RchiOBHm_Chr2g0086171

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000467
Physical Location & Seq
Reverse (-)
1326595 .. 1327287
693 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46170

Sequence Viewer

Length: 693 bp
ATGGGAAACATAGCATCTAAGTGTTTCACCGTCAAAAAGAAGCAGAGCAGTGACACAATAAGTGATCTTCCTGATGATATATTGTACCACATTCTCTCTTTTTTATCCATCAAATCCATTGCACAAACCAGTGTTTTAGCTAGAAGATGGGGTTATATATGGGCTTCAATTCCTGTCCTTGACTTCTCTAAGGCTTGTCCTCAGATTCTCATTCCCGAGGCCGAGGTAGTTAAGCAAACACTTGATCATGAGCATTCTAAAGCAATGAAATTCATAACCTCATTATTATCCCGTCGCCACGAAAACTATAACATCAAGGTTTTTAGGGTTTATGGCCATCTGAGTTTTTCCCGTTTGAATAATCTCATCCGTCTGCTGGTGAACCATAGGGTAGTAGAACCTGAGCTCTACGTGTTGTTAAGTGATAGTTTCGAGTTTCCTGAGTGTCTATTTGAGTGCGATTCATTGAGGAGTCTCACATTGCAAGTCCATAGTCCATATTATTGGAAAGTAAGAAATCTATCAAGACCATACTTTGGGCTTGCGTGTCCATGTGTTTTGGCTAAAAGAGGTCTCCGATTGGTTCACACTTTGTCTCTAGCTAATATGGATTTCTCGAAAAGTGCCGATTTGGGTAATGTGGATTTGTTTTATGGTTCTAATCATTCCCTTGTCTTTAGAAAATGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

230

Amino Acids

26.39

Weight (kDa)

9.15

Isoelectric Point (pI)

54.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 20 - 58 6e-08 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 536
AcoI YGGCCR 1 cut(s) 334
AcsI RAATTY 1 cut(s) 269
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 2 cut(s) 376, 536
AflIII ACRYGT 1 cut(s) 411
AgsI TTSAA 2 cut(s) 168, 358
AluBI AGCT 3 cut(s) 140, 406, 602
AluI AGCT 3 cut(s) 140, 406, 602
Alw21I GWGCWC 1 cut(s) 408
Alw26I GTCTC 3 cut(s) 479, 578, 600
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 2 cut(s) 219, 334
ApoI RAATTY 1 cut(s) 269
Asp700I GAANNNNTTC 1 cut(s) 685
AsuHPI GGTGA 2 cut(s) 19, 391
AvaI CYCGRG 1 cut(s) 215
BalI TGGCCA 1 cut(s) 336
BanII GRGCYC 1 cut(s) 408
Bbv12I GWGCWC 1 cut(s) 408
BccI CCATC 3 cut(s) 116, 141, 345
BclI TGATCA 1 cut(s) 244
BcoDI GTCTC 3 cut(s) 479, 578, 600
BfaI CTAG 2 cut(s) 141, 599
BmeT110I CYCGRG 1 cut(s) 215
BmsI GCATC 1 cut(s) 23
Bpu10I CCTNAGC 1 cut(s) 402
BsaAI YACGTR 1 cut(s) 412
BsaI GGTCTC 1 cut(s) 578
BsaJI CCNNGG 2 cut(s) 216, 222
Bsc4I CCNNNNNNNGG 2 cut(s) 376, 536
Bse1I ACTGG 1 cut(s) 129
Bse3DI GCAATG 3 cut(s) 117, 270, 479
BseDI CCNNGG 2 cut(s) 216, 222
BseGI GGATG 1 cut(s) 366
BseLI CCNNNNNNNGG 2 cut(s) 376, 536
BseMI GCAATG 3 cut(s) 117, 270, 479
BseMII CTCAG 4 cut(s) 215, 332, 393, 432
BseNI ACTGG 1 cut(s) 129
BseRI GAGGAG 1 cut(s) 484
BshFI GGCC 2 cut(s) 221, 336
BsiHKAI GWGCWC 1 cut(s) 408
BsiHKCI CYCGRG 1 cut(s) 215
BslI CCNNNNNNNGG 2 cut(s) 376, 536
BsmAI GTCTC 3 cut(s) 479, 578, 600
BsmI GAATGC 1 cut(s) 253
BsnI GGCC 2 cut(s) 221, 336
Bso31I GGTCTC 1 cut(s) 578
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 408
Bsp143I GATC 2 cut(s) 64, 244
BspANI GGCC 2 cut(s) 221, 336
BspCNI CTCAG 4 cut(s) 214, 333, 394, 433
BspHI TCATGA 1 cut(s) 247
BspTNI GGTCTC 1 cut(s) 578
BsrDI GCAATG 3 cut(s) 117, 270, 479
BsrI ACTGG 1 cut(s) 129
BssECI CCNNGG 2 cut(s) 216, 222
BssMI GATC 2 cut(s) 64, 244
Bst4CI ACNGT 1 cut(s) 31
BstBAI YACGTR 1 cut(s) 412
BstC8I GCNNGC 1 cut(s) 543
BstDEI CTNAG 6 cut(s) 18, 189, 201, 341, 402, 441
BstF5I GGATG 1 cut(s) 366
BstKTI GATC 2 cut(s) 67, 247
BstMAI GTCTC 3 cut(s) 479, 578, 600
BstMBI GATC 2 cut(s) 64, 244
BstXI CCANNNNNNTGG 1 cut(s) 504
BsuRI GGCC 2 cut(s) 221, 336
BtsCI GGATG 1 cut(s) 366
BtsI GCAGTG 1 cut(s) 55
BtsIMutI CAGTG 2 cut(s) 55, 136
Cac8I GCNNGC 1 cut(s) 543
CciI TCATGA 1 cut(s) 247
Csp6I GTAC 1 cut(s) 85
CviAII CATG 2 cut(s) 248, 552
CviJI RGCY 9 cut(s) 140, 164, 194, 221, 336, 406, 541, 563, 602
CviKI_1 RGCY 9 cut(s) 140, 164, 194, 221, 336, 406, 541, 563, 602
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 6 cut(s) 18, 189, 201, 341, 402, 441
DpnI GATC 2 cut(s) 66, 246
DpnII GATC 2 cut(s) 64, 244
EaeI YGGCCR 1 cut(s) 334
Ecl136II GAGCTC 1 cut(s) 406
Eco24I GRGCYC 1 cut(s) 408
Eco31I GGTCTC 1 cut(s) 578
Eco53kI GAGCTC 1 cut(s) 406
Eco88I CYCGRG 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 406
EcoT38I GRGCYC 1 cut(s) 408
FaeI CATG 2 cut(s) 251, 555
FatI CATG 2 cut(s) 247, 551
FbaI TGATCA 1 cut(s) 244
FokI GGATG 1 cut(s) 353
FriOI GRGCYC 1 cut(s) 408
FspBI CTAG 2 cut(s) 141, 599
HaeIII GGCC 2 cut(s) 221, 336
Hin1II CATG 2 cut(s) 251, 555
HinfI GANTC 3 cut(s) 205, 461, 472
HphI GGTGA 2 cut(s) 19, 391
Hpy166II GTNNAC 2 cut(s) 382, 586
Hpy188I TCNGA 3 cut(s) 204, 342, 578
Hpy188III TCNNGA 6 cut(s) 71, 215, 248, 440, 525, 616
Hpy8I GTNNAC 2 cut(s) 382, 586
Hpy99I CGWCG 1 cut(s) 297
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 2 cut(s) 122, 484
HpyF3I CTNAG 6 cut(s) 18, 189, 201, 341, 402, 441
HpySE526I ACGT 1 cut(s) 411
Hsp92II CATG 2 cut(s) 251, 555
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 2 cut(s) 64, 244
LpnPI CCDG 6 cut(s) 84, 142, 186, 362, 414, 453
LweI GCATC 1 cut(s) 23
MaeI CTAG 2 cut(s) 141, 599
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 1 cut(s) 50
MalI GATC 2 cut(s) 66, 246
MboI GATC 2 cut(s) 64, 244
MboII GAAGA 2 cut(s) 59, 156
MhlI GDGCHC 1 cut(s) 408
MlsI TGGCCA 1 cut(s) 336
MluCI AATT 2 cut(s) 168, 269
MluNI TGGCCA 1 cut(s) 336
MlyI GAGTC 1 cut(s) 481
MnlI CCTC 6 cut(s) 210, 211, 217, 289, 462, 563
Mox20I TGGCCA 1 cut(s) 336
MroXI GAANNNNTTC 1 cut(s) 685
MscI TGGCCA 1 cut(s) 336
MseI TTAA 3 cut(s) 231, 419, 691
MslI CAYNNNNRTG 1 cut(s) 19
Msp20I TGGCCA 1 cut(s) 336
Mva1269I GAATGC 1 cut(s) 253
NdeII GATC 2 cut(s) 64, 244
NlaIII CATG 2 cut(s) 251, 555
NmeAIII GCCGAG 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 50
PagI TCATGA 1 cut(s) 247
PctI GAATGC 1 cut(s) 253
PdmI GAANNNNTTC 1 cut(s) 685
PfeI GAWTC 2 cut(s) 205, 461
PflMI CCANNNNNTGG 1 cut(s) 536
PleI GAGTC 1 cut(s) 480
PpsI GAGTC 1 cut(s) 480
Ppu21I YACGTR 1 cut(s) 412
Psp124BI GAGCTC 1 cut(s) 408
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
RseI CAYNNNNRTG 1 cut(s) 19
SacI GAGCTC 1 cut(s) 408
SaqAI TTAA 3 cut(s) 231, 419, 691
Sau3AI GATC 2 cut(s) 64, 244
SchI GAGTC 1 cut(s) 481
SduI GDGCHC 1 cut(s) 408
SetI ASST 9 cut(s) 142, 228, 281, 321, 403, 408, 414, 574, 604
SfaNI GCATC 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 19
Sse9I AATT 2 cut(s) 168, 269
SspMI CTAG 2 cut(s) 141, 599
SstI GAGCTC 1 cut(s) 408
TaaI ACNGT 1 cut(s) 31
TaiI ACGT 1 cut(s) 414
TaqI TCGA 2 cut(s) 432, 617
TasI AATT 2 cut(s) 168, 269
TfiI GAWTC 2 cut(s) 205, 461
Tru1I TTAA 3 cut(s) 231, 419, 691
Tru9I TTAA 3 cut(s) 231, 419, 691
TscAI CASTG 2 cut(s) 55, 136
TseFI GTSAC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 3 cut(s) 262, 281, 453
TspGWI ACGGA 1 cut(s) 359
TspRI CASTG 2 cut(s) 55, 136
Van91I CCANNNNNTGG 1 cut(s) 536
XapI RAATTY 1 cut(s) 269
XmnI GAANNNNTTC 1 cut(s) 685
XspI CTAG 2 cut(s) 141, 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.