RLG00000033937

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000467
Physical Location & Seq
Reverse (-)
34420964 .. 34421809
846 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033937

Sequence Viewer

Length: 846 bp
ATGACTGCTCTCAAAGTTTGCTGTCCGAACCTAAAAGTTGTATACGTTTTCAGAATGGATCTATATAGCATGGACATCTCTGGAATGAGACTGGAGAAGTTGTCTTGTGCTGCAAATTGCATCGATGGTTGGGTCAACATTTTTGCCCCGAATCTACAAGACCTGTATTGGGGCAATGCAATTACTGAGAAGTGTTACATCCAGAGCTTTCCTACGCCCAAAAGATCTTCCCTGAGCTATTCGTTTCGGTTAGGCATTACAACGACAAAGATTTTTCATAAAAGTGTTATCAATCTTCTTTGCCATTCATCCCAAGCTGAGATACTTGGTATATTTGATGACTACCTCGAGATTCTATCAGACATTTATACTGAATTTGGTGGTGTACCTTTCTCATTTGGCAAACTTGAAACCTTGAGAATTGGGTACACAATGAAGCAAAGATATATCCCGGGTATAGCATGCCTGTTGAAGAGCTCTCCCTTAGTTCACACCCTCTACTTTGAATTTTACTCTTTCGAAGAAAATGGTAAGTGGAATAACATTATGTTGGATAATGGCAATTGCACTCAAGAGCAATACTGGGAAACTCAGGCTCAACATTTGATCCCCTTTCTTAGTCACCTAAAGGTGGTCGACATTGGCCTTGGTAACATGATCTCTGAGAGTGCAATCACTTTTGCAACGTTTTTGCTTAAATATGGAAGAGGGCTGCAAAAAATGATTATTAGCTTTTGGAGGAGCGGAAGTTCACTTTCTCCGAATTCGCTAAGTGGTACCATTGATTTATTAAAGGGTTTCCCCCGGGCATCTGCAGATGTTGAGTTCTCAAGATTCTACTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

282

Amino Acids

32.0

Weight (kDa)

7.54

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 776
AccB1I GGYRCC 1 cut(s) 776
AccBSI CCGCTC 1 cut(s) 744
AccI GTMKAC 2 cut(s) 42, 636
AciI CCGC 1 cut(s) 744
AclI AACGTT 1 cut(s) 686
AclWI GGATC 2 cut(s) 66, 601
AcsI RAATTY 3 cut(s) 374, 506, 763
AfaI GTAC 3 cut(s) 387, 428, 778
AfiI CCNNNNNNNGG 2 cut(s) 169, 631
AgsI TTSAA 3 cut(s) 410, 472, 506
AloI GAACNNNNNNTCC 2 cut(s) 733, 765
AluBI AGCT 5 cut(s) 207, 237, 317, 477, 732
AluI AGCT 5 cut(s) 207, 237, 317, 477, 732
Alw21I GWGCWC 1 cut(s) 479
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 2 cut(s) 66, 601
Ama87I CYCGRG 3 cut(s) 347, 451, 804
AoxI GGCC 1 cut(s) 643
ApeKI GCWGC 2 cut(s) 110, 712
ApoI RAATTY 3 cut(s) 374, 506, 763
Asp718I GGTACC 1 cut(s) 776
AsuC2I CCSGG 4 cut(s) 452, 453, 805, 806
AsuHPI GGTGA 1 cut(s) 614
AsuII TTCGAA 1 cut(s) 519
AvaI CYCGRG 3 cut(s) 347, 451, 804
BanI GGYRCC 1 cut(s) 776
BanII GRGCYC 1 cut(s) 479
Bbv12I GWGCWC 1 cut(s) 479
BbvI GCAGC 2 cut(s) 97, 699
BccI CCATC 1 cut(s) 119
BcnI CCSGG 4 cut(s) 452, 453, 805, 806
BcoDI GTCTC 1 cut(s) 82
BfmI CTRYAG 1 cut(s) 813
BglII AGATCT 1 cut(s) 224
BisI GCNGC 2 cut(s) 111, 713
BlsI GCNGC 2 cut(s) 112, 714
Bme1390I CCNGG 4 cut(s) 452, 453, 805, 806
BmeT110I CYCGRG 3 cut(s) 347, 451, 804
BmiI GGNNCC 1 cut(s) 778
BmrFI CCNGG 4 cut(s) 452, 453, 805, 806
BmrI ACTGGG 1 cut(s) 592
BmsI GCATC 2 cut(s) 129, 818
BmuI ACTGGG 1 cut(s) 592
BpmI CTGGAG 1 cut(s) 113
Bpu10I CCTNAGC 1 cut(s) 233
Bpu14I TTCGAA 1 cut(s) 519
BpuEI CTTGAG 3 cut(s) 436, 555, 814
BpuMI CCSGG 4 cut(s) 452, 453, 805, 806
Bsa29I ATCGAT 1 cut(s) 123
BsaJI CCNNGG 4 cut(s) 451, 646, 803, 804
BsaXI ACNNNNNCTCC 4 cut(s) 86, 116, 733, 763
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 631
Bse1I ACTGG 2 cut(s) 96, 587
Bse3DI GCAATG 1 cut(s) 181
BseCI ATCGAT 1 cut(s) 123
BseDI CCNNGG 4 cut(s) 451, 646, 803, 804
BseGI GGATG 2 cut(s) 198, 308
BseLI CCNNNNNNNGG 2 cut(s) 169, 631
BseMI GCAATG 1 cut(s) 181
BseMII CTCAG 5 cut(s) 177, 224, 309, 605, 654
BseNI ACTGG 2 cut(s) 96, 587
BseRI GAGGAG 1 cut(s) 754
BseXI GCAGC 2 cut(s) 97, 699
BshFI GGCC 1 cut(s) 645
BshNI GGYRCC 1 cut(s) 776
BshVI ATCGAT 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 479
BsiHKCI CYCGRG 3 cut(s) 347, 451, 804
BsiSI CCGG 2 cut(s) 452, 805
BslI CCNNNNNNNGG 2 cut(s) 169, 631
BsmAI GTCTC 1 cut(s) 82
BsnI GGCC 1 cut(s) 645
BsoBI CYCGRG 3 cut(s) 347, 451, 804
Bsp119I TTCGAA 1 cut(s) 519
Bsp1286I GDGCHC 1 cut(s) 479
Bsp143I GATC 4 cut(s) 58, 224, 606, 657
BspACI CCGC 1 cut(s) 744
BspANI GGCC 1 cut(s) 645
BspCNI CTCAG 5 cut(s) 178, 225, 310, 604, 655
BspDI ATCGAT 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 778
BspMAI CTGCAG 1 cut(s) 817
BspPI GGATC 2 cut(s) 66, 601
BspQI GCTCTTC 1 cut(s) 467
BspT104I TTCGAA 1 cut(s) 519
BspT107I GGYRCC 1 cut(s) 776
BsrBI CCGCTC 1 cut(s) 744
BsrDI GCAATG 1 cut(s) 181
BsrI ACTGG 2 cut(s) 96, 587
BssECI CCNNGG 4 cut(s) 451, 646, 803, 804
BssMI GATC 4 cut(s) 58, 224, 606, 657
BssNAI GTATAC 1 cut(s) 43
BssT1I CCWWGG 1 cut(s) 646
Bst1107I GTATAC 1 cut(s) 43
Bst6I CTCTTC 2 cut(s) 467, 700
BstBI TTCGAA 1 cut(s) 519
BstC8I GCNNGC 1 cut(s) 463
BstDEI CTNAG 8 cut(s) 186, 233, 318, 484, 591, 617, 663, 770
BstF5I GGATG 2 cut(s) 198, 308
BstKTI GATC 4 cut(s) 61, 227, 609, 660
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 4 cut(s) 58, 224, 606, 657
BstNSI RCATGY 1 cut(s) 465
BstSCI CCNGG 4 cut(s) 450, 451, 803, 804
BstSFI CTRYAG 1 cut(s) 813
BstV1I GCAGC 2 cut(s) 97, 699
BstX2I RGATCY 2 cut(s) 58, 224
BstYI RGATCY 2 cut(s) 58, 224
BstZ17I GTATAC 1 cut(s) 43
Bsu15I ATCGAT 1 cut(s) 123
BsuRI GGCC 1 cut(s) 645
BsuTUI ATCGAT 1 cut(s) 123
BtsCI GGATG 2 cut(s) 198, 308
Cac8I GCNNGC 1 cut(s) 463
Cfr9I CCCGGG 2 cut(s) 451, 804
ClaI ATCGAT 1 cut(s) 123
Csp6I GTAC 3 cut(s) 386, 427, 777
CviAII CATG 3 cut(s) 70, 462, 655
CviJI RGCY 8 cut(s) 207, 237, 317, 477, 596, 645, 712, 732
CviKI_1 RGCY 8 cut(s) 207, 237, 317, 477, 596, 645, 712, 732
CviQI GTAC 3 cut(s) 386, 427, 777
DdeI CTNAG 8 cut(s) 186, 233, 318, 484, 591, 617, 663, 770
DpnI GATC 4 cut(s) 60, 226, 608, 659
DpnII GATC 4 cut(s) 58, 224, 606, 657
Eam1104I CTCTTC 2 cut(s) 467, 700
EarI CTCTTC 2 cut(s) 467, 700
Ecl136II GAGCTC 1 cut(s) 477
Eco130I CCWWGG 1 cut(s) 646
Eco24I GRGCYC 1 cut(s) 479
Eco53kI GAGCTC 1 cut(s) 477
Eco88I CYCGRG 3 cut(s) 347, 451, 804
EcoICRI GAGCTC 1 cut(s) 477
EcoRI GAATTC 1 cut(s) 763
EcoT14I CCWWGG 1 cut(s) 646
EcoT38I GRGCYC 1 cut(s) 479
ErhI CCWWGG 1 cut(s) 646
FaeI CATG 3 cut(s) 73, 465, 658
FatI CATG 3 cut(s) 69, 461, 654
FblI GTMKAC 2 cut(s) 42, 636
Fnu4HI GCNGC 2 cut(s) 111, 713
FokI GGATG 2 cut(s) 185, 295
FriOI GRGCYC 1 cut(s) 479
Fsp4HI GCNGC 2 cut(s) 111, 713
GluI GCNGC 2 cut(s) 111, 713
GsuI CTGGAG 1 cut(s) 113
HaeIII GGCC 1 cut(s) 645
HapII CCGG 2 cut(s) 452, 805
Hin1II CATG 3 cut(s) 73, 465, 658
HincII GTYRAC 2 cut(s) 136, 637
HindII GTYRAC 2 cut(s) 136, 637
HinfI GANTC 3 cut(s) 151, 352, 834
HpaII CCGG 2 cut(s) 452, 805
HphI GGTGA 1 cut(s) 614
Hpy166II GTNNAC 7 cut(s) 43, 136, 386, 429, 490, 637, 752
Hpy188I TCNGA 5 cut(s) 27, 53, 361, 664, 762
Hpy188III TCNNGA 5 cut(s) 81, 202, 349, 572, 831
Hpy8I GTNNAC 7 cut(s) 43, 136, 386, 429, 490, 637, 752
HpyCH4IV ACGT 2 cut(s) 45, 686
HpyCH4V TGCA 8 cut(s) 113, 120, 179, 567, 671, 683, 715, 815
HpyF3I CTNAG 8 cut(s) 186, 233, 318, 484, 591, 617, 663, 770
HpySE526I ACGT 2 cut(s) 45, 686
Hsp92II CATG 3 cut(s) 73, 465, 658
KpnI GGTACC 1 cut(s) 780
Kzo9I GATC 4 cut(s) 58, 224, 606, 657
LguI GCTCTTC 1 cut(s) 467
LmnI GCTCC 1 cut(s) 741
Lsp1109I GCAGC 2 cut(s) 97, 699
LweI GCATC 2 cut(s) 129, 818
MaeII ACGT 2 cut(s) 45, 686
MaeIII GTNAC 3 cut(s) 194, 620, 650
MalI GATC 4 cut(s) 60, 226, 608, 659
MbiI CCGCTC 1 cut(s) 744
MboI GATC 4 cut(s) 58, 224, 606, 657
MboII GAAGA 5 cut(s) 219, 287, 484, 533, 717
MfeI CAATTG 1 cut(s) 562
MflI RGATCY 2 cut(s) 58, 224
MhlI GDGCHC 1 cut(s) 479
MluCI AATT 7 cut(s) 115, 180, 374, 420, 506, 562, 763
MmeI TCCRAC 1 cut(s) 531
MnlI CCTC 4 cut(s) 356, 506, 701, 732
MseI TTAA 2 cut(s) 696, 791
MslI CAYNNNNRTG 1 cut(s) 282
MspI CCGG 2 cut(s) 452, 805
MspR9I CCNGG 4 cut(s) 452, 453, 805, 806
MunI CAATTG 1 cut(s) 562
NciI CCSGG 4 cut(s) 452, 453, 805, 806
NdeII GATC 4 cut(s) 58, 224, 606, 657
NlaIII CATG 3 cut(s) 73, 465, 658
NlaIV GGNNCC 1 cut(s) 778
NmuCI GTSAC 1 cut(s) 620
NspI RCATGY 1 cut(s) 465
NspV TTCGAA 1 cut(s) 519
PaeI GCATGC 1 cut(s) 465
PaeR7I CTCGAG 1 cut(s) 347
PciSI GCTCTTC 1 cut(s) 467
PfeI GAWTC 3 cut(s) 151, 352, 834
PkrI GCNGC 2 cut(s) 112, 714
Psp124BI GAGCTC 1 cut(s) 479
Psp1406I AACGTT 1 cut(s) 686
PspN4I GGNNCC 1 cut(s) 778
PstI CTGCAG 1 cut(s) 817
PsuI RGATCY 2 cut(s) 58, 224
RsaI GTAC 3 cut(s) 387, 428, 778
RsaNI GTAC 3 cut(s) 386, 427, 777
RseI CAYNNNNRTG 1 cut(s) 282
SacI GAGCTC 1 cut(s) 479
SalI GTCGAC 1 cut(s) 635
SapI GCTCTTC 1 cut(s) 467
SaqAI TTAA 2 cut(s) 696, 791
SatI GCNGC 2 cut(s) 111, 713
Sau3AI GATC 4 cut(s) 58, 224, 606, 657
ScrFI CCNGG 4 cut(s) 452, 453, 805, 806
SduI GDGCHC 1 cut(s) 479
SfaNI GCATC 2 cut(s) 129, 818
SfcI CTRYAG 1 cut(s) 813
Sfr274I CTCGAG 1 cut(s) 347
SfuI TTCGAA 1 cut(s) 519
SlaI CTCGAG 1 cut(s) 347
SmaI CCCGGG 2 cut(s) 453, 806
SmiMI CAYNNNNRTG 1 cut(s) 282
SmlI CTYRAG 4 cut(s) 347, 415, 570, 829
SmoI CTYRAG 4 cut(s) 347, 415, 570, 829
SphI GCATGC 1 cut(s) 465
Sse9I AATT 7 cut(s) 115, 180, 374, 420, 506, 562, 763
SsiI CCGC 1 cut(s) 744
SstI GAGCTC 1 cut(s) 479
StyD4I CCNGG 4 cut(s) 450, 451, 803, 804
StyI CCWWGG 1 cut(s) 646
TaiI ACGT 2 cut(s) 48, 689
TaqI TCGA 4 cut(s) 123, 348, 519, 636
TasI AATT 7 cut(s) 115, 180, 374, 420, 506, 562, 763
TfiI GAWTC 3 cut(s) 151, 352, 834
Tru1I TTAA 2 cut(s) 696, 791
Tru9I TTAA 2 cut(s) 696, 791
TseFI GTSAC 1 cut(s) 620
TseI GCWGC 2 cut(s) 110, 712
Tsp45I GTSAC 1 cut(s) 620
TspDTI ATGAA 3 cut(s) 266, 297, 449
TspMI CCCGGG 2 cut(s) 451, 804
XapI RAATTY 3 cut(s) 374, 506, 763
XceI RCATGY 1 cut(s) 465
XhoI CTCGAG 1 cut(s) 347
XmaI CCCGGG 2 cut(s) 451, 804
XmiI GTMKAC 2 cut(s) 42, 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.