RLG00000028481

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000467
Physical Location & Seq
Forward (+)
23285025 .. 23286819
1795 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028481

Sequence Viewer

Length: 954 bp
ATGAGCGACAGAATCAGCAATCTTCCTGATCGTGTACTGCACCACACACTCTCTTTTCTACCCATCAAATCCATTGCCCAAACTAGTCTGTTATCTAAGAGATGGAATTCTATATGGGGTTCCATTCCTATCCTCGACTTCTCCACCGTTCCTCTTCCAAACCTCGATCCTGAAAATCAAAGTAAAGCACTGGCATCGATCATAACTTCTGTGTTGAGCCGCCACCGTGAAGACTCTAATGTAAAGTTGGATGCCCACATTTCATGGTTTGTATCTCCATCATTTTTGTCGGGAGCTACCAATGGTCTCGGTTCACTTCACACCTTGTCTCTAGCTCATGTGGATTTCTTGTTTAATTGTTTGTGTGAGGATTTGTTTACTGGTTCTTCATTCCCTTGTCTCGAGAGTTTGACCATTCAGAGTTGTAATGGAATGACTCATCTGAAAATTAGCTGTCCCAACCTGAAAGTTGTGCACGTGAATTCGATGAATATAAACAGCCTGGACATCTCCGGAATGAGACTGGAGAGTTTGCGAGTCTCGTTTTCTTTCTTCAGGTGTGACAGTGAAAGCTGGGTCAGCGTTTTCGCTCCAAATCTGAAAACTTTCTCTTGGTTGGCTAATTGCATTACTGAGAAATGTTTGATCCATGGCTTTCCTGCCCTGAAAACATCTCACATAAACTGTCGGTGTCCAGACGATCTTAGCATGGCGAAGATTCATAGTGCAGTAAATCTTGTTTGGGCATCATCCCAAGTTCAAAGCCTTGTCAAATCCCGCGACTTTCTCCGGGTTTTATCAAAAATCTATCTTGAAGGTGGTGGTCTACTACATCCATTTGTTCAGCTTCAGACCTTGAAAATTCAGACTACTAGTCTGAACAGACATGATATTCCAGGTATATATGGCTTGCCTATTCAAGAGCTCTCCAACTGTCCAGACCATCATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

318

Amino Acids

35.25

Weight (kDa)

7.64

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 44 1.2e-09 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 826
AccII CGCG 1 cut(s) 780
AccIII TCCGGA 1 cut(s) 512
AciI CCGC 2 cut(s) 220, 778
AclWI GGATC 2 cut(s) 161, 640
AcsI RAATTY 3 cut(s) 106, 481, 861
AcuI CTGAAG 2 cut(s) 538, 833
AcvI CACGTG 1 cut(s) 478
AfaI GTAC 1 cut(s) 36
AgsI TTSAA 4 cut(s) 761, 815, 859, 920
AhdI GACNNNNNGTC 1 cut(s) 873
AhlI ACTAGT 2 cut(s) 83, 872
AjnI CCWGG 2 cut(s) 501, 895
AluBI AGCT 6 cut(s) 296, 335, 453, 573, 847, 925
AluI AGCT 6 cut(s) 296, 335, 453, 573, 847, 925
Alw21I GWGCWC 2 cut(s) 477, 927
Alw26I GTCTC 5 cut(s) 311, 333, 404, 514, 544
Alw44I GTGCAC 1 cut(s) 473
AlwI GGATC 2 cut(s) 161, 640
Ama87I CYCGRG 1 cut(s) 401
Aor13HI TCCGGA 1 cut(s) 512
ApaLI GTGCAC 1 cut(s) 473
ApoI RAATTY 3 cut(s) 106, 481, 861
Asp700I GAANNNNTTC 1 cut(s) 605
AsuC2I CCSGG 1 cut(s) 791
AvaI CYCGRG 1 cut(s) 401
BaeGI GKGCMC 1 cut(s) 477
BanII GRGCYC 1 cut(s) 927
BbrPI CACGTG 1 cut(s) 478
BbsI GAAGAC 1 cut(s) 237
Bbv12I GWGCWC 2 cut(s) 477, 927
BccI CCATC 4 cut(s) 71, 96, 286, 951
BcgI CGANNNNNNTGC 2 cut(s) 177, 211
BciT130I CCWGG 2 cut(s) 503, 897
BcnI CCSGG 1 cut(s) 791
BcoDI GTCTC 5 cut(s) 311, 333, 404, 514, 544
BcuI ACTAGT 2 cut(s) 83, 872
BfaI CTAG 3 cut(s) 84, 332, 873
BisI GCNGC 1 cut(s) 220
BlsI GCNGC 1 cut(s) 221
Bme1390I CCNGG 3 cut(s) 503, 791, 897
BmeRI GACNNNNNGTC 1 cut(s) 873
BmeT110I CYCGRG 1 cut(s) 401
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 3 cut(s) 503, 791, 897
BmsI GCATC 3 cut(s) 203, 241, 755
BpiI GAAGAC 1 cut(s) 237
BpmI CTGGAG 1 cut(s) 545
BpuMI CCSGG 1 cut(s) 791
Bsa29I ATCGAT 1 cut(s) 197
BsaAI YACGTR 1 cut(s) 478
BsaI GGTCTC 1 cut(s) 311
BsaJI CCNNGG 1 cut(s) 649
BsaWI WCCGGW 1 cut(s) 512
Bse1I ACTGG 3 cut(s) 195, 385, 528
Bse3DI GCAATG 1 cut(s) 72
BseAI TCCGGA 1 cut(s) 512
BseBI CCWGG 2 cut(s) 503, 897
BseCI ATCGAT 1 cut(s) 197
BseDI CCNNGG 1 cut(s) 649
BseGI GGATG 3 cut(s) 256, 749, 832
BseMI GCAATG 1 cut(s) 72
BseMII CTCAG 1 cut(s) 624
BseNI ACTGG 3 cut(s) 195, 385, 528
BseSI GKGCMC 1 cut(s) 477
BseYI CCCAGC 1 cut(s) 573
BsgI GTGCAG 2 cut(s) 23, 747
Bsh1236I CGCG 1 cut(s) 780
BshVI ATCGAT 1 cut(s) 197
BsiHKAI GWGCWC 2 cut(s) 477, 927
BsiHKCI CYCGRG 1 cut(s) 401
BsiSI CCGG 2 cut(s) 513, 790
BslFI GGGAC 1 cut(s) 441
BsmAI GTCTC 5 cut(s) 311, 333, 404, 514, 544
BsmFI GGGAC 1 cut(s) 441
Bso31I GGTCTC 1 cut(s) 311
BsoBI CYCGRG 1 cut(s) 401
Bsp1286I GDGCHC 2 cut(s) 477, 927
Bsp13I TCCGGA 1 cut(s) 512
Bsp143I GATC 5 cut(s) 28, 166, 198, 645, 700
Bsp19I CCATGG 1 cut(s) 649
BspACI CCGC 2 cut(s) 220, 778
BspCNI CTCAG 1 cut(s) 625
BspDI ATCGAT 1 cut(s) 197
BspEI TCCGGA 1 cut(s) 512
BspFNI CGCG 1 cut(s) 780
BspLI GGNNCC 1 cut(s) 121
BspPI GGATC 2 cut(s) 161, 640
BspTNI GGTCTC 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 72
BsrI ACTGG 3 cut(s) 195, 385, 528
BssECI CCNNGG 1 cut(s) 649
BssMI GATC 5 cut(s) 28, 166, 198, 645, 700
BssT1I CCWWGG 1 cut(s) 649
Bst2UI CCWGG 2 cut(s) 503, 897
Bst4CI ACNGT 5 cut(s) 148, 227, 566, 686, 935
Bst6I CTCTTC 1 cut(s) 159
BstBAI YACGTR 1 cut(s) 478
BstC8I GCNNGC 1 cut(s) 911
BstDEI CTNAG 3 cut(s) 96, 633, 704
BstDSI CCRYGG 1 cut(s) 649
BstF5I GGATG 3 cut(s) 256, 749, 832
BstFNI CGCG 1 cut(s) 780
BstKTI GATC 5 cut(s) 31, 169, 201, 648, 703
BstMAI GTCTC 5 cut(s) 311, 333, 404, 514, 544
BstMBI GATC 5 cut(s) 28, 166, 198, 645, 700
BstMWI GCNNNNNNNGC 1 cut(s) 579
BstNI CCWGG 2 cut(s) 503, 897
BstSCI CCNGG 3 cut(s) 501, 789, 895
BstSLI GKGCMC 1 cut(s) 477
BstUI CGCG 1 cut(s) 780
BstV2I GAAGAC 1 cut(s) 237
Bsu15I ATCGAT 1 cut(s) 197
BsuTUI ATCGAT 1 cut(s) 197
BtgI CCRYGG 1 cut(s) 649
BtsCI GGATG 3 cut(s) 256, 749, 832
BtsIMutI CAGTG 2 cut(s) 188, 571
Cac8I GCNNGC 1 cut(s) 911
ClaI ATCGAT 1 cut(s) 197
Csp6I GTAC 1 cut(s) 35
CviAII CATG 5 cut(s) 264, 338, 650, 709, 887
CviQI GTAC 1 cut(s) 35
DdeI CTNAG 3 cut(s) 96, 633, 704
DpnI GATC 5 cut(s) 30, 168, 200, 647, 702
DpnII GATC 5 cut(s) 28, 166, 198, 645, 700
DriI GACNNNNNGTC 1 cut(s) 873
Eam1104I CTCTTC 1 cut(s) 159
Eam1105I GACNNNNNGTC 1 cut(s) 873
EarI CTCTTC 1 cut(s) 159
Ecl136II GAGCTC 1 cut(s) 925
Eco130I CCWWGG 1 cut(s) 649
Eco24I GRGCYC 1 cut(s) 927
Eco31I GGTCTC 1 cut(s) 311
Eco53kI GAGCTC 1 cut(s) 925
Eco57I CTGAAG 2 cut(s) 538, 833
Eco72I CACGTG 1 cut(s) 478
Eco88I CYCGRG 1 cut(s) 401
EcoICRI GAGCTC 1 cut(s) 925
EcoRI GAATTC 2 cut(s) 106, 481
EcoRII CCWGG 2 cut(s) 501, 895
EcoT14I CCWWGG 1 cut(s) 649
EcoT38I GRGCYC 1 cut(s) 927
ErhI CCWWGG 1 cut(s) 649
FaeI CATG 5 cut(s) 267, 341, 653, 712, 890
FaqI GGGAC 1 cut(s) 441
FatI CATG 5 cut(s) 263, 337, 649, 708, 886
FauI CCCGC 1 cut(s) 785
FblI GTMKAC 1 cut(s) 826
Fnu4HI GCNGC 1 cut(s) 220
FokI GGATG 3 cut(s) 263, 736, 819
FriOI GRGCYC 1 cut(s) 927
Fsp4HI GCNGC 1 cut(s) 220
FspBI CTAG 3 cut(s) 84, 332, 873
GluI GCNGC 1 cut(s) 220
GsaI CCCAGC 1 cut(s) 577
GsuI CTGGAG 1 cut(s) 545
HapII CCGG 2 cut(s) 513, 790
Hin1II CATG 5 cut(s) 267, 341, 653, 712, 890
HinfI GANTC 5 cut(s) 12, 233, 436, 537, 718
HpaII CCGG 2 cut(s) 513, 790
Hpy166II GTNNAC 5 cut(s) 35, 314, 378, 475, 827
Hpy188I TCNGA 6 cut(s) 420, 444, 600, 852, 867, 879
Hpy8I GTNNAC 5 cut(s) 35, 314, 378, 475, 827
HpyAV CCTTC 1 cut(s) 809
HpyCH4III ACNGT 5 cut(s) 148, 227, 566, 686, 935
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 4 cut(s) 40, 475, 627, 728
HpyF10VI GCNNNNNNNGC 1 cut(s) 579
HpyF3I CTNAG 3 cut(s) 96, 633, 704
HpySE526I ACGT 1 cut(s) 477
Hsp92II CATG 5 cut(s) 267, 341, 653, 712, 890
Kpn2I TCCGGA 1 cut(s) 512
Kzo9I GATC 5 cut(s) 28, 166, 198, 645, 700
LmnI GCTCC 2 cut(s) 293, 595
LweI GCATC 3 cut(s) 203, 241, 755
MaeI CTAG 3 cut(s) 84, 332, 873
MaeII ACGT 1 cut(s) 477
MaeIII GTNAC 1 cut(s) 560
MalI GATC 5 cut(s) 30, 168, 200, 647, 702
MboI GATC 5 cut(s) 28, 166, 198, 645, 700
MboII GAAGA 6 cut(s) 14, 146, 242, 378, 544, 727
MhlI GDGCHC 2 cut(s) 477, 927
MluCI AATT 7 cut(s) 106, 355, 447, 481, 622, 861, 949
MlyI GAGTC 3 cut(s) 227, 430, 546
MmeI TCCRAC 2 cut(s) 228, 954
MnlI CCTC 4 cut(s) 143, 162, 173, 361
MroI TCCGGA 1 cut(s) 512
MroXI GAANNNNTTC 1 cut(s) 605
MseI TTAA 1 cut(s) 354
MspI CCGG 2 cut(s) 513, 790
MspR9I CCNGG 3 cut(s) 503, 791, 897
MvaI CCWGG 2 cut(s) 503, 897
MvnI CGCG 1 cut(s) 780
MwoI GCNNNNNNNGC 1 cut(s) 579
NciI CCSGG 1 cut(s) 791
NcoI CCATGG 1 cut(s) 649
NdeII GATC 5 cut(s) 28, 166, 198, 645, 700
NlaIII CATG 5 cut(s) 267, 341, 653, 712, 890
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 560
PaeR7I CTCGAG 1 cut(s) 401
PdmI GAANNNNTTC 1 cut(s) 605
PfeI GAWTC 2 cut(s) 12, 718
PkrI GCNGC 1 cut(s) 221
PleI GAGTC 3 cut(s) 227, 430, 545
PmaCI CACGTG 1 cut(s) 478
PmlI CACGTG 1 cut(s) 478
PpsI GAGTC 3 cut(s) 227, 430, 545
Ppu21I YACGTR 1 cut(s) 478
Psp124BI GAGCTC 1 cut(s) 927
Psp6I CCWGG 2 cut(s) 501, 895
PspCI CACGTG 1 cut(s) 478
PspFI CCCAGC 1 cut(s) 573
PspGI CCWGG 2 cut(s) 501, 895
PspN4I GGNNCC 1 cut(s) 121
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
SacI GAGCTC 1 cut(s) 927
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 1 cut(s) 220
Sau3AI GATC 5 cut(s) 28, 166, 198, 645, 700
SchI GAGTC 3 cut(s) 227, 430, 546
ScrFI CCNGG 3 cut(s) 503, 791, 897
SduI GDGCHC 2 cut(s) 477, 927
SfaNI GCATC 3 cut(s) 203, 241, 755
Sfr274I CTCGAG 1 cut(s) 401
SlaI CTCGAG 1 cut(s) 401
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
SpeI ACTAGT 2 cut(s) 83, 872
Sse9I AATT 7 cut(s) 106, 355, 447, 481, 622, 861, 949
SsiI CCGC 2 cut(s) 220, 778
SspMI CTAG 3 cut(s) 84, 332, 873
SstI GAGCTC 1 cut(s) 927
StyD4I CCNGG 3 cut(s) 501, 789, 895
StyI CCWWGG 1 cut(s) 649
TaaI ACNGT 5 cut(s) 148, 227, 566, 686, 935
TaiI ACGT 1 cut(s) 480
TaqI TCGA 5 cut(s) 135, 165, 197, 402, 485
TasI AATT 7 cut(s) 106, 355, 447, 481, 622, 861, 949
TatI WGTACW 1 cut(s) 34
TauI GCSGC 1 cut(s) 222
TfiI GAWTC 2 cut(s) 12, 718
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TscAI CASTG 2 cut(s) 195, 571
TseFI GTSAC 1 cut(s) 560
Tsp45I GTSAC 1 cut(s) 560
TspDTI ATGAA 4 cut(s) 252, 378, 503, 710
TspRI CASTG 2 cut(s) 195, 571
VneI GTGCAC 1 cut(s) 473
XapI RAATTY 3 cut(s) 106, 481, 861
XhoI CTCGAG 1 cut(s) 401
XmiI GTMKAC 1 cut(s) 826
XmnI GAANNNNTTC 1 cut(s) 605
XspI CTAG 3 cut(s) 84, 332, 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.