Rh2AG270600

Calmodulin-binding transcription activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000467
Physical Location & Seq
Forward (+)
32188338 .. 32188784
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG270600.1

Sequence Viewer

Length: 447 bp
ATGAAACTGAAAACCTTGAGAATTGGGAGTCCAATGAAGCAAAGATATATCCCTGGTATGGCATGCCTGTTCAAGAGCTCTCCCGTGGTCCACAACCTCGAGATTTGTTTTTACTCTTACAAAGAAGATGGCAAGTGGAACAACCAATCCTTGGATGATGCCAATTGCACCCAAGAACAATACTGGGAGACTCAGGGTCAATATTTGAGCCCCTCTCTTAGTCACCTAAAGGTGGTCAGAATTCGCCTTGGTGAAATGATCCCCGAGAGTGCAATCAAATTTCCAAAGTTTGTGCTCAAATATGGAAGAAACCTGCAAAAAATGAGTGTTAGCTTTGATATGAGCAAAAGTTGTCTACCTCCCAATTCGCTGAGTGATACCATTGCTTTAATAAAGAGTTTCCGCCGGGCATCTCCATATATCGAATTCTCAACTCATTGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000982 GO:0001077 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0032774 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0098542 GO:0099402 GO:0140110 GO:1900367 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000068 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 CG-1 IQ TIG

Protein Analysis

148

Amino Acids

17.1

Weight (kDa)

9.32

Isoelectric Point (pI)

64.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 321
AccB7I CCANNNNNTGG 1 cut(s) 151
AccI GTMKAC 1 cut(s) 355
AciI CCGC 1 cut(s) 403
AclWI GGATC 1 cut(s) 253
AcsI RAATTY 3 cut(s) 240, 278, 425
AfiI CCNNNNNNNGG 3 cut(s) 58, 151, 232
AgsI TTSAA 1 cut(s) 73
AhdI GACNNNNNGTC 1 cut(s) 195
AjnI CCWGG 1 cut(s) 52
AloI GAACNNNNNNTCC 2 cut(s) 131, 163
AluBI AGCT 2 cut(s) 78, 333
AluI AGCT 2 cut(s) 78, 333
Alw21I GWGCWC 2 cut(s) 80, 297
Alw26I GTCTC 1 cut(s) 182
AlwI GGATC 1 cut(s) 253
Ama87I CYCGRG 2 cut(s) 98, 263
ApoI RAATTY 3 cut(s) 240, 278, 425
AspS9I GGNCC 1 cut(s) 88
AsuC2I CCSGG 1 cut(s) 407
AsuHPI GGTGA 2 cut(s) 215, 263
AvaI CYCGRG 2 cut(s) 98, 263
AvaII GGWCC 1 cut(s) 88
BanII GRGCYC 2 cut(s) 80, 212
Bbv12I GWGCWC 2 cut(s) 80, 297
BccI CCATC 1 cut(s) 122
BciT130I CCWGG 1 cut(s) 54
BcnI CCSGG 1 cut(s) 407
BcoDI GTCTC 1 cut(s) 182
BfuAI ACCTGC 1 cut(s) 321
Bme1390I CCNGG 2 cut(s) 54, 407
Bme18I GGWCC 1 cut(s) 88
BmeRI GACNNNNNGTC 1 cut(s) 195
BmeT110I CYCGRG 2 cut(s) 98, 263
BmgT120I GGNCC 1 cut(s) 88
BmrFI CCNGG 2 cut(s) 54, 407
BmrI ACTGGG 1 cut(s) 193
BmsI GCATC 2 cut(s) 148, 419
BmuI ACTGGG 1 cut(s) 193
BplI GAGNNNNNCTC 2 cut(s) 199, 231
BpuEI CTTGAG 1 cut(s) 37
BpuMI CCSGG 1 cut(s) 407
BsaJI CCNNGG 4 cut(s) 52, 84, 150, 247
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 151, 232
Bse1I ACTGG 1 cut(s) 188
Bse3DI GCAATG 2 cut(s) 381, 436
BseBI CCWGG 1 cut(s) 54
BseDI CCNNGG 4 cut(s) 52, 84, 150, 247
BseGI GGATG 1 cut(s) 160
BseLI CCNNNNNNNGG 3 cut(s) 58, 151, 232
BseMI GCAATG 2 cut(s) 381, 436
BseMII CTCAG 2 cut(s) 206, 362
BseNI ACTGG 1 cut(s) 188
BsiHKAI GWGCWC 2 cut(s) 80, 297
BsiHKCI CYCGRG 2 cut(s) 98, 263
BsiSI CCGG 1 cut(s) 406
BslI CCNNNNNNNGG 3 cut(s) 58, 151, 232
BsmAI GTCTC 1 cut(s) 182
BsoBI CYCGRG 2 cut(s) 98, 263
Bsp1286I GDGCHC 3 cut(s) 80, 212, 297
Bsp143I GATC 1 cut(s) 258
BspACI CCGC 1 cut(s) 403
BspCNI CTCAG 2 cut(s) 205, 363
BspMI ACCTGC 1 cut(s) 321
BspPI GGATC 1 cut(s) 253
BsrDI GCAATG 2 cut(s) 381, 436
BsrI ACTGG 1 cut(s) 188
BssECI CCNNGG 4 cut(s) 52, 84, 150, 247
BssMI GATC 1 cut(s) 258
BssT1I CCWWGG 2 cut(s) 150, 247
Bst2UI CCWGG 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 3 cut(s) 192, 218, 371
BstDSI CCRYGG 1 cut(s) 84
BstF5I GGATG 1 cut(s) 160
BstKTI GATC 1 cut(s) 261
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 1 cut(s) 258
BstNI CCWGG 1 cut(s) 54
BstNSI RCATGY 1 cut(s) 66
BstSCI CCNGG 2 cut(s) 52, 405
BtgI CCRYGG 1 cut(s) 84
BtsCI GGATG 1 cut(s) 160
BveI ACCTGC 1 cut(s) 321
Cac8I GCNNGC 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 88
CviAII CATG 1 cut(s) 63
CviJI RGCY 3 cut(s) 78, 210, 333
CviKI_1 RGCY 3 cut(s) 78, 210, 333
DdeI CTNAG 3 cut(s) 192, 218, 371
DpnI GATC 1 cut(s) 260
DpnII GATC 1 cut(s) 258
DriI GACNNNNNGTC 1 cut(s) 195
Eam1105I GACNNNNNGTC 1 cut(s) 195
EciI GGCGGA 1 cut(s) 392
Ecl136II GAGCTC 1 cut(s) 78
Eco130I CCWWGG 2 cut(s) 150, 247
Eco24I GRGCYC 2 cut(s) 80, 212
Eco47I GGWCC 1 cut(s) 88
Eco53kI GAGCTC 1 cut(s) 78
Eco88I CYCGRG 2 cut(s) 98, 263
EcoICRI GAGCTC 1 cut(s) 78
EcoRI GAATTC 2 cut(s) 240, 425
EcoRII CCWGG 1 cut(s) 52
EcoT14I CCWWGG 2 cut(s) 150, 247
EcoT38I GRGCYC 2 cut(s) 80, 212
ErhI CCWWGG 2 cut(s) 150, 247
FaeI CATG 1 cut(s) 66
FaiI YATR 7 cut(s) 48, 59, 64, 303, 341, 418, 420
FatI CATG 1 cut(s) 62
FblI GTMKAC 1 cut(s) 355
FokI GGATG 1 cut(s) 167
FriOI GRGCYC 2 cut(s) 80, 212
HapII CCGG 1 cut(s) 406
Hin1II CATG 1 cut(s) 66
HinfI GANTC 2 cut(s) 28, 190
HpaII CCGG 1 cut(s) 406
HphI GGTGA 2 cut(s) 215, 263
Hpy166II GTNNAC 2 cut(s) 91, 356
Hpy188I TCNGA 1 cut(s) 239
Hpy188III TCNNGA 2 cut(s) 73, 100
Hpy8I GTNNAC 2 cut(s) 91, 356
HpyCH4V TGCA 3 cut(s) 168, 272, 316
HpyF3I CTNAG 3 cut(s) 192, 218, 371
Hsp92II CATG 1 cut(s) 66
Kzo9I GATC 1 cut(s) 258
LpnPI CCDG 7 cut(s) 39, 66, 80, 169, 179, 326, 419
LweI GCATC 2 cut(s) 148, 419
MaeIII GTNAC 1 cut(s) 221
MalI GATC 1 cut(s) 260
MboI GATC 1 cut(s) 258
MboII GAAGA 2 cut(s) 137, 318
MfeI CAATTG 1 cut(s) 163
MhlI GDGCHC 3 cut(s) 80, 212, 297
MluCI AATT 6 cut(s) 21, 163, 240, 278, 364, 425
MlyI GAGTC 2 cut(s) 37, 184
MnlI CCTC 3 cut(s) 107, 223, 369
MseI TTAA 1 cut(s) 389
MspI CCGG 1 cut(s) 406
MspR9I CCNGG 2 cut(s) 54, 407
MunI CAATTG 1 cut(s) 163
MvaI CCWGG 1 cut(s) 54
NciI CCSGG 1 cut(s) 407
NdeII GATC 1 cut(s) 258
NlaIII CATG 1 cut(s) 66
NmuCI GTSAC 1 cut(s) 221
NspI RCATGY 1 cut(s) 66
PaeI GCATGC 1 cut(s) 66
PaeR7I CTCGAG 1 cut(s) 98
PflMI CCANNNNNTGG 1 cut(s) 151
PleI GAGTC 2 cut(s) 36, 184
PpsI GAGTC 2 cut(s) 36, 184
Psp124BI GAGCTC 1 cut(s) 80
Psp6I CCWGG 1 cut(s) 52
PspGI CCWGG 1 cut(s) 52
PspPI GGNCC 1 cut(s) 88
SacI GAGCTC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 389
Sau3AI GATC 1 cut(s) 258
Sau96I GGNCC 1 cut(s) 88
SchI GAGTC 2 cut(s) 37, 184
ScrFI CCNGG 2 cut(s) 54, 407
SduI GDGCHC 3 cut(s) 80, 212, 297
SetI ASST 8 cut(s) 17, 80, 99, 228, 234, 315, 335, 361
SfaNI GCATC 2 cut(s) 148, 419
Sfr274I CTCGAG 1 cut(s) 98
SinI GGWCC 1 cut(s) 88
SlaI CTCGAG 1 cut(s) 98
SmlI CTYRAG 2 cut(s) 16, 98
SmoI CTYRAG 2 cut(s) 16, 98
SphI GCATGC 1 cut(s) 66
Sse9I AATT 6 cut(s) 21, 163, 240, 278, 364, 425
SsiI CCGC 1 cut(s) 403
SspI AATATT 1 cut(s) 203
SstI GAGCTC 1 cut(s) 80
StyD4I CCNGG 2 cut(s) 52, 405
StyI CCWWGG 2 cut(s) 150, 247
TaqI TCGA 2 cut(s) 99, 423
TasI AATT 6 cut(s) 21, 163, 240, 278, 364, 425
Tru1I TTAA 1 cut(s) 389
Tru9I TTAA 1 cut(s) 389
TseFI GTSAC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 2 cut(s) 17, 50
Van91I CCANNNNNTGG 1 cut(s) 151
VpaK11BI GGWCC 1 cut(s) 88
XapI RAATTY 3 cut(s) 240, 278, 425
XceI RCATGY 1 cut(s) 66
XhoI CTCGAG 1 cut(s) 98
XmiI GTMKAC 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.