Rh2AG270500

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000467
Physical Location & Seq
Forward (+)
32182144 .. 32188139
5996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG270500.1

Sequence Viewer

Length: 879 bp
ATGTTTTCTCATATTAAAACGATTTTGAGACGTATTAAATTTAAACCTTGCCGTGGGAAAACTTGTAAACAAAGAGTGGCCGGTTCTTCAGCTGACAGAATCAGTGATCTCCCAGATGATATATTGCATGTCATACTCTCATTCTTACCTTTCAAATCCGTTGGGCAAACAGCTATCTTATCTCGAAGATGGAATGATGTTTGGTCTTCCTATCCCATCATCGACTTCTACGAGATTTTTACTGGTAGTGAAGCTGATCATCACCAGACAAAAACGAGGATCATCAACACAATATTAGCTCGCCATGAAGAAAACTATAATATACTGTACCCATGCCGCAAAATTTCCTTGCCAAGAGTTGGGGGGGTTCCGAACAAATCTTGTTTGTCTAGGGTTGAGGAACTTGTACTCGACATCAGGTTGAGTTCTGGAAACACATCTGATTTGCCTCAATGTCAACTCATGTGCCACTCATTAAGGAGTAGTAGCTGTGGGAATTCAAAGGCATGGCTAGGGTTTCCCTGGTCTTATGTTGTCGGGTCTTATCTCCTTTCACTTCATACTTTGTCTCTAACTCGTGTGGATTTCTTGGATAGTAGTGCTTTGGGTGTGGATTTATTTGCTGGTTCTTCATTCCCTTATCTCGAAAAGTTGAACTTAGAGCGCTGTAGAGGGAGGAGTGATCTCAAAATTTGCTGTCCAAACCTAAAACATGTAGAGGTATTTGATATGGAATTAAATAGTCTGGACATCTCCGGAATGAGACTGGAGGAGTTGCGAGTCTGGTTTTGTTTTCAAGAGTATATCAATGGAAGTTGGGTCAACATTTGTTGCACCGAATCTACAATCATTCTCTTGGGGTTATTCAGGCATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

292

Amino Acids

33.37

Weight (kDa)

8.54

Isoelectric Point (pI)

50.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 34 - 72 8.6e-10 F-box domain
F-box-like PF12937 34 - 67 3.6e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 359
AccIII TCCGGA 1 cut(s) 755
AciI CCGC 1 cut(s) 337
AclWI GGATC 1 cut(s) 287
AcoI YGGCCR 1 cut(s) 78
AcsI RAATTY 4 cut(s) 38, 342, 496, 690
AcuI CTGAAG 1 cut(s) 72
AfaI GTAC 2 cut(s) 329, 408
AfeI AGCGCT 1 cut(s) 665
AfiI CCNNNNNNNGG 2 cut(s) 53, 359
AflIII ACRYGT 1 cut(s) 712
AgsI TTSAA 4 cut(s) 154, 501, 655, 797
AjnI CCWGG 1 cut(s) 521
AluBI AGCT 5 cut(s) 92, 173, 254, 299, 489
AluI AGCT 5 cut(s) 92, 173, 254, 299, 489
Alw26I GTCTC 3 cut(s) 22, 573, 757
AlwI GGATC 1 cut(s) 287
Aor13HI TCCGGA 1 cut(s) 755
Aor51HI AGCGCT 1 cut(s) 665
AoxI GGCC 1 cut(s) 78
ApoI RAATTY 4 cut(s) 38, 342, 496, 690
AspLEI GCGC 1 cut(s) 666
AsuHPI GGTGA 1 cut(s) 254
BauI CACGAG 1 cut(s) 576
BbsI GAAGAC 1 cut(s) 198
BccI CCATC 2 cut(s) 183, 224
BceAI ACGGC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 523
BclI TGATCA 1 cut(s) 256
BcoDI GTCTC 3 cut(s) 22, 573, 757
BfaI CTAG 2 cut(s) 390, 512
BfmI CTRYAG 1 cut(s) 667
BfoI RGCGCY 1 cut(s) 667
BisI GCNGC 1 cut(s) 337
BlsI GCNGC 1 cut(s) 338
Bme1390I CCNGG 1 cut(s) 523
BmiI GGNNCC 1 cut(s) 369
BmrFI CCNGG 1 cut(s) 523
BpiI GAAGAC 1 cut(s) 198
BpmI CTGGAG 1 cut(s) 788
BsaJI CCNNGG 2 cut(s) 52, 521
BsaWI WCCGGW 1 cut(s) 755
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 359
Bse118I RCCGGY 1 cut(s) 80
Bse1I ACTGG 2 cut(s) 247, 771
BseAI TCCGGA 1 cut(s) 755
BseBI CCWGG 1 cut(s) 523
BseDI CCNNGG 2 cut(s) 52, 521
BseLI CCNNNNNNNGG 2 cut(s) 53, 359
BseNI ACTGG 2 cut(s) 247, 771
BseRI GAGGAG 2 cut(s) 691, 785
BshFI GGCC 1 cut(s) 80
BsiSI CCGG 2 cut(s) 81, 756
BslI CCNNNNNNNGG 2 cut(s) 53, 359
BsmAI GTCTC 3 cut(s) 22, 573, 757
BsmBI CGTCTC 1 cut(s) 22
BsnI GGCC 1 cut(s) 80
Bsp13I TCCGGA 1 cut(s) 755
Bsp143I GATC 4 cut(s) 106, 256, 279, 682
BspACI CCGC 1 cut(s) 337
BspANI GGCC 1 cut(s) 80
BspEI TCCGGA 1 cut(s) 755
BspLI GGNNCC 1 cut(s) 369
BspPI GGATC 1 cut(s) 287
BsrFI RCCGGY 1 cut(s) 80
BsrI ACTGG 2 cut(s) 247, 771
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 2 cut(s) 52, 521
BssMI GATC 4 cut(s) 106, 256, 279, 682
BssSI CACGAG 1 cut(s) 576
Bst2BI CACGAG 1 cut(s) 576
Bst2UI CCWGG 1 cut(s) 523
Bst4CI ACNGT 1 cut(s) 327
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 1 cut(s) 658
BstDSI CCRYGG 1 cut(s) 52
BstH2I RGCGCY 1 cut(s) 667
BstHHI GCGC 1 cut(s) 666
BstKTI GATC 4 cut(s) 109, 259, 282, 685
BstMAI GTCTC 3 cut(s) 22, 573, 757
BstMBI GATC 4 cut(s) 106, 256, 279, 682
BstNI CCWGG 1 cut(s) 523
BstNSI RCATGY 2 cut(s) 131, 716
BstSCI CCNGG 1 cut(s) 521
BstSFI CTRYAG 1 cut(s) 667
BstV2I GAAGAC 1 cut(s) 198
BsuRI GGCC 1 cut(s) 80
BtgI CCRYGG 1 cut(s) 52
BtsIMutI CAGTG 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 301
CfoI GCGC 1 cut(s) 666
Cfr10I RCCGGY 1 cut(s) 80
Csp6I GTAC 2 cut(s) 328, 407
CviAII CATG 6 cut(s) 128, 305, 333, 463, 507, 713
CviJI RGCY 7 cut(s) 80, 92, 173, 254, 299, 489, 511
CviKI_1 RGCY 7 cut(s) 80, 92, 173, 254, 299, 489, 511
CviQI GTAC 2 cut(s) 328, 407
DdeI CTNAG 1 cut(s) 658
DpnI GATC 4 cut(s) 108, 258, 281, 684
DpnII GATC 4 cut(s) 106, 256, 279, 682
DraI TTTAAA 1 cut(s) 43
EaeI YGGCCR 1 cut(s) 78
Eco47III AGCGCT 1 cut(s) 665
Eco57I CTGAAG 1 cut(s) 72
EcoRI GAATTC 1 cut(s) 496
EcoRII CCWGG 1 cut(s) 521
Esp3I CGTCTC 1 cut(s) 22
FaeI CATG 6 cut(s) 131, 308, 336, 466, 510, 716
FalI AAGNNNNNCTT 2 cut(s) 641, 673
FatI CATG 6 cut(s) 127, 304, 332, 462, 506, 712
FbaI TGATCA 1 cut(s) 256
Fnu4HI GCNGC 1 cut(s) 337
Fsp4HI GCNGC 1 cut(s) 337
FspBI CTAG 2 cut(s) 390, 512
GlaI GCGC 1 cut(s) 665
GluI GCNGC 1 cut(s) 337
GsuI CTGGAG 1 cut(s) 788
HaeII RGCGCY 1 cut(s) 667
HaeIII GGCC 1 cut(s) 80
HapII CCGG 2 cut(s) 81, 756
HhaI GCGC 1 cut(s) 666
Hin1II CATG 6 cut(s) 131, 308, 336, 466, 510, 716
Hin6I GCGC 1 cut(s) 664
HinP1I GCGC 1 cut(s) 664
HincII GTYRAC 2 cut(s) 458, 823
HindII GTYRAC 2 cut(s) 458, 823
HinfI GANTC 3 cut(s) 99, 780, 839
HpaII CCGG 2 cut(s) 81, 756
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 3 cut(s) 68, 458, 823
Hpy188I TCNGA 2 cut(s) 372, 442
Hpy188III TCNNGA 6 cut(s) 183, 429, 644, 746, 756, 797
Hpy8I GTNNAC 3 cut(s) 68, 458, 823
HpyCH4III ACNGT 1 cut(s) 327
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 2 cut(s) 127, 834
HpyF3I CTNAG 1 cut(s) 658
HpySE526I ACGT 1 cut(s) 31
Hsp92II CATG 6 cut(s) 131, 308, 336, 466, 510, 716
HspAI GCGC 1 cut(s) 664
Kpn2I TCCGGA 1 cut(s) 755
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 4 cut(s) 106, 256, 279, 682
MaeI CTAG 2 cut(s) 390, 512
MaeII ACGT 1 cut(s) 31
MalI GATC 4 cut(s) 108, 258, 281, 684
MboI GATC 4 cut(s) 106, 256, 279, 682
MboII GAAGA 5 cut(s) 78, 198, 198, 320, 621
MluCI AATT 5 cut(s) 38, 342, 496, 690, 734
MlyI GAGTC 1 cut(s) 789
MnlI CCTC 7 cut(s) 270, 391, 459, 665, 669, 712, 763
MroI TCCGGA 1 cut(s) 755
MseI TTAA 5 cut(s) 15, 36, 42, 476, 737
MspA1I CMGCKG 1 cut(s) 92
MspI CCGG 2 cut(s) 81, 756
MspR9I CCNGG 1 cut(s) 523
MvaI CCWGG 1 cut(s) 523
NdeII GATC 4 cut(s) 106, 256, 279, 682
NlaIII CATG 6 cut(s) 131, 308, 336, 466, 510, 716
NlaIV GGNNCC 1 cut(s) 369
NspI RCATGY 2 cut(s) 131, 716
PciI ACATGT 1 cut(s) 712
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PfeI GAWTC 2 cut(s) 99, 839
PflMI CCANNNNNTGG 1 cut(s) 359
PkrI GCNGC 1 cut(s) 338
PleI GAGTC 1 cut(s) 788
PpsI GAGTC 1 cut(s) 788
PscI ACATGT 1 cut(s) 712
Psp6I CCWGG 1 cut(s) 521
PspGI CCWGG 1 cut(s) 521
PspN4I GGNNCC 1 cut(s) 369
PvuII CAGCTG 1 cut(s) 92
RsaI GTAC 2 cut(s) 329, 408
RsaNI GTAC 2 cut(s) 328, 407
SaqAI TTAA 5 cut(s) 15, 36, 42, 476, 737
SatI GCNGC 1 cut(s) 337
Sau3AI GATC 4 cut(s) 106, 256, 279, 682
SchI GAGTC 1 cut(s) 789
ScrFI CCNGG 1 cut(s) 523
SfcI CTRYAG 1 cut(s) 667
Sse9I AATT 5 cut(s) 38, 342, 496, 690, 734
SsiI CCGC 1 cut(s) 337
SspI AATATT 1 cut(s) 294
SspMI CTAG 2 cut(s) 390, 512
StyD4I CCNGG 1 cut(s) 521
TaaI ACNGT 1 cut(s) 327
TaiI ACGT 1 cut(s) 34
TaqI TCGA 4 cut(s) 184, 222, 411, 645
TasI AATT 5 cut(s) 38, 342, 496, 690, 734
TatI WGTACW 1 cut(s) 406
TauI GCSGC 1 cut(s) 339
TfiI GAWTC 2 cut(s) 99, 839
Tru1I TTAA 5 cut(s) 15, 36, 42, 476, 737
Tru9I TTAA 5 cut(s) 15, 36, 42, 476, 737
TscAI CASTG 1 cut(s) 109
TspDTI ATGAA 3 cut(s) 321, 548, 621
TspGWI ACGGA 1 cut(s) 148
TspRI CASTG 1 cut(s) 109
Van91I CCANNNNNTGG 1 cut(s) 359
XapI RAATTY 4 cut(s) 38, 342, 496, 690
XceI RCATGY 2 cut(s) 131, 716
XspI CTAG 2 cut(s) 390, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.