Rh4CG167300

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000467
Physical Location & Seq
Reverse (-)
36830447 .. 36830893
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG167300.1

Sequence Viewer

Length: 447 bp
ATGAAACTTAAGACCTTGGATATTTATCTCGATGAAAGATATTTCCCGGCCCGAGGTATAGCATGCCTATTCAAGAGTTCTGTAGTCCACAGACTGAGGATTCATCTTTTTGTGGACTCTTATGAAGAAAATTATGATGAGTGGACCGACTTGGATTACGCCAACTGTACTGAAAAGCAATACTGCGACACTCGAGCTCAATATTTGAGCCCCTTTCTTAGTCACCTAAAGGTGGTCGACATTAACCTTGGCACCATGATCCCTGAGAATGCAGTAACTTTTGCAAAATTTTTCCTTAAATATGTTAGAGGCTTGCAAAAGGTGAATCTTAGATATTGTAGGGGAAAATGTAATCTACCTCCCAATTTGCTGAAAGATATCATTGCTTTAATGGAGGGTCTCCCCCGGGCATCTGCAGATGTTGAAATCTCAATTTCTTGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

148

Amino Acids

17.22

Weight (kDa)

7.58

Isoelectric Point (pI)

32.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 251
AccI GTMKAC 1 cut(s) 237
AclWI GGATC 1 cut(s) 253
AcsI RAATTY 1 cut(s) 287
AfaI GTAC 1 cut(s) 169
AfiI CCNNNNNNNGG 2 cut(s) 53, 232
AflII CTTAAG 1 cut(s) 8
AgsI TTSAA 2 cut(s) 73, 425
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
Alw21I GWGCWC 1 cut(s) 199
Alw26I GTCTC 1 cut(s) 404
AlwI GGATC 1 cut(s) 253
Ama87I CYCGRG 3 cut(s) 51, 192, 405
AoxI GGCC 1 cut(s) 48
ApoI RAATTY 1 cut(s) 287
AspS9I GGNCC 2 cut(s) 49, 144
AsuC2I CCSGG 3 cut(s) 47, 406, 407
AsuHPI GGTGA 2 cut(s) 215, 334
AvaI CYCGRG 3 cut(s) 51, 192, 405
AvaII GGWCC 1 cut(s) 144
BanI GGYRCC 1 cut(s) 251
BanII GRGCYC 2 cut(s) 199, 212
Bbv12I GWGCWC 1 cut(s) 199
BcnI CCSGG 3 cut(s) 47, 406, 407
BcoDI GTCTC 1 cut(s) 404
BfmI CTRYAG 2 cut(s) 81, 414
BfrI CTTAAG 1 cut(s) 8
Bme1390I CCNGG 3 cut(s) 47, 406, 407
Bme18I GGWCC 1 cut(s) 144
BmeT110I CYCGRG 3 cut(s) 51, 192, 405
BmgT120I GGNCC 2 cut(s) 49, 144
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 3 cut(s) 47, 406, 407
BmsI GCATC 1 cut(s) 419
BpuMI CCSGG 3 cut(s) 47, 406, 407
BsaBI GATNNNNATC 1 cut(s) 24
BsaI GGTCTC 1 cut(s) 404
BsaJI CCNNGG 5 cut(s) 15, 52, 247, 404, 405
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 232
Bse3DI GCAATG 1 cut(s) 381
Bse8I GATNNNNATC 1 cut(s) 24
BseDI CCNNGG 5 cut(s) 15, 52, 247, 404, 405
BseJI GATNNNNATC 1 cut(s) 24
BseLI CCNNNNNNNGG 2 cut(s) 53, 232
BseMI GCAATG 1 cut(s) 381
BseMII CTCAG 2 cut(s) 86, 255
BshFI GGCC 1 cut(s) 50
BshNI GGYRCC 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 199
BsiHKCI CYCGRG 3 cut(s) 51, 192, 405
BsiSI CCGG 2 cut(s) 47, 406
BslI CCNNNNNNNGG 2 cut(s) 53, 232
BsmAI GTCTC 1 cut(s) 404
BsmI GAATGC 1 cut(s) 274
BsnI GGCC 1 cut(s) 50
Bso31I GGTCTC 1 cut(s) 404
BsoBI CYCGRG 3 cut(s) 51, 192, 405
Bsp1286I GDGCHC 2 cut(s) 199, 212
Bsp143I GATC 1 cut(s) 258
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 2 cut(s) 87, 256
BspLI GGNNCC 1 cut(s) 253
BspMAI CTGCAG 1 cut(s) 418
BspPI GGATC 1 cut(s) 253
BspT107I GGYRCC 1 cut(s) 251
BspTI CTTAAG 1 cut(s) 8
BspTNI GGTCTC 1 cut(s) 404
BsrDI GCAATG 1 cut(s) 381
BssECI CCNNGG 5 cut(s) 15, 52, 247, 404, 405
BssMI GATC 1 cut(s) 258
BssT1I CCWWGG 2 cut(s) 15, 247
Bst4CI ACNGT 1 cut(s) 167
BstAFI CTTAAG 1 cut(s) 8
BstC8I GCNNGC 2 cut(s) 64, 314
BstDEI CTNAG 4 cut(s) 95, 218, 264, 329
BstKTI GATC 1 cut(s) 261
BstMAI GTCTC 1 cut(s) 404
BstMBI GATC 1 cut(s) 258
BstNSI RCATGY 1 cut(s) 66
BstSCI CCNGG 3 cut(s) 45, 404, 405
BstSFI CTRYAG 2 cut(s) 81, 414
BsuRI GGCC 1 cut(s) 50
Cac8I GCNNGC 2 cut(s) 64, 314
Cfr13I GGNCC 2 cut(s) 49, 144
Cfr9I CCCGGG 1 cut(s) 405
Csp6I GTAC 1 cut(s) 168
CviAII CATG 2 cut(s) 63, 256
CviJI RGCY 4 cut(s) 50, 197, 210, 312
CviKI_1 RGCY 4 cut(s) 50, 197, 210, 312
CviQI GTAC 1 cut(s) 168
DdeI CTNAG 4 cut(s) 95, 218, 264, 329
DpnI GATC 1 cut(s) 260
DpnII GATC 1 cut(s) 258
Ecl136II GAGCTC 1 cut(s) 197
Eco130I CCWWGG 2 cut(s) 15, 247
Eco24I GRGCYC 2 cut(s) 199, 212
Eco31I GGTCTC 1 cut(s) 404
Eco32I GATATC 1 cut(s) 379
Eco47I GGWCC 1 cut(s) 144
Eco53kI GAGCTC 1 cut(s) 197
Eco88I CYCGRG 3 cut(s) 51, 192, 405
EcoICRI GAGCTC 1 cut(s) 197
EcoRV GATATC 1 cut(s) 379
EcoT14I CCWWGG 2 cut(s) 15, 247
EcoT38I GRGCYC 2 cut(s) 199, 212
ErhI CCWWGG 2 cut(s) 15, 247
FaeI CATG 2 cut(s) 66, 259
FaiI YATR 6 cut(s) 59, 64, 123, 135, 257, 303
FatI CATG 2 cut(s) 62, 255
FblI GTMKAC 1 cut(s) 237
FriOI GRGCYC 2 cut(s) 199, 212
HaeIII GGCC 1 cut(s) 50
HapII CCGG 2 cut(s) 47, 406
Hin1II CATG 2 cut(s) 66, 259
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 3 cut(s) 100, 116, 325
HpaII CCGG 2 cut(s) 47, 406
HphI GGTGA 2 cut(s) 215, 334
Hpy166II GTNNAC 4 cut(s) 88, 115, 144, 238
Hpy188III TCNNGA 2 cut(s) 29, 73
Hpy8I GTNNAC 4 cut(s) 88, 115, 144, 238
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4V TGCA 4 cut(s) 272, 284, 316, 416
HpyF3I CTNAG 4 cut(s) 95, 218, 264, 329
Hsp92II CATG 2 cut(s) 66, 259
Kzo9I GATC 1 cut(s) 258
LpnPI CCDG 3 cut(s) 60, 276, 419
LweI GCATC 1 cut(s) 419
MaeIII GTNAC 2 cut(s) 221, 274
MalI GATC 1 cut(s) 260
MboI GATC 1 cut(s) 258
MboII GAAGA 1 cut(s) 137
MhlI GDGCHC 2 cut(s) 199, 212
MluCI AATT 4 cut(s) 130, 287, 364, 432
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 5 cut(s) 47, 90, 302, 369, 388
MseI TTAA 4 cut(s) 9, 243, 297, 389
MspCI CTTAAG 1 cut(s) 8
MspI CCGG 2 cut(s) 47, 406
MspR9I CCNGG 3 cut(s) 47, 406, 407
Mva1269I GAATGC 1 cut(s) 274
NciI CCSGG 3 cut(s) 47, 406, 407
NdeII GATC 1 cut(s) 258
NlaIII CATG 2 cut(s) 66, 259
NlaIV GGNNCC 1 cut(s) 253
NmuCI GTSAC 1 cut(s) 221
NspI RCATGY 1 cut(s) 66
PaeI GCATGC 1 cut(s) 66
PaeR7I CTCGAG 1 cut(s) 192
PctI GAATGC 1 cut(s) 274
PfeI GAWTC 2 cut(s) 100, 325
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
Psp124BI GAGCTC 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 253
PspPI GGNCC 2 cut(s) 49, 144
PspXI VCTCGAGB 1 cut(s) 192
PstI CTGCAG 1 cut(s) 418
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
SacI GAGCTC 1 cut(s) 199
SalI GTCGAC 1 cut(s) 236
SaqAI TTAA 4 cut(s) 9, 243, 297, 389
Sau3AI GATC 1 cut(s) 258
Sau96I GGNCC 2 cut(s) 49, 144
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 3 cut(s) 47, 406, 407
SduI GDGCHC 2 cut(s) 199, 212
SetI ASST 8 cut(s) 17, 58, 199, 228, 234, 249, 324, 361
SfaNI GCATC 1 cut(s) 419
SfcI CTRYAG 2 cut(s) 81, 414
Sfr274I CTCGAG 1 cut(s) 192
SinI GGWCC 1 cut(s) 144
SlaI CTCGAG 1 cut(s) 192
SmaI CCCGGG 1 cut(s) 407
SmlI CTYRAG 2 cut(s) 8, 192
SmoI CTYRAG 2 cut(s) 8, 192
SphI GCATGC 1 cut(s) 66
Sse9I AATT 4 cut(s) 130, 287, 364, 432
SspI AATATT 1 cut(s) 203
SstI GAGCTC 1 cut(s) 199
StyD4I CCNGG 3 cut(s) 45, 404, 405
StyI CCWWGG 2 cut(s) 15, 247
TaaI ACNGT 1 cut(s) 167
TaqI TCGA 3 cut(s) 30, 193, 237
TaqII GACCGA 1 cut(s) 161
TasI AATT 4 cut(s) 130, 287, 364, 432
TatI WGTACW 1 cut(s) 167
TfiI GAWTC 2 cut(s) 100, 325
Tru1I TTAA 4 cut(s) 9, 243, 297, 389
Tru9I TTAA 4 cut(s) 9, 243, 297, 389
TseFI GTSAC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 4 cut(s) 17, 48, 92, 138
TspMI CCCGGG 1 cut(s) 405
Vha464I CTTAAG 1 cut(s) 8
VpaK11BI GGWCC 1 cut(s) 144
XapI RAATTY 1 cut(s) 287
XceI RCATGY 1 cut(s) 66
XhoI CTCGAG 1 cut(s) 192
XmaI CCCGGG 1 cut(s) 405
XmiI GTMKAC 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.