Rh2DG278300

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000467
Physical Location & Seq
Forward (+)
31506627 .. 31516233
9607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG278300.1

Sequence Viewer

Length: 495 bp
ATGGAATTAAATAGTCTGGACATCTCCGGAATGAGACTGGAGGAGTTGCGAGTCTGGTTTTGTTTTCAAGAGTATATCAATGGAAGTTGGGTCAACATTTTTGCACCGAATCTACAATCATTCTCTTGGGGTTATTCAGGCATTACTGAAAGGTGTTCGATCCAGAGCTTTCCTATGCTCAAAAGATCTTTCATAAAGTCCCCCCTTACAACGAAGAAGATTAATAATAACAGTGTTGTCGATCTTCTTTCTGCTTCATCCCAAGTTGAAGACTTTATAATATCCGATCACTACCTCCAGATTCTATCAGAAATATATTCTGAATTATGCGGTCTACCATTCTCATTTATGAAACTGAAAACCTTGAGAATTGGGAGTCCAATGAAGCAAAGATATATCCCTGGTATGAATCTCTGCTATATGGGGTACAAGACTGACTCCATTCATGGACACAAAAAGACAGTATTATTACCTTCATATGATGCTGAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

164

Amino Acids

18.86

Weight (kDa)

7.65

Isoelectric Point (pI)

54.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 278
AccI GTMKAC 1 cut(s) 334
AccIII TCCGGA 1 cut(s) 26
AciI CCGC 1 cut(s) 330
AclWI GGATC 1 cut(s) 154
AfaI GTAC 1 cut(s) 428
AgsI TTSAA 2 cut(s) 68, 269
AjnI CCWGG 1 cut(s) 400
AluBI AGCT 1 cut(s) 168
AluI AGCT 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 28
AlwI GGATC 1 cut(s) 154
Aor13HI TCCGGA 1 cut(s) 26
AseI ATTAAT 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 276
BbvCI CCTCAGC 1 cut(s) 486
BciT130I CCWGG 1 cut(s) 402
BcoDI GTCTC 1 cut(s) 28
BglII AGATCT 1 cut(s) 185
Bme1390I CCNGG 1 cut(s) 402
BmrFI CCNGG 1 cut(s) 402
BmsI GCATC 1 cut(s) 472
BpiI GAAGAC 1 cut(s) 276
BpmI CTGGAG 2 cut(s) 59, 281
Bpu10I CCTNAGC 1 cut(s) 486
BpuEI CTTGAG 1 cut(s) 385
BsaJI CCNNGG 1 cut(s) 400
BsaWI WCCGGW 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 42
BseAI TCCGGA 1 cut(s) 26
BseBI CCWGG 1 cut(s) 402
BseDI CCNNGG 1 cut(s) 400
BseGI GGATG 1 cut(s) 257
BseMII CTCAG 1 cut(s) 477
BseNI ACTGG 1 cut(s) 42
BseRI GAGGAG 1 cut(s) 56
BsiSI CCGG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 28
BsmFI GGGAC 1 cut(s) 184
Bsp13I TCCGGA 1 cut(s) 26
Bsp143I GATC 4 cut(s) 159, 185, 241, 286
BspACI CCGC 1 cut(s) 330
BspCNI CTCAG 1 cut(s) 478
BspEI TCCGGA 1 cut(s) 26
BspPI GGATC 1 cut(s) 154
BsrI ACTGG 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 400
BssMI GATC 4 cut(s) 159, 185, 241, 286
Bst2UI CCWGG 1 cut(s) 402
Bst4CI ACNGT 2 cut(s) 233, 463
BstDEI CTNAG 1 cut(s) 486
BstF5I GGATG 1 cut(s) 257
BstKTI GATC 4 cut(s) 162, 188, 244, 289
BstMAI GTCTC 1 cut(s) 28
BstMBI GATC 4 cut(s) 159, 185, 241, 286
BstNI CCWGG 1 cut(s) 402
BstSCI CCNGG 1 cut(s) 400
BstV2I GAAGAC 1 cut(s) 276
BstX2I RGATCY 1 cut(s) 185
BstYI RGATCY 1 cut(s) 185
BtsCI GGATG 1 cut(s) 257
BtsIMutI CAGTG 1 cut(s) 238
Csp6I GTAC 1 cut(s) 427
CviAII CATG 1 cut(s) 446
CviJI RGCY 1 cut(s) 168
CviKI_1 RGCY 1 cut(s) 168
CviQI GTAC 1 cut(s) 427
DdeI CTNAG 1 cut(s) 486
DpnI GATC 4 cut(s) 161, 187, 243, 288
DpnII GATC 4 cut(s) 159, 185, 241, 286
EcoRII CCWGG 1 cut(s) 400
FaeI CATG 1 cut(s) 449
FaqI GGGAC 1 cut(s) 184
FatI CATG 1 cut(s) 445
FauNDI CATATG 1 cut(s) 478
FblI GTMKAC 1 cut(s) 334
FokI GGATG 1 cut(s) 244
GsuI CTGGAG 2 cut(s) 59, 281
HapII CCGG 1 cut(s) 27
Hin1II CATG 1 cut(s) 449
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HinfI GANTC 6 cut(s) 51, 109, 301, 376, 409, 437
HpaII CCGG 1 cut(s) 27
Hpy166II GTNNAC 2 cut(s) 94, 335
Hpy188I TCNGA 3 cut(s) 286, 310, 322
Hpy188III TCNNGA 5 cut(s) 17, 27, 68, 163, 298
Hpy8I GTNNAC 2 cut(s) 94, 335
HpyAV CCTTC 1 cut(s) 483
HpyCH4III ACNGT 2 cut(s) 233, 463
HpyCH4V TGCA 1 cut(s) 104
HpyF3I CTNAG 1 cut(s) 486
Hsp92II CATG 1 cut(s) 449
Kpn2I TCCGGA 1 cut(s) 26
Kzo9I GATC 4 cut(s) 159, 185, 241, 286
LpnPI CCDG 9 cut(s) 2, 23, 40, 40, 123, 176, 311, 387, 414
LweI GCATC 1 cut(s) 472
MalI GATC 4 cut(s) 161, 187, 243, 288
MboI GATC 4 cut(s) 159, 185, 241, 286
MboII GAAGA 4 cut(s) 226, 229, 236, 281
MflI RGATCY 1 cut(s) 185
MluCI AATT 3 cut(s) 5, 323, 369
MlyI GAGTC 3 cut(s) 60, 385, 431
MnlI CCTC 3 cut(s) 34, 305, 481
MroI TCCGGA 1 cut(s) 26
MseI TTAA 2 cut(s) 8, 222
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 402
MvaI CCWGG 1 cut(s) 402
NdeI CATATG 1 cut(s) 478
NdeII GATC 4 cut(s) 159, 185, 241, 286
NlaIII CATG 1 cut(s) 449
PfeI GAWTC 3 cut(s) 109, 301, 409
PleI GAGTC 3 cut(s) 59, 384, 431
PpsI GAGTC 3 cut(s) 59, 384, 431
PshBI ATTAAT 1 cut(s) 222
PsiI TTATAA 1 cut(s) 278
Psp6I CCWGG 1 cut(s) 400
PspGI CCWGG 1 cut(s) 400
PsuI RGATCY 1 cut(s) 185
RsaI GTAC 1 cut(s) 428
RsaNI GTAC 1 cut(s) 427
SaqAI TTAA 2 cut(s) 8, 222
Sau3AI GATC 4 cut(s) 159, 185, 241, 286
SchI GAGTC 3 cut(s) 60, 385, 431
ScrFI CCNGG 1 cut(s) 402
SetI ASST 6 cut(s) 155, 170, 297, 365, 475, 492
SfaNI GCATC 1 cut(s) 472
SmlI CTYRAG 1 cut(s) 364
SmoI CTYRAG 1 cut(s) 364
Sse9I AATT 3 cut(s) 5, 323, 369
SsiI CCGC 1 cut(s) 330
StyD4I CCNGG 1 cut(s) 400
TaaI ACNGT 2 cut(s) 233, 463
TaqI TCGA 2 cut(s) 158, 240
TasI AATT 3 cut(s) 5, 323, 369
TfiI GAWTC 3 cut(s) 109, 301, 409
Tru1I TTAA 2 cut(s) 8, 222
Tru9I TTAA 2 cut(s) 8, 222
TscAI CASTG 1 cut(s) 238
TspDTI ATGAA 7 cut(s) 181, 246, 365, 398, 422, 434, 465
TspRI CASTG 1 cut(s) 238
VspI ATTAAT 1 cut(s) 222
XmiI GTMKAC 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.