BccI CCATC 1 cut(s) 182
BcnI CCSGG 3 cut(s) 506, 859, 860
BcoDI GTCTC 4 cut(s) 136, 166, 641, 857
BfaI CTAG 1 cut(s) 146
BfmI CTRYAG 2 cut(s) 540, 867
BfrI CTTAAG 1 cut(s) 467
Bme1390I CCNGG 3 cut(s) 506, 859, 860
Bme18I GGWCC 1 cut(s) 603
BmeRI GACNNNNNGTC 1 cut(s) 654
BmeT110I CYCGRG 3 cut(s) 510, 651, 858
BmgT120I GGNCC 3 cut(s) 309, 508, 603
BmiI GGNNCC 2 cut(s) 311, 712
BmrFI CCNGG 3 cut(s) 506, 859, 860
BmsI GCATC 2 cut(s) 192, 872
BpiI GAAGAC 2 cut(s) 255, 357
BpmI CTGGAG 1 cut(s) 392
BpuMI CCSGG 3 cut(s) 506, 859, 860
Bsa29I ATCGAT 2 cut(s) 186, 351
BsaBI GATNNNNATC 1 cut(s) 483
BsaI GGTCTC 1 cut(s) 857
BsaJI CCNNGG 5 cut(s) 474, 511, 706, 857, 858
BsaWI WCCGGW 1 cut(s) 134
Bsc4I CCNNNNNNNGG 3 cut(s) 234, 512, 691
Bse3DI GCAATG 1 cut(s) 834
Bse8I GATNNNNATC 1 cut(s) 483
BseAI TCCGGA 1 cut(s) 134
BseCI ATCGAT 2 cut(s) 186, 351
BseDI CCNNGG 5 cut(s) 474, 511, 706, 857, 858
BseGI GGATG 2 cut(s) 157, 368
BseJI GATNNNNATC 1 cut(s) 483
BseLI CCNNNNNNNGG 3 cut(s) 234, 512, 691
BseMI GCAATG 1 cut(s) 834
BseMII CTCAG 2 cut(s) 545, 714
BsgI GTGCAG 1 cut(s) 610
BshFI GGCC 2 cut(s) 310, 509
BshNI GGYRCC 1 cut(s) 710
BshVI ATCGAT 2 cut(s) 186, 351
BsiHKCI CYCGRG 3 cut(s) 510, 651, 858
BsiSI CCGG 3 cut(s) 135, 506, 859
BslI CCNNNNNNNGG 3 cut(s) 234, 512, 691
BsmAI GTCTC 4 cut(s) 136, 166, 641, 857
BsmI GAATGC 1 cut(s) 733
BsnI GGCC 2 cut(s) 310, 509
Bso31I GGTCTC 1 cut(s) 857
BsoBI CYCGRG 3 cut(s) 510, 651, 858
Bsp1286I GDGCHC 1 cut(s) 671
Bsp13I TCCGGA 1 cut(s) 134
Bsp143I GATC 4 cut(s) 61, 267, 352, 717
BspANI GGCC 2 cut(s) 310, 509
BspCNI CTCAG 2 cut(s) 546, 715
BspDI ATCGAT 2 cut(s) 186, 351
BspEI TCCGGA 1 cut(s) 134
BspHI TCATGA 1 cut(s) 459
BspLI GGNNCC 2 cut(s) 311, 712
BspMAI CTGCAG 1 cut(s) 871
BspPI GGATC 2 cut(s) 262, 712
BspT107I GGYRCC 1 cut(s) 710
BspTI CTTAAG 1 cut(s) 467
BspTNI GGTCTC 1 cut(s) 857
BsrDI GCAATG 1 cut(s) 834
BssECI CCNNGG 5 cut(s) 474, 511, 706, 857, 858
BssMI GATC 4 cut(s) 61, 267, 352, 717
BssT1I CCWWGG 2 cut(s) 474, 706
Bst4CI ACNGT 1 cut(s) 344
BstAFI CTTAAG 1 cut(s) 467
BstC8I GCNNGC 2 cut(s) 523, 773
BstDEI CTNAG 4 cut(s) 554, 677, 723, 788
BstF5I GGATG 2 cut(s) 157, 368
BstKTI GATC 4 cut(s) 64, 270, 355, 720
BstMAI GTCTC 4 cut(s) 136, 166, 641, 857
BstMBI GATC 4 cut(s) 61, 267, 352, 717
BstNSI RCATGY 1 cut(s) 525
BstSCI CCNGG 3 cut(s) 504, 857, 858
BstSFI CTRYAG 2 cut(s) 540, 867
BstV2I GAAGAC 2 cut(s) 255, 357
Bsu15I ATCGAT 2 cut(s) 186, 351
BsuRI GGCC 2 cut(s) 310, 509
BsuTUI ATCGAT 2 cut(s) 186, 351
BtsCI GGATG 2 cut(s) 157, 368
BtsIMutI CAGTG 2 cut(s) 349, 627
Cac8I GCNNGC 2 cut(s) 523, 773
CciI TCATGA 1 cut(s) 459
Cfr13I GGNCC 3 cut(s) 309, 508, 603
Cfr9I CCCGGG 1 cut(s) 858
ClaI ATCGAT 2 cut(s) 186, 351
CviAII CATG 3 cut(s) 460, 522, 715
CviJI RGCY 6 cut(s) 276, 310, 395, 509, 669, 771
CviKI_1 RGCY 6 cut(s) 276, 310, 395, 509, 669, 771
DdeI CTNAG 4 cut(s) 554, 677, 723, 788
DpnI GATC 4 cut(s) 63, 269, 354, 719
DpnII GATC 4 cut(s) 61, 267, 352, 717
DraI TTTAAA 1 cut(s) 117
DriI GACNNNNNGTC 1 cut(s) 654
Eam1105I GACNNNNNGTC 1 cut(s) 654
Eco130I CCWWGG 2 cut(s) 474, 706
Eco24I GRGCYC 1 cut(s) 671
Eco31I GGTCTC 1 cut(s) 857
Eco32I GATATC 1 cut(s) 832
Eco47I GGWCC 1 cut(s) 603
Eco88I CYCGRG 3 cut(s) 510, 651, 858
EcoRV GATATC 1 cut(s) 832
EcoT14I CCWWGG 2 cut(s) 474, 706
EcoT38I GRGCYC 1 cut(s) 671
ErhI CCWWGG 2 cut(s) 474, 706
FaeI CATG 3 cut(s) 463, 525, 718
FatI CATG 3 cut(s) 459, 521, 714
FblI GTMKAC 1 cut(s) 696
FokI GGATG 2 cut(s) 164, 355
FriOI GRGCYC 1 cut(s) 671
FspBI CTAG 1 cut(s) 146
GsuI CTGGAG 1 cut(s) 392
HaeIII GGCC 2 cut(s) 310, 509
HapII CCGG 3 cut(s) 135, 506, 859
Hin1II CATG 3 cut(s) 463, 525, 718
HincII GTYRAC 1 cut(s) 697
HindII GTYRAC 1 cut(s) 697
HinfI GANTC 8 cut(s) 159, 217, 412, 535, 559, 575, 649, 784
HpaII CCGG 3 cut(s) 135, 506, 859
HphI GGTGA 2 cut(s) 674, 793
Hpy166II GTNNAC 4 cut(s) 547, 574, 603, 697
Hpy188I TCNGA 4 cut(s) 81, 107, 298, 421
Hpy188III TCNNGA 7 cut(s) 23, 135, 271, 409, 460, 488, 532
Hpy8I GTNNAC 4 cut(s) 547, 574, 603, 697
HpyAV CCTTC 1 cut(s) 287
HpyCH4III ACNGT 1 cut(s) 344
HpyCH4V TGCA 7 cut(s) 48, 183, 627, 731, 743, 775, 869
HpyF3I CTNAG 4 cut(s) 554, 677, 723, 788
Hsp92II CATG 3 cut(s) 463, 525, 718
Kpn2I TCCGGA 1 cut(s) 134
Kzo9I GATC 4 cut(s) 61, 267, 352, 717
LpnPI CCDG 8 cut(s) 148, 284, 294, 422, 519, 552, 735, 872
LweI GCATC 2 cut(s) 192, 872
MaeI CTAG 1 cut(s) 146
MaeIII GTNAC 2 cut(s) 680, 733
MalI GATC 4 cut(s) 63, 269, 354, 719
MboI GATC 4 cut(s) 61, 267, 352, 717
MboII GAAGA 6 cut(s) 255, 337, 340, 357, 392, 596
MhlI GDGCHC 1 cut(s) 671
MlyI GAGTC 4 cut(s) 168, 544, 569, 643
MmeI TCCRAC 1 cut(s) 745
MnlI CCTC 8 cut(s) 142, 416, 506, 549, 647, 761, 822, 841
MroI TCCGGA 1 cut(s) 134
MseI TTAA 6 cut(s) 116, 288, 468, 702, 756, 842
MspCI CTTAAG 1 cut(s) 467
MspI CCGG 3 cut(s) 135, 506, 859
MspR9I CCNGG 3 cut(s) 506, 859, 860
Mva1269I GAATGC 1 cut(s) 733
NciI CCSGG 3 cut(s) 506, 859, 860
NdeII GATC 4 cut(s) 61, 267, 352, 717
NlaIII CATG 3 cut(s) 463, 525, 718
NlaIV GGNNCC 2 cut(s) 311, 712
NmuCI GTSAC 1 cut(s) 680
NspI RCATGY 1 cut(s) 525
PaeI GCATGC 1 cut(s) 525
PaeR7I CTCGAG 1 cut(s) 651
PagI TCATGA 1 cut(s) 459
PctI GAATGC 1 cut(s) 733
PfeI GAWTC 4 cut(s) 217, 412, 559, 784
PleI GAGTC 4 cut(s) 167, 543, 569, 643
PpsI GAGTC 4 cut(s) 167, 543, 569, 643
PspN4I GGNNCC 2 cut(s) 311, 712
PspPI GGNCC 3 cut(s) 309, 508, 603
PspXI VCTCGAGB 1 cut(s) 651
PstI CTGCAG 1 cut(s) 871
SalI GTCGAC 1 cut(s) 695
SaqAI TTAA 6 cut(s) 116, 288, 468, 702, 756, 842
Sau3AI GATC 4 cut(s) 61, 267, 352, 717
Sau96I GGNCC 3 cut(s) 309, 508, 603
SchI GAGTC 4 cut(s) 168, 544, 569, 643
ScrFI CCNGG 3 cut(s) 506, 859, 860
SduI GDGCHC 1 cut(s) 671
SfaNI GCATC 2 cut(s) 192, 872
SfcI CTRYAG 2 cut(s) 540, 867
Sfr274I CTCGAG 1 cut(s) 651
SinI GGWCC 1 cut(s) 603
SlaI CTCGAG 1 cut(s) 651
SmaI CCCGGG 1 cut(s) 860
SmlI CTYRAG 2 cut(s) 467, 651
SmoI CTYRAG 2 cut(s) 467, 651
SphI GCATGC 1 cut(s) 525
SspI AATATT 1 cut(s) 662
SspMI CTAG 1 cut(s) 146
StyD4I CCNGG 3 cut(s) 504, 857, 858
StyI CCWWGG 2 cut(s) 474, 706
TaaI ACNGT 1 cut(s) 344
TaqI TCGA 6 cut(s) 186, 266, 351, 489, 652, 696
TaqII GACCGA 1 cut(s) 620
TfiI GAWTC 4 cut(s) 217, 412, 559, 784
Tru1I TTAA 6 cut(s) 116, 288, 468, 702, 756, 842
Tru9I TTAA 6 cut(s) 116, 288, 468, 702, 756, 842
TscAI CASTG 2 cut(s) 349, 634
TseFI GTSAC 1 cut(s) 680
Tsp45I GTSAC 1 cut(s) 680
TspDTI ATGAA 6 cut(s) 357, 448, 476, 507, 551, 597
TspMI CCCGGG 1 cut(s) 858
TspRI CASTG 2 cut(s) 349, 634
Vha464I CTTAAG 1 cut(s) 467
VpaK11BI GGWCC 1 cut(s) 603
XapI RAATTY 5 cut(s) 69, 204, 299, 423, 746
XceI RCATGY 1 cut(s) 525
XhoI CTCGAG 1 cut(s) 651
XmaI CCCGGG 1 cut(s) 858
XmiI GTMKAC 1 cut(s) 696
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.