Rmu_sc0000330.1_g000009

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000330.1
OG0000467
Physical Location & Seq
Forward (+)
50549 .. 50971
423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000330.1_g000009.1.cds

Sequence Viewer

Length: 423 bp
atgaaacttaagaccttggtaatttttctcggagaaagatatatcccggcctgggtatttaagagctctcctatagtccacaacctcaggattaatctttggatgtacacttacgaagaaaatgatgagtggaacgacttggatgacgccaactgcactgaagagcaatactgggagactccagctcgatatttgagcccctttcttagtcacctaaaggtggtcgacattaaccttggcaacatgatccctgagaatgcacagtttttccttaaatatggaagaggcttgcaaaaagtgattcttagatttcgtaggggaaaaagtactctacctcccaatttgctgaaggataccattgctttagtggagggtatcccccgggcatctgccgatgttaaaatctcaacttcttgctattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

140

Amino Acids

16.31

Weight (kDa)

7.74

Isoelectric Point (pI)

35.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 225
AclWI GGATC 1 cut(s) 241
AcuI CTGAAG 2 cut(s) 180, 368
AcyI GRCGYC 1 cut(s) 147
AfaI GTAC 2 cut(s) 107, 328
AfiI CCNNNNNNNGG 2 cut(s) 52, 220
AflII CTTAAG 1 cut(s) 8
AjnI CCWGG 1 cut(s) 50
AluBI AGCT 2 cut(s) 66, 185
AluI AGCT 2 cut(s) 66, 185
Alw21I GWGCWC 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 170
AlwI GGATC 1 cut(s) 241
Ama87I CYCGRG 1 cut(s) 381
AoxI GGCC 1 cut(s) 48
AseI ATTAAT 1 cut(s) 93
AsuC2I CCSGG 3 cut(s) 47, 382, 383
AsuHPI GGTGA 1 cut(s) 203
AvaI CYCGRG 1 cut(s) 381
AxyI CCTNAGG 1 cut(s) 86
BanII GRGCYC 2 cut(s) 68, 200
Bbv12I GWGCWC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 52
BciVI GTATCC 2 cut(s) 346, 386
BcnI CCSGG 3 cut(s) 47, 382, 383
BcoDI GTCTC 1 cut(s) 170
BfmI CTRYAG 1 cut(s) 72
BfrI CTTAAG 1 cut(s) 8
BfuI GTATCC 2 cut(s) 346, 386
BmcAI AGTACT 1 cut(s) 328
Bme1390I CCNGG 4 cut(s) 47, 52, 382, 383
BmeT110I CYCGRG 1 cut(s) 381
BmrFI CCNGG 4 cut(s) 47, 52, 382, 383
BmrI ACTGGG 1 cut(s) 181
BmsI GCATC 1 cut(s) 395
BmuI ACTGGG 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 165
BpuMI CCSGG 3 cut(s) 47, 382, 383
BsaHI GRCGYC 1 cut(s) 147
BsaJI CCNNGG 5 cut(s) 15, 51, 235, 380, 381
BsaXI ACNNNNNCTCC 2 cut(s) 319, 349
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 220
Bse1I ACTGG 1 cut(s) 176
Bse21I CCTNAGG 1 cut(s) 86
Bse3DI GCAATG 1 cut(s) 357
BseBI CCWGG 1 cut(s) 52
BseDI CCNNGG 5 cut(s) 15, 51, 235, 380, 381
BseGI GGATG 2 cut(s) 108, 148
BseLI CCNNNNNNNGG 2 cut(s) 52, 220
BseMI GCAATG 1 cut(s) 357
BseMII CTCAG 2 cut(s) 100, 243
BseNI ACTGG 1 cut(s) 176
BsgI GTGCAG 1 cut(s) 139
BshFI GGCC 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 68
BsiHKCI CYCGRG 1 cut(s) 381
BsiSI CCGG 2 cut(s) 47, 382
BslI CCNNNNNNNGG 2 cut(s) 52, 220
BsmAI GTCTC 1 cut(s) 170
BsmI GAATGC 1 cut(s) 262
BsnI GGCC 1 cut(s) 50
BsoBI CYCGRG 1 cut(s) 381
Bsp1286I GDGCHC 2 cut(s) 68, 200
Bsp1407I TGTACA 1 cut(s) 105
Bsp143I GATC 1 cut(s) 246
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 2 cut(s) 99, 244
BspPI GGATC 1 cut(s) 241
BspQI GCTCTTC 1 cut(s) 156
BspTI CTTAAG 1 cut(s) 8
BsrDI GCAATG 1 cut(s) 357
BsrGI TGTACA 1 cut(s) 105
BsrI ACTGG 1 cut(s) 176
BssECI CCNNGG 5 cut(s) 15, 51, 235, 380, 381
BssMI GATC 1 cut(s) 246
BssNI GRCGYC 1 cut(s) 147
BssT1I CCWWGG 2 cut(s) 15, 235
Bst2UI CCWGG 1 cut(s) 52
Bst4CI ACNGT 1 cut(s) 264
Bst6I CTCTTC 2 cut(s) 156, 277
BstACI GRCGYC 1 cut(s) 147
BstAFI CTTAAG 1 cut(s) 8
BstAUI TGTACA 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 290
BstDEI CTNAG 4 cut(s) 86, 206, 252, 305
BstF5I GGATG 2 cut(s) 108, 148
BstKTI GATC 1 cut(s) 249
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 1 cut(s) 246
BstNI CCWGG 1 cut(s) 52
BstSCI CCNGG 4 cut(s) 45, 50, 380, 381
BstSFI CTRYAG 1 cut(s) 72
Bsu36I CCTNAGG 1 cut(s) 86
BsuI GTATCC 2 cut(s) 346, 386
BsuRI GGCC 1 cut(s) 50
BtsCI GGATG 2 cut(s) 108, 148
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 290
Cfr9I CCCGGG 1 cut(s) 381
CseI GACGC 1 cut(s) 155
Csp6I GTAC 2 cut(s) 106, 327
CviAII CATG 1 cut(s) 244
CviJI RGCY 5 cut(s) 50, 66, 185, 198, 288
CviKI_1 RGCY 5 cut(s) 50, 66, 185, 198, 288
CviQI GTAC 2 cut(s) 106, 327
DdeI CTNAG 4 cut(s) 86, 206, 252, 305
DpnI GATC 1 cut(s) 248
DpnII GATC 1 cut(s) 246
Eam1104I CTCTTC 2 cut(s) 156, 277
EarI CTCTTC 2 cut(s) 156, 277
Ecl136II GAGCTC 1 cut(s) 66
Eco130I CCWWGG 2 cut(s) 15, 235
Eco24I GRGCYC 2 cut(s) 68, 200
Eco53kI GAGCTC 1 cut(s) 66
Eco57I CTGAAG 2 cut(s) 180, 368
Eco81I CCTNAGG 1 cut(s) 86
Eco88I CYCGRG 1 cut(s) 381
EcoICRI GAGCTC 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 50
EcoT14I CCWWGG 2 cut(s) 15, 235
EcoT38I GRGCYC 2 cut(s) 68, 200
ErhI CCWWGG 2 cut(s) 15, 235
FaeI CATG 1 cut(s) 247
FaiI YATR 4 cut(s) 42, 74, 245, 279
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FatI CATG 1 cut(s) 243
FblI GTMKAC 1 cut(s) 225
FokI GGATG 2 cut(s) 115, 155
FriOI GRGCYC 2 cut(s) 68, 200
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 1 cut(s) 50
HapII CCGG 2 cut(s) 47, 382
HgaI GACGC 1 cut(s) 155
Hin1I GRCGYC 1 cut(s) 147
Hin1II CATG 1 cut(s) 247
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 2 cut(s) 178, 301
HpaII CCGG 2 cut(s) 47, 382
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 3 cut(s) 79, 108, 226
Hpy188I TCNGA 1 cut(s) 32
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 3 cut(s) 79, 108, 226
HpyAV CCTTC 1 cut(s) 343
HpyCH4III ACNGT 1 cut(s) 264
HpyCH4V TGCA 3 cut(s) 156, 260, 292
HpyF3I CTNAG 4 cut(s) 86, 206, 252, 305
Hsp92I GRCGYC 1 cut(s) 147
Hsp92II CATG 1 cut(s) 247
Kzo9I GATC 1 cut(s) 246
LguI GCTCTTC 1 cut(s) 156
LpnPI CCDG 8 cut(s) 37, 60, 64, 73, 157, 195, 264, 395
LweI GCATC 1 cut(s) 395
MaeIII GTNAC 1 cut(s) 209
MalI GATC 1 cut(s) 248
MboI GATC 1 cut(s) 246
MboII GAAGA 3 cut(s) 128, 173, 294
MhlI GDGCHC 2 cut(s) 68, 200
MluCI AATT 2 cut(s) 21, 340
MlyI GAGTC 1 cut(s) 172
MnlI CCTC 4 cut(s) 95, 278, 345, 364
MseI TTAA 6 cut(s) 9, 60, 93, 231, 273, 399
MspCI CTTAAG 1 cut(s) 8
MspI CCGG 2 cut(s) 47, 382
MspR9I CCNGG 4 cut(s) 47, 52, 382, 383
Mva1269I GAATGC 1 cut(s) 262
MvaI CCWGG 1 cut(s) 52
NciI CCSGG 3 cut(s) 47, 382, 383
NdeII GATC 1 cut(s) 246
NlaIII CATG 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 209
PciSI GCTCTTC 1 cut(s) 156
PctI GAATGC 1 cut(s) 262
PfeI GAWTC 1 cut(s) 301
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
PshBI ATTAAT 1 cut(s) 93
Psp124BI GAGCTC 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 50
PspGI CCWGG 1 cut(s) 50
RsaI GTAC 2 cut(s) 107, 328
RsaNI GTAC 2 cut(s) 106, 327
SacI GAGCTC 1 cut(s) 68
SalI GTCGAC 1 cut(s) 224
SapI GCTCTTC 1 cut(s) 156
SaqAI TTAA 6 cut(s) 9, 60, 93, 231, 273, 399
Sau3AI GATC 1 cut(s) 246
ScaI AGTACT 1 cut(s) 328
SchI GAGTC 1 cut(s) 172
ScrFI CCNGG 4 cut(s) 47, 52, 382, 383
SduI GDGCHC 2 cut(s) 68, 200
SetI ASST 8 cut(s) 17, 68, 87, 187, 216, 222, 237, 337
SfaNI GCATC 1 cut(s) 395
SfcI CTRYAG 1 cut(s) 72
SmaI CCCGGG 1 cut(s) 383
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 2 cut(s) 21, 340
SstI GAGCTC 1 cut(s) 68
StyD4I CCNGG 4 cut(s) 45, 50, 380, 381
StyI CCWWGG 2 cut(s) 15, 235
TaaI ACNGT 1 cut(s) 264
TaqI TCGA 2 cut(s) 187, 225
TasI AATT 2 cut(s) 21, 340
TatI WGTACW 2 cut(s) 105, 326
TfiI GAWTC 1 cut(s) 301
Tru1I TTAA 6 cut(s) 9, 60, 93, 231, 273, 399
Tru9I TTAA 6 cut(s) 9, 60, 93, 231, 273, 399
TscAI CASTG 1 cut(s) 163
TseFI GTSAC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 1 cut(s) 17
TspMI CCCGGG 1 cut(s) 381
TspRI CASTG 1 cut(s) 163
Vha464I CTTAAG 1 cut(s) 8
VspI ATTAAT 1 cut(s) 93
XcmI CCANNNNNNNNNTGG 1 cut(s) 364
XmaI CCCGGG 1 cut(s) 381
XmiI GTMKAC 1 cut(s) 225
ZrmI AGTACT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.