Rh5BG272400

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000467
Physical Location & Seq
Reverse (-)
34182862 .. 34205747
22886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG272400.1

Sequence Viewer

Length: 1221 bp
ATGGACATCTCTGGAATGAGACTAGAGAAGTTGTCTTGTGTTGAAAATTGCATCGATGGTTGGGTCAACATTTTTTCCCCCAATCTACAATACTTATATTGGGGCAATGCAATTACTGAGAAGTGTTCCATCCAGAGCTTTCCAAAGCCCAAAAGATCTTCCCTGAGTTATTCTTTTCGGTTAGGCATTACAACAACAAAGATTTTTCATAAAAGTGCTATCAATCTTCTTTGCCATTCATCCCAAGCAGAGATACTTGGTATATTTGATGACTACCTCGAGATTCTATCAGACATTTATACTGAATTTGGTGGTGTACCTTTCTCATTTTTCAAACTTGAAACCTTGAGAATTGGGTCCACAATGAAGCAAAGATATATCCCGGGAATAGCATGCCTGTTGAAGAGCTCTCCCTTACTTAACACCCTCTACTTTGAATTTTACTATTTCGAAGAAAATGGTAAGTGGAATAACATTATGTTGGATAATGGCAATTGCACTCAAGAGCAATACTGGGAAACTCAGGCTCAACATTTGCTCCCCTTTCTTAGTCACCTAAAGGATATCGGGGGATGCGACATTCAAAAGCAAGAAATCCGTGAAGCAGTGGAACTTCCACTTACACACCATGACTTATACAAACAGATTGGAATAGATCCTCCACGTGGTGTATTGCTGTATGGCCCACCTGGAACTGGTAAAACCATGCTAGCTAAGGCTGTTGCCAATCATACAACTGCTGCCTTCATTAGAGTTGTTGGTTCAGAATTTGTTCAGAAGTATTTGGGTGAGGGTCCACGAATGGTCCATGATGTTTTCCGTCTCGCCAAGGAGAATGCACCTGCCATCATCTTTATTGATGAGGTGGATGCTATTGCTACTACAAGGTTTGATGCTCAAACTGGAGCTGATAGAAAAGTTCAGCAAATTCTTATGAAGCTCCTCAATCAGATAAGAGGGGATGGTTGCTCAACCCCATGTCCCTTGCCCAACACTCTGGCATTTCAGGCTGTCGAGTTGCCAATCTTCTTGAATGATAAAAGACCCTACCGTCAACCGCGCTTGACGCCGCTATATAAACACCCCAGGGGGCTCTGGACGTTTCTCAGCCAAATCATTGTTGTTGTATCGAAGGTTGTTCTTTGGGTAAGGTTTCGGGAGCAAAGCCTTACCCCCATTTTGAATTCCTCTTCTTCGATCAGGCTTCCTTTGTACGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

406

Amino Acids

46.17

Weight (kDa)

8.46

Isoelectric Point (pI)

38.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 224 - 319 4.6e-30 ATPase family associated with various cellular activities (AAA)
AAA_2 PF07724 224 - 316 3.5e-06 AAA domain (Cdc48 subfamily)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 850
AasI GACNNNNNNGTC 1 cut(s) 1050
Acc36I ACCTGC 1 cut(s) 850
AccII CGCG 1 cut(s) 1060
AciI CCGC 2 cut(s) 1058, 1070
AclWI GGATC 1 cut(s) 650
AcsI RAATTY 5 cut(s) 305, 437, 767, 927, 1183
AcvI CACGTG 1 cut(s) 665
AcyI GRCGYC 1 cut(s) 1067
AdeI CACNNNGTG 1 cut(s) 668
AfaI GTAC 2 cut(s) 318, 1214
AfiI CCNNNNNNNGG 2 cut(s) 665, 695
AgsI TTSAA 8 cut(s) 44, 334, 341, 403, 437, 584, 1033, 1183
AjnI CCWGG 2 cut(s) 688, 1085
AluBI AGCT 5 cut(s) 138, 408, 713, 908, 940
AluI AGCT 5 cut(s) 138, 408, 713, 908, 940
Alw21I GWGCWC 1 cut(s) 410
Alw26I GTCTC 2 cut(s) 13, 827
AlwI GGATC 1 cut(s) 650
Ama87I CYCGRG 2 cut(s) 278, 382
AoxI GGCC 1 cut(s) 682
ApeKI GCWGC 1 cut(s) 740
ApoI RAATTY 5 cut(s) 305, 437, 767, 927, 1183
Asp700I GAANNNNTTC 1 cut(s) 771
AspLEI GCGC 1 cut(s) 1062
AspS9I GGNCC 4 cut(s) 357, 683, 794, 805
AsuC2I CCSGG 2 cut(s) 383, 384
AsuHPI GGTGA 2 cut(s) 545, 800
AsuII TTCGAA 1 cut(s) 450
AsuNHI GCTAGC 1 cut(s) 709
AvaI CYCGRG 2 cut(s) 278, 382
AvaII GGWCC 3 cut(s) 357, 794, 805
BanII GRGCYC 2 cut(s) 410, 1095
BbrPI CACGTG 1 cut(s) 665
Bbv12I GWGCWC 1 cut(s) 410
BbvI GCAGC 1 cut(s) 727
BccI CCATC 4 cut(s) 50, 137, 854, 956
BciT130I CCWGG 2 cut(s) 690, 1087
BcnI CCSGG 2 cut(s) 383, 384
BcoDI GTCTC 2 cut(s) 13, 827
BfaI CTAG 2 cut(s) 23, 710
BfuAI ACCTGC 1 cut(s) 850
BglII AGATCT 1 cut(s) 155
BisI GCNGC 2 cut(s) 741, 1070
BlsI GCNGC 2 cut(s) 742, 1071
Bme1390I CCNGG 4 cut(s) 383, 384, 690, 1087
Bme18I GGWCC 3 cut(s) 357, 794, 805
BmeT110I CYCGRG 2 cut(s) 278, 382
BmgT120I GGNCC 4 cut(s) 357, 683, 794, 805
BmiI GGNNCC 2 cut(s) 358, 795
BmrFI CCNGG 4 cut(s) 383, 384, 690, 1087
BmrI ACTGGG 1 cut(s) 523
BmsI GCATC 4 cut(s) 60, 563, 859, 883
BmtI GCTAGC 1 cut(s) 713
BmuI ACTGGG 1 cut(s) 523
BpmI CTGGAG 1 cut(s) 924
Bpu10I CCTNAGC 1 cut(s) 714
Bpu14I TTCGAA 1 cut(s) 450
BpuEI CTTGAG 2 cut(s) 367, 486
BpuMI CCSGG 2 cut(s) 383, 384
Bsa29I ATCGAT 1 cut(s) 54
BsaAI YACGTR 1 cut(s) 665
BsaHI GRCGYC 1 cut(s) 1067
BsaJI CCNNGG 4 cut(s) 382, 828, 1085, 1086
BsaXI ACNNNNNCTCC 2 cut(s) 522, 552
Bsc4I CCNNNNNNNGG 2 cut(s) 665, 695
Bse1I ACTGG 3 cut(s) 518, 700, 907
Bse3DI GCAATG 1 cut(s) 112
BseBI CCWGG 2 cut(s) 690, 1087
BseCI ATCGAT 1 cut(s) 54
BseDI CCNNGG 4 cut(s) 382, 828, 1085, 1086
BseGI GGATG 5 cut(s) 129, 239, 578, 874, 967
BseLI CCNNNNNNNGG 2 cut(s) 665, 695
BseMI GCAATG 1 cut(s) 112
BseMII CTCAG 4 cut(s) 108, 155, 536, 1120
BseNI ACTGG 3 cut(s) 518, 700, 907
BseRI GAGGAG 1 cut(s) 932
BseXI GCAGC 1 cut(s) 727
Bsh1236I CGCG 1 cut(s) 1060
BshFI GGCC 1 cut(s) 684
BshVI ATCGAT 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 410
BsiHKCI CYCGRG 2 cut(s) 278, 382
BsiSI CCGG 1 cut(s) 383
BslFI GGGAC 1 cut(s) 966
BslI CCNNNNNNNGG 2 cut(s) 665, 695
BsmAI GTCTC 2 cut(s) 13, 827
BsmBI CGTCTC 1 cut(s) 827
BsmFI GGGAC 1 cut(s) 966
BsmI GAATGC 1 cut(s) 841
BsnI GGCC 1 cut(s) 684
BsoBI CYCGRG 2 cut(s) 278, 382
Bsp119I TTCGAA 1 cut(s) 450
Bsp1286I GDGCHC 2 cut(s) 410, 1095
Bsp143I GATC 3 cut(s) 155, 655, 1197
BspACI CCGC 2 cut(s) 1058, 1070
BspANI GGCC 1 cut(s) 684
BspCNI CTCAG 4 cut(s) 109, 156, 535, 1119
BspDI ATCGAT 1 cut(s) 54
BspFNI CGCG 1 cut(s) 1060
BspLI GGNNCC 2 cut(s) 358, 795
BspMI ACCTGC 1 cut(s) 850
BspOI GCTAGC 1 cut(s) 713
BspPI GGATC 1 cut(s) 650
BspQI GCTCTTC 1 cut(s) 398
BspT104I TTCGAA 1 cut(s) 450
BsrDI GCAATG 1 cut(s) 112
BsrI ACTGG 3 cut(s) 518, 700, 907
BssECI CCNNGG 4 cut(s) 382, 828, 1085, 1086
BssMI GATC 3 cut(s) 155, 655, 1197
BssNI GRCGYC 1 cut(s) 1067
BssT1I CCWWGG 1 cut(s) 828
Bst2UI CCWGG 2 cut(s) 690, 1087
Bst4CI ACNGT 1 cut(s) 1052
Bst6I CTCTTC 2 cut(s) 398, 1195
BstACI GRCGYC 1 cut(s) 1067
BstBAI YACGTR 1 cut(s) 665
BstBI TTCGAA 1 cut(s) 450
BstC8I GCNNGC 2 cut(s) 394, 711
BstDEI CTNAG 6 cut(s) 117, 164, 522, 548, 714, 1106
BstF5I GGATG 5 cut(s) 129, 239, 578, 874, 967
BstFNI CGCG 1 cut(s) 1060
BstHHI GCGC 1 cut(s) 1062
BstKTI GATC 3 cut(s) 158, 658, 1200
BstMAI GTCTC 2 cut(s) 13, 827
BstMBI GATC 3 cut(s) 155, 655, 1197
BstMWI GCNNNNNNNGC 2 cut(s) 1007, 1066
BstNI CCWGG 2 cut(s) 690, 1087
BstNSI RCATGY 1 cut(s) 396
BstSCI CCNGG 4 cut(s) 381, 382, 688, 1085
BstUI CGCG 1 cut(s) 1060
BstV1I GCAGC 1 cut(s) 727
BstX2I RGATCY 2 cut(s) 155, 655
BstXI CCANNNNNNTGG 1 cut(s) 997
BstYI RGATCY 2 cut(s) 155, 655
Bsu15I ATCGAT 1 cut(s) 54
BsuRI GGCC 1 cut(s) 684
BsuTUI ATCGAT 1 cut(s) 54
BtsCI GGATG 5 cut(s) 129, 239, 578, 874, 967
BtsI GCAGTG 1 cut(s) 612
BtsIMutI CAGTG 1 cut(s) 612
BveI ACCTGC 1 cut(s) 850
Cac8I GCNNGC 2 cut(s) 394, 711
CfoI GCGC 1 cut(s) 1062
Cfr13I GGNCC 4 cut(s) 357, 683, 794, 805
Cfr9I CCCGGG 1 cut(s) 382
ClaI ATCGAT 1 cut(s) 54
CseI GACGC 1 cut(s) 1075
Csp6I GTAC 2 cut(s) 317, 1213
CviAII CATG 5 cut(s) 393, 629, 706, 809, 978
CviQI GTAC 2 cut(s) 317, 1213
DdeI CTNAG 6 cut(s) 117, 164, 522, 548, 714, 1106
DpnI GATC 3 cut(s) 157, 657, 1199
DpnII GATC 3 cut(s) 155, 655, 1197
DraIII CACNNNGTG 1 cut(s) 668
DrdI GACNNNNNNGTC 1 cut(s) 1050
DseDI GACNNNNNNGTC 1 cut(s) 1050
Eam1104I CTCTTC 2 cut(s) 398, 1195
EarI CTCTTC 2 cut(s) 398, 1195
Ecl136II GAGCTC 1 cut(s) 408
Eco130I CCWWGG 1 cut(s) 828
Eco24I GRGCYC 2 cut(s) 410, 1095
Eco32I GATATC 1 cut(s) 565
Eco47I GGWCC 3 cut(s) 357, 794, 805
Eco53kI GAGCTC 1 cut(s) 408
Eco72I CACGTG 1 cut(s) 665
Eco88I CYCGRG 2 cut(s) 278, 382
EcoICRI GAGCTC 1 cut(s) 408
EcoRI GAATTC 1 cut(s) 1183
EcoRII CCWGG 2 cut(s) 688, 1085
EcoRV GATATC 1 cut(s) 565
EcoT14I CCWWGG 1 cut(s) 828
EcoT38I GRGCYC 2 cut(s) 410, 1095
ErhI CCWWGG 1 cut(s) 828
Esp3I CGTCTC 1 cut(s) 827
FaeI CATG 5 cut(s) 396, 632, 709, 812, 981
FaqI GGGAC 1 cut(s) 966
FatI CATG 5 cut(s) 392, 628, 705, 808, 977
Fnu4HI GCNGC 2 cut(s) 741, 1070
FokI GGATG 5 cut(s) 116, 226, 585, 881, 974
FriOI GRGCYC 2 cut(s) 410, 1095
Fsp4HI GCNGC 2 cut(s) 741, 1070
FspBI CTAG 2 cut(s) 23, 710
GlaI GCGC 1 cut(s) 1061
GluI GCNGC 2 cut(s) 741, 1070
GsuI CTGGAG 1 cut(s) 924
HaeIII GGCC 1 cut(s) 684
HapII CCGG 1 cut(s) 383
HgaI GACGC 1 cut(s) 1075
HhaI GCGC 1 cut(s) 1062
Hin1I GRCGYC 1 cut(s) 1067
Hin1II CATG 5 cut(s) 396, 632, 709, 812, 981
Hin6I GCGC 1 cut(s) 1060
HinP1I GCGC 1 cut(s) 1060
HincII GTYRAC 2 cut(s) 67, 1055
HindII GTYRAC 2 cut(s) 67, 1055
HinfI GANTC 1 cut(s) 283
HpaII CCGG 1 cut(s) 383
HphI GGTGA 2 cut(s) 545, 800
Hpy166II GTNNAC 5 cut(s) 67, 317, 360, 797, 1055
Hpy188I TCNGA 4 cut(s) 292, 766, 777, 951
Hpy188III TCNNGA 7 cut(s) 12, 133, 280, 503, 1030, 1096, 1157
Hpy8I GTNNAC 5 cut(s) 67, 317, 360, 797, 1055
HpyAV CCTTC 2 cut(s) 754, 1126
HpyCH4III ACNGT 1 cut(s) 1052
HpyCH4IV ACGT 3 cut(s) 664, 1100, 1215
HpyCH4V TGCA 4 cut(s) 51, 110, 498, 839
HpyF10VI GCNNNNNNNGC 2 cut(s) 1007, 1066
HpyF3I CTNAG 6 cut(s) 117, 164, 522, 548, 714, 1106
HpySE526I ACGT 3 cut(s) 664, 1100, 1215
Hsp92I GRCGYC 1 cut(s) 1067
Hsp92II CATG 5 cut(s) 396, 632, 709, 812, 981
HspAI GCGC 1 cut(s) 1060
Kzo9I GATC 3 cut(s) 155, 655, 1197
LguI GCTCTTC 1 cut(s) 398
LmnI GCTCC 4 cut(s) 543, 905, 945, 1159
Lsp1109I GCAGC 1 cut(s) 727
LweI GCATC 4 cut(s) 60, 563, 859, 883
MaeI CTAG 2 cut(s) 23, 710
MaeII ACGT 3 cut(s) 664, 1100, 1215
MaeIII GTNAC 1 cut(s) 551
MalI GATC 3 cut(s) 157, 657, 1199
MboI GATC 3 cut(s) 155, 655, 1197
MboII GAAGA 7 cut(s) 150, 218, 415, 464, 1018, 1182, 1185
MfeI CAATTG 1 cut(s) 493
MflI RGATCY 2 cut(s) 155, 655
MhlI GDGCHC 2 cut(s) 410, 1095
MluCI AATT 9 cut(s) 46, 111, 305, 351, 437, 493, 767, 927, 1183
MmeI TCCRAC 1 cut(s) 462
MnlI CCTC 8 cut(s) 287, 437, 669, 784, 856, 950, 953, 1198
MroXI GAANNNNTTC 1 cut(s) 771
MseI TTAA 1 cut(s) 420
MslI CAYNNNNRTG 1 cut(s) 213
MspI CCGG 1 cut(s) 383
MspR9I CCNGG 4 cut(s) 383, 384, 690, 1087
MunI CAATTG 1 cut(s) 493
Mva1269I GAATGC 1 cut(s) 841
MvaI CCWGG 2 cut(s) 690, 1087
MvnI CGCG 1 cut(s) 1060
MwoI GCNNNNNNNGC 2 cut(s) 1007, 1066
NciI CCSGG 2 cut(s) 383, 384
NdeII GATC 3 cut(s) 155, 655, 1197
NheI GCTAGC 1 cut(s) 709
NlaIII CATG 5 cut(s) 396, 632, 709, 812, 981
NlaIV GGNNCC 2 cut(s) 358, 795
NmuCI GTSAC 1 cut(s) 551
NspI RCATGY 1 cut(s) 396
NspV TTCGAA 1 cut(s) 450
PaeI GCATGC 1 cut(s) 396
PaeR7I CTCGAG 1 cut(s) 278
PaqCI CACCTGC 1 cut(s) 850
PasI CCCWGGG 1 cut(s) 1086
PciSI GCTCTTC 1 cut(s) 398
PcsI WCGNNNNNNNCGW 1 cut(s) 573
PctI GAATGC 1 cut(s) 841
PdmI GAANNNNTTC 1 cut(s) 771
PfeI GAWTC 1 cut(s) 283
PkrI GCNGC 2 cut(s) 742, 1071
PmaCI CACGTG 1 cut(s) 665
PmlI CACGTG 1 cut(s) 665
Ppu21I YACGTR 1 cut(s) 665
Psp124BI GAGCTC 1 cut(s) 410
Psp6I CCWGG 2 cut(s) 688, 1085
PspCI CACGTG 1 cut(s) 665
PspGI CCWGG 2 cut(s) 688, 1085
PspN4I GGNNCC 2 cut(s) 358, 795
PspPI GGNCC 4 cut(s) 357, 683, 794, 805
PsuI RGATCY 2 cut(s) 155, 655
RsaI GTAC 2 cut(s) 318, 1214
RsaNI GTAC 2 cut(s) 317, 1213
RseI CAYNNNNRTG 1 cut(s) 213
SacI GAGCTC 1 cut(s) 410
SapI GCTCTTC 1 cut(s) 398
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 2 cut(s) 741, 1070
Sau3AI GATC 3 cut(s) 155, 655, 1197
Sau96I GGNCC 4 cut(s) 357, 683, 794, 805
ScrFI CCNGG 4 cut(s) 383, 384, 690, 1087
SduI GDGCHC 2 cut(s) 410, 1095
SfaNI GCATC 4 cut(s) 60, 563, 859, 883
Sfr274I CTCGAG 1 cut(s) 278
SfuI TTCGAA 1 cut(s) 450
SinI GGWCC 3 cut(s) 357, 794, 805
SlaI CTCGAG 1 cut(s) 278
SmaI CCCGGG 1 cut(s) 384
SmiMI CAYNNNNRTG 1 cut(s) 213
SmlI CTYRAG 3 cut(s) 278, 346, 501
SmoI CTYRAG 3 cut(s) 278, 346, 501
SphI GCATGC 1 cut(s) 396
Sse9I AATT 9 cut(s) 46, 111, 305, 351, 437, 493, 767, 927, 1183
SsiI CCGC 2 cut(s) 1058, 1070
SspMI CTAG 2 cut(s) 23, 710
SstI GAGCTC 1 cut(s) 410
StyD4I CCNGG 4 cut(s) 381, 382, 688, 1085
StyI CCWWGG 1 cut(s) 828
TaaI ACNGT 1 cut(s) 1052
TaiI ACGT 3 cut(s) 667, 1103, 1218
TaqI TCGA 6 cut(s) 54, 279, 450, 1014, 1130, 1196
TasI AATT 9 cut(s) 46, 111, 305, 351, 437, 493, 767, 927, 1183
TauI GCSGC 1 cut(s) 1072
TfiI GAWTC 1 cut(s) 283
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TscAI CASTG 1 cut(s) 612
TseFI GTSAC 1 cut(s) 551
TseI GCWGC 1 cut(s) 740
Tsp45I GTSAC 1 cut(s) 551
TspDTI ATGAA 5 cut(s) 197, 228, 380, 736, 950
TspGWI ACGGA 2 cut(s) 587, 809
TspMI CCCGGG 1 cut(s) 382
TspRI CASTG 1 cut(s) 612
VpaK11BI GGWCC 3 cut(s) 357, 794, 805
XapI RAATTY 5 cut(s) 305, 437, 767, 927, 1183
XceI RCATGY 1 cut(s) 396
XhoI CTCGAG 1 cut(s) 278
XmaI CCCGGG 1 cut(s) 382
XmnI GAANNNNTTC 1 cut(s) 771
XspI CTAG 2 cut(s) 23, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.