RLG00000033938

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000467
Physical Location & Seq
Reverse (-)
34421942 .. 34422631
690 bp
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UTR
Exon/CDS
Intron
RLM00000033938

Sequence Viewer

Length: 690 bp
ATGGGAAACTGTTTCACTCATAAAGAAAAAGCTTCAGATCGGTGGATCCGGGAGGAGGAAGAAAACAAACACCATGAACAGCGAAACAGAATCAGCGATCCCCCAGATCAGTACACTGATGCTCCGGCTGACAGAATCAGCGGTGATCTTTCAGATCGGTGGAGTGAGGAGGAAGAAAACAAGCATGAGAAGAGAAACAGTACTGGTTCATCTGACAGAATAAGTGATCTCCCAGATGATATATTGCATCTCATACTCTCATTCTTGCCTTTCAAATACGTTGGGCAAACTAGTGTCTTATCTCGAAGATGGAGTCATGTATGGTCTTCCTATCCCATCTTTGACTTCTACGAAATTTTTACTGGTAATGAAGCTGAACATCACCAGACAAGAGCAAGCATCATCAACACAGTATTGGCTCGCGATCGCCACAACAAAAACTATAAAATGATGTACCCATGCCAAAAAATTCCCTTGCCAAGAGGCAGACTAGGTCAATTTCGTATAGTTGGGAAGAATCCAAACAATTCTTGTTTGGCTAGGGTTGAGGAACTTGTACTCGATATCTCGTTGAGTAGTGCAAATACATCTAATTTGCCTCGATGTCAACTTAAGTGCCACTCATTAAGGAGTAGTAGCTGTGGGAGTTCAAAGGCATGGCTACGGTTTTCCTCTACTTATGTTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

230

Amino Acids

26.54

Weight (kDa)

8.2

Isoelectric Point (pI)

58.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 74 - 113 1.6e-10 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 423
AciI CCGC 1 cut(s) 141
AclWI GGATC 3 cut(s) 40, 53, 92
AcsI RAATTY 2 cut(s) 354, 468
AcuI CTGAAG 1 cut(s) 18
AfaI GTAC 4 cut(s) 113, 202, 455, 558
AfiI CCNNNNNNNGG 1 cut(s) 55
AflII CTTAAG 1 cut(s) 611
AgsI TTSAA 2 cut(s) 274, 651
AhlI ACTAGT 1 cut(s) 290
AluBI AGCT 3 cut(s) 32, 374, 639
AluI AGCT 3 cut(s) 32, 374, 639
AlwI GGATC 3 cut(s) 40, 53, 92
ApoI RAATTY 2 cut(s) 354, 468
ArsI GACNNNNNNTTYG 2 cut(s) 298, 330
AsiSI GCGATCGC 1 cut(s) 427
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 2 cut(s) 155, 374
BamHI GGATCC 1 cut(s) 45
BbsI GAAGAC 1 cut(s) 318
BccI CCATC 2 cut(s) 303, 344
BcnI CCSGG 1 cut(s) 50
BcuI ACTAGT 1 cut(s) 290
BfaI CTAG 4 cut(s) 291, 491, 540, 688
BfrI CTTAAG 1 cut(s) 611
BmcAI AGTACT 1 cut(s) 202
Bme1390I CCNGG 1 cut(s) 50
BmiI GGNNCC 1 cut(s) 47
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 3 cut(s) 109, 256, 408
BpiI GAAGAC 1 cut(s) 318
BpuMI CCSGG 1 cut(s) 50
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse1I ACTGG 2 cut(s) 208, 367
BseLI CCNNNNNNNGG 1 cut(s) 55
BseNI ACTGG 2 cut(s) 208, 367
BseRI GAGGAG 2 cut(s) 68, 182
Bsh1236I CGCG 1 cut(s) 423
Bsh1285I CGRYCG 1 cut(s) 427
BsiEI CGRYCG 1 cut(s) 427
BsiSI CCGG 2 cut(s) 49, 125
BslI CCNNNNNNNGG 1 cut(s) 55
Bsp143I GATC 8 cut(s) 37, 45, 97, 106, 145, 154, 226, 424
Bsp68I TCGCGA 1 cut(s) 423
BspACI CCGC 1 cut(s) 141
BspFNI CGCG 1 cut(s) 423
BspLI GGNNCC 1 cut(s) 47
BspPI GGATC 3 cut(s) 40, 53, 92
BspTI CTTAAG 1 cut(s) 611
BsrI ACTGG 2 cut(s) 208, 367
BssMI GATC 8 cut(s) 37, 45, 97, 106, 145, 154, 226, 424
Bst4CI ACNGT 4 cut(s) 11, 200, 412, 666
Bst6I CTCTTC 1 cut(s) 185
BstAFI CTTAAG 1 cut(s) 611
BstC8I GCNNGC 2 cut(s) 397, 421
BstFNI CGCG 1 cut(s) 423
BstKTI GATC 8 cut(s) 40, 48, 100, 109, 148, 157, 229, 427
BstMBI GATC 8 cut(s) 37, 45, 97, 106, 145, 154, 226, 424
BstMCI CGRYCG 1 cut(s) 427
BstSCI CCNGG 1 cut(s) 48
BstUI CGCG 1 cut(s) 423
BstV2I GAAGAC 1 cut(s) 318
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BtsIMutI CAGTG 1 cut(s) 114
BtuMI TCGCGA 1 cut(s) 423
Cac8I GCNNGC 2 cut(s) 397, 421
Csp6I GTAC 4 cut(s) 112, 201, 454, 557
CviAII CATG 5 cut(s) 74, 185, 317, 459, 657
CviJI RGCY 7 cut(s) 32, 128, 374, 419, 539, 639, 661
CviKI_1 RGCY 7 cut(s) 32, 128, 374, 419, 539, 639, 661
CviQI GTAC 4 cut(s) 112, 201, 454, 557
DpnI GATC 8 cut(s) 39, 47, 99, 108, 147, 156, 228, 426
DpnII GATC 8 cut(s) 37, 45, 97, 106, 145, 154, 226, 424
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Eco32I GATATC 1 cut(s) 565
Eco57I CTGAAG 1 cut(s) 18
EcoRV GATATC 1 cut(s) 565
FaeI CATG 5 cut(s) 77, 188, 320, 462, 660
FatI CATG 5 cut(s) 73, 184, 316, 458, 656
FspBI CTAG 4 cut(s) 291, 491, 540, 688
HapII CCGG 2 cut(s) 49, 125
Hin1II CATG 5 cut(s) 77, 188, 320, 462, 660
HincII GTYRAC 1 cut(s) 608
HindII GTYRAC 1 cut(s) 608
HindIII AAGCTT 1 cut(s) 30
HinfI GANTC 4 cut(s) 90, 135, 313, 517
HpaII CCGG 2 cut(s) 49, 125
HphI GGTGA 2 cut(s) 155, 374
Hpy166II GTNNAC 2 cut(s) 114, 608
Hpy188I TCNGA 3 cut(s) 37, 154, 214
Hpy188III TCNNGA 2 cut(s) 303, 422
Hpy8I GTNNAC 2 cut(s) 114, 608
HpyCH4III ACNGT 4 cut(s) 11, 200, 412, 666
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 2 cut(s) 247, 581
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 5 cut(s) 77, 188, 320, 462, 660
Kzo9I GATC 8 cut(s) 37, 45, 97, 106, 145, 154, 226, 424
LmnI GCTCC 1 cut(s) 127
LpnPI CCDG 7 cut(s) 62, 117, 138, 189, 246, 348, 398
LweI GCATC 3 cut(s) 109, 256, 408
MaeI CTAG 4 cut(s) 291, 491, 540, 688
MaeII ACGT 1 cut(s) 279
MalI GATC 8 cut(s) 39, 47, 99, 108, 147, 156, 228, 426
MboI GATC 8 cut(s) 37, 45, 97, 106, 145, 154, 226, 424
MboII GAAGA 6 cut(s) 71, 185, 202, 318, 318, 526
MflI RGATCY 1 cut(s) 45
MluCI AATT 5 cut(s) 354, 468, 497, 526, 592
MlyI GAGTC 1 cut(s) 322
MnlI CCTC 8 cut(s) 46, 49, 160, 163, 476, 541, 609, 682
MseI TTAA 2 cut(s) 612, 626
MspA1I CMGCKG 1 cut(s) 141
MspCI CTTAAG 1 cut(s) 611
MspI CCGG 2 cut(s) 49, 125
MspR9I CCNGG 1 cut(s) 50
MvnI CGCG 1 cut(s) 423
NciI CCSGG 1 cut(s) 50
NdeII GATC 8 cut(s) 37, 45, 97, 106, 145, 154, 226, 424
NlaIII CATG 5 cut(s) 77, 188, 320, 462, 660
NlaIV GGNNCC 1 cut(s) 47
NruI TCGCGA 1 cut(s) 423
PfeI GAWTC 3 cut(s) 90, 135, 517
PflFI GACNNNGTC 1 cut(s) 492
PfoI TCCNGGA 1 cut(s) 48
Ple19I CGATCG 1 cut(s) 427
PleI GAGTC 1 cut(s) 321
PpsI GAGTC 1 cut(s) 321
PspN4I GGNNCC 1 cut(s) 47
PsuI RGATCY 1 cut(s) 45
PsyI GACNNNGTC 1 cut(s) 492
PvuI CGATCG 1 cut(s) 427
RgaI GCGATCGC 1 cut(s) 427
RruI TCGCGA 1 cut(s) 423
RsaI GTAC 4 cut(s) 113, 202, 455, 558
RsaNI GTAC 4 cut(s) 112, 201, 454, 557
SaqAI TTAA 2 cut(s) 612, 626
Sau3AI GATC 8 cut(s) 37, 45, 97, 106, 145, 154, 226, 424
ScaI AGTACT 1 cut(s) 202
SchI GAGTC 1 cut(s) 322
ScrFI CCNGG 1 cut(s) 50
SetI ASST 5 cut(s) 34, 282, 376, 496, 641
SfaAI GCGATCGC 1 cut(s) 427
SfaNI GCATC 3 cut(s) 109, 256, 408
SgfI GCGATCGC 1 cut(s) 427
SmlI CTYRAG 1 cut(s) 611
SmoI CTYRAG 1 cut(s) 611
SpeI ACTAGT 1 cut(s) 290
Sse9I AATT 5 cut(s) 354, 468, 497, 526, 592
SsiI CCGC 1 cut(s) 141
SspMI CTAG 4 cut(s) 291, 491, 540, 688
StyD4I CCNGG 1 cut(s) 48
TaaI ACNGT 4 cut(s) 11, 200, 412, 666
TaiI ACGT 1 cut(s) 282
TaqI TCGA 3 cut(s) 304, 561, 601
TasI AATT 5 cut(s) 354, 468, 497, 526, 592
TatI WGTACW 3 cut(s) 111, 200, 556
TfiI GAWTC 3 cut(s) 90, 135, 517
Tru1I TTAA 2 cut(s) 612, 626
Tru9I TTAA 2 cut(s) 612, 626
TscAI CASTG 1 cut(s) 121
TspDTI ATGAA 3 cut(s) 90, 198, 384
TspRI CASTG 1 cut(s) 121
Tth111I GACNNNGTC 1 cut(s) 492
Vha464I CTTAAG 1 cut(s) 611
XapI RAATTY 2 cut(s) 354, 468
XspI CTAG 4 cut(s) 291, 491, 540, 688
ZrmI AGTACT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.