RLG00000033939

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000467
Physical Location & Seq
Reverse (-)
34465270 .. 34465686
417 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033939

Sequence Viewer

Length: 417 bp
ATGAAGCAAAGATATATCCCGGGTATAGCATGCCTGTTGAAGAGCTCTCCCTTAGTTCACACCCTCTACTTTGAATTTTACTCTTTCGAAGAAAATGGTAAGTGGAATAACATTATGTTGGATAACGCCAATTGCACTCAAGAGCAATACTGGGAAACTCAGGCCCAACATTTGATCCCCTTTCTTAGTCACCTAAAGGTGGTCAAGATTGGCCTTGGTAACATGATCTCTGAGAGTGCAATCACTTCTGCAAAGTTTTTGCTTAAATATGGAAGAGGCCTGCAAAAAATGACTCTTAGCTTTTGGAGGAGGAGCGGAAGTTCACTTTCTCCGAATTCACTAAATGATACCATTGATTTATTAAAGGATTTCCCCTGGGCATCTGCAGATGTTGAGTTCTCAAGATTCTGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

139

Amino Acids

15.93

Weight (kDa)

8.44

Isoelectric Point (pI)

42.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 315
AciI CCGC 1 cut(s) 315
AclWI GGATC 1 cut(s) 169
AcsI RAATTY 2 cut(s) 74, 334
AfiI CCNNNNNNNGG 1 cut(s) 199
AgsI TTSAA 2 cut(s) 40, 74
AjnI CCWGG 1 cut(s) 374
AloI GAACNNNNNNTCC 2 cut(s) 304, 336
AluBI AGCT 2 cut(s) 45, 300
AluI AGCT 2 cut(s) 45, 300
Alw21I GWGCWC 1 cut(s) 47
AlwI GGATC 1 cut(s) 169
Ama87I CYCGRG 1 cut(s) 19
AoxI GGCC 3 cut(s) 162, 211, 277
ApoI RAATTY 2 cut(s) 74, 334
AspS9I GGNCC 1 cut(s) 163
AsuC2I CCSGG 2 cut(s) 20, 21
AsuHPI GGTGA 1 cut(s) 182
AsuII TTCGAA 1 cut(s) 87
AvaI CYCGRG 1 cut(s) 19
BanII GRGCYC 1 cut(s) 47
Bbv12I GWGCWC 1 cut(s) 47
BciT130I CCWGG 1 cut(s) 376
BcnI CCSGG 2 cut(s) 20, 21
BfmI CTRYAG 1 cut(s) 384
Bme1390I CCNGG 3 cut(s) 20, 21, 376
BmeT110I CYCGRG 1 cut(s) 19
BmgT120I GGNCC 1 cut(s) 163
BmrFI CCNGG 3 cut(s) 20, 21, 376
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 1 cut(s) 389
BmuI ACTGGG 1 cut(s) 160
Bpu14I TTCGAA 1 cut(s) 87
BpuEI CTTGAG 2 cut(s) 123, 385
BpuMI CCSGG 2 cut(s) 20, 21
BsaJI CCNNGG 4 cut(s) 19, 214, 374, 375
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse1I ACTGG 1 cut(s) 155
BseBI CCWGG 1 cut(s) 376
BseDI CCNNGG 4 cut(s) 19, 214, 374, 375
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMII CTCAG 2 cut(s) 173, 222
BseNI ACTGG 1 cut(s) 155
BseRI GAGGAG 2 cut(s) 322, 325
BshFI GGCC 3 cut(s) 164, 213, 279
BsiHKAI GWGCWC 1 cut(s) 47
BsiHKCI CYCGRG 1 cut(s) 19
BsiSI CCGG 1 cut(s) 20
BslI CCNNNNNNNGG 1 cut(s) 199
BsnI GGCC 3 cut(s) 164, 213, 279
BsoBI CYCGRG 1 cut(s) 19
Bsp119I TTCGAA 1 cut(s) 87
Bsp1286I GDGCHC 1 cut(s) 47
Bsp143I GATC 2 cut(s) 174, 225
BspACI CCGC 1 cut(s) 315
BspANI GGCC 3 cut(s) 164, 213, 279
BspCNI CTCAG 2 cut(s) 172, 223
BspMAI CTGCAG 1 cut(s) 388
BspPI GGATC 1 cut(s) 169
BspQI GCTCTTC 1 cut(s) 35
BspT104I TTCGAA 1 cut(s) 87
BsrBI CCGCTC 1 cut(s) 315
BsrI ACTGG 1 cut(s) 155
BssECI CCNNGG 4 cut(s) 19, 214, 374, 375
BssMI GATC 2 cut(s) 174, 225
BssT1I CCWWGG 1 cut(s) 214
Bst2UI CCWGG 1 cut(s) 376
Bst6I CTCTTC 2 cut(s) 35, 268
BstBI TTCGAA 1 cut(s) 87
BstC8I GCNNGC 2 cut(s) 31, 281
BstDEI CTNAG 5 cut(s) 52, 159, 185, 231, 296
BstKTI GATC 2 cut(s) 177, 228
BstMBI GATC 2 cut(s) 174, 225
BstNI CCWGG 1 cut(s) 376
BstNSI RCATGY 1 cut(s) 33
BstSCI CCNGG 3 cut(s) 18, 19, 374
BstSFI CTRYAG 1 cut(s) 384
BsuRI GGCC 3 cut(s) 164, 213, 279
Cac8I GCNNGC 2 cut(s) 31, 281
Cfr13I GGNCC 1 cut(s) 163
Cfr9I CCCGGG 1 cut(s) 19
CviAII CATG 2 cut(s) 30, 223
CviJI RGCY 5 cut(s) 45, 164, 213, 279, 300
CviKI_1 RGCY 5 cut(s) 45, 164, 213, 279, 300
DdeI CTNAG 5 cut(s) 52, 159, 185, 231, 296
DpnI GATC 2 cut(s) 176, 227
DpnII GATC 2 cut(s) 174, 225
Eam1104I CTCTTC 2 cut(s) 35, 268
EarI CTCTTC 2 cut(s) 35, 268
Ecl136II GAGCTC 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 214
Eco147I AGGCCT 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 47
Eco53kI GAGCTC 1 cut(s) 45
Eco88I CYCGRG 1 cut(s) 19
EcoICRI GAGCTC 1 cut(s) 45
EcoRI GAATTC 1 cut(s) 334
EcoRII CCWGG 1 cut(s) 374
EcoT14I CCWWGG 1 cut(s) 214
EcoT38I GRGCYC 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 214
FaeI CATG 2 cut(s) 33, 226
FaiI YATR 6 cut(s) 15, 26, 31, 116, 224, 270
FatI CATG 2 cut(s) 29, 222
FriOI GRGCYC 1 cut(s) 47
HaeIII GGCC 3 cut(s) 164, 213, 279
HapII CCGG 1 cut(s) 20
Hin1II CATG 2 cut(s) 33, 226
HinfI GANTC 2 cut(s) 292, 405
HpaII CCGG 1 cut(s) 20
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 2 cut(s) 58, 323
Hpy188I TCNGA 2 cut(s) 232, 333
Hpy188III TCNNGA 3 cut(s) 140, 205, 402
Hpy8I GTNNAC 2 cut(s) 58, 323
HpyCH4V TGCA 5 cut(s) 135, 239, 251, 283, 386
HpyF3I CTNAG 5 cut(s) 52, 159, 185, 231, 296
Hsp92II CATG 2 cut(s) 33, 226
Kzo9I GATC 2 cut(s) 174, 225
LguI GCTCTTC 1 cut(s) 35
LmnI GCTCC 1 cut(s) 312
LpnPI CCDG 7 cut(s) 33, 47, 136, 146, 293, 361, 388
LweI GCATC 1 cut(s) 389
MaeIII GTNAC 2 cut(s) 188, 218
MalI GATC 2 cut(s) 176, 227
MbiI CCGCTC 1 cut(s) 315
MboI GATC 2 cut(s) 174, 225
MboII GAAGA 3 cut(s) 52, 101, 285
MfeI CAATTG 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 47
MluCI AATT 3 cut(s) 74, 130, 334
MlyI GAGTC 1 cut(s) 286
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 4 cut(s) 74, 269, 300, 303
MseI TTAA 2 cut(s) 264, 362
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 3 cut(s) 20, 21, 376
MunI CAATTG 1 cut(s) 130
MvaI CCWGG 1 cut(s) 376
NciI CCSGG 2 cut(s) 20, 21
NdeII GATC 2 cut(s) 174, 225
NlaIII CATG 2 cut(s) 33, 226
NmuCI GTSAC 1 cut(s) 188
NspI RCATGY 1 cut(s) 33
NspV TTCGAA 1 cut(s) 87
PaeI GCATGC 1 cut(s) 33
PasI CCCWGGG 1 cut(s) 375
PceI AGGCCT 1 cut(s) 279
PciSI GCTCTTC 1 cut(s) 35
PfeI GAWTC 1 cut(s) 405
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
Psp124BI GAGCTC 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 374
PspGI CCWGG 1 cut(s) 374
PspPI GGNCC 1 cut(s) 163
PstI CTGCAG 1 cut(s) 388
SacI GAGCTC 1 cut(s) 47
SapI GCTCTTC 1 cut(s) 35
SaqAI TTAA 2 cut(s) 264, 362
Sau3AI GATC 2 cut(s) 174, 225
Sau96I GGNCC 1 cut(s) 163
SchI GAGTC 1 cut(s) 286
ScrFI CCNGG 3 cut(s) 20, 21, 376
SduI GDGCHC 1 cut(s) 47
SetI ASST 4 cut(s) 47, 195, 201, 302
SfaNI GCATC 1 cut(s) 389
SfcI CTRYAG 1 cut(s) 384
SfuI TTCGAA 1 cut(s) 87
SmaI CCCGGG 1 cut(s) 21
SmlI CTYRAG 2 cut(s) 138, 400
SmoI CTYRAG 2 cut(s) 138, 400
SphI GCATGC 1 cut(s) 33
Sse9I AATT 3 cut(s) 74, 130, 334
SseBI AGGCCT 1 cut(s) 279
SsiI CCGC 1 cut(s) 315
SstI GAGCTC 1 cut(s) 47
StuI AGGCCT 1 cut(s) 279
StyD4I CCNGG 3 cut(s) 18, 19, 374
StyI CCWWGG 1 cut(s) 214
TaqI TCGA 1 cut(s) 87
TasI AATT 3 cut(s) 74, 130, 334
TfiI GAWTC 1 cut(s) 405
Tru1I TTAA 2 cut(s) 264, 362
Tru9I TTAA 2 cut(s) 264, 362
TseFI GTSAC 1 cut(s) 188
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 1 cut(s) 17
TspMI CCCGGG 1 cut(s) 19
XapI RAATTY 2 cut(s) 74, 334
XceI RCATGY 1 cut(s) 33
XmaI CCCGGG 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.