Rh2AG562900

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000467
Physical Location & Seq
Forward (+)
79232208 .. 79233497
1290 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG562900.1

Sequence Viewer

Length: 861 bp
ATGTATGGTCTTCCTATCCTATCATCGACTTCTACGAGATCTTTACTGGTGATGAAGCTTTTCATCACCAGACAAAAGAAAGGATCATCAACAGTGTTGGCTCCCCGCAACGAAAACTATAGTATAAAGATTTCTCCAATTCCGGGGGATCCGAACCGGTCTTGTTCTTTGTCTAGGGTTGAACACCTTGTACTCGACGTCTCGTTAAGCAGTGAAAACAGATCATTTGAATTGCCTCGATGTCAACTTAAGTGCCACTCATTACGGAGGCTCGAGTCTAATAACAGTAGATGTGGGAGTTCATGGCTAGGGTTTCCCTCTTCTTACGTTGTTGGGTCTTATCTCCGCTCACTTCACACATTGTCTCTAACATGTGTTGATAGTGCTTTGGTTATGGATTTTTTCTCCGGTTCTTCATTCCCTTCTCTTGAACAATTGAAGATAGAAAGTTGCAGAGGAACGAGTGATCTCAAAATTAGTTGTCCGAACCTAAGAGATGTACGAGTTTTCGATATGGATTTAAATAGCTTAGACATCTCCGGAATGAGACTAAAATTTTTGAATGTCTGGTGGTGTTTCAAGGAGTGCGTCAATGGAAGTTGGGTGAAAATCCTTGCCCCTAATCTACAATTTATTACTTGGGGCTATAATGCCATTACTGAAAACTGTTCAATCCAGAGCTTTCCTAGGCTCAAAAGATCTTTCATGTGGTCTCGGAATAGAGGTCCCATTACAAAGACGAAGATTAATAATAATGGTGTTGTCGATCTTCTTTCTGGTTCACCTCAAGTTGAAGTTCTTACCATATCCTATAAGTCTATAACTACCTACAGGTTAATTTTCCTATCTGTACAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

286

Amino Acids

32.33

Weight (kDa)

9.52

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 201
AccBSI CCGCTC 1 cut(s) 348
AccIII TCCGGA 1 cut(s) 539
AciI CCGC 2 cut(s) 106, 346
AclWI GGATC 3 cut(s) 91, 143, 156
AcsI RAATTY 1 cut(s) 554
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 3 cut(s) 192, 501, 852
AfiI CCNNNNNNNGG 1 cut(s) 143
AflII CTTAAG 1 cut(s) 248
AflIII ACRYGT 1 cut(s) 371
AgeI ACCGGT 1 cut(s) 156
AgsI TTSAA 8 cut(s) 182, 230, 431, 439, 562, 580, 672, 794
AluBI AGCT 3 cut(s) 58, 528, 681
AluI AGCT 3 cut(s) 58, 528, 681
Alw26I GTCTC 4 cut(s) 205, 369, 541, 717
AlwI GGATC 3 cut(s) 91, 143, 156
Ama87I CYCGRG 1 cut(s) 272
Aor13HI TCCGGA 1 cut(s) 539
ApoI RAATTY 1 cut(s) 554
AseI ATTAAT 1 cut(s) 747
AsiGI ACCGGT 1 cut(s) 156
Asp700I GAANNNNTTC 1 cut(s) 59
AspA2I CCTAGG 1 cut(s) 686
AspS9I GGNCC 1 cut(s) 725
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 4 cut(s) 58, 61, 616, 774
AvaI CYCGRG 1 cut(s) 272
AvaII GGWCC 1 cut(s) 725
AvrII CCTAGG 1 cut(s) 686
BamHI GGATCC 1 cut(s) 148
BbsI GAAGAC 1 cut(s) 2
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 4 cut(s) 205, 369, 541, 717
BfaI CTAG 3 cut(s) 174, 308, 687
BfmI CTRYAG 2 cut(s) 118, 829
BfrI CTTAAG 1 cut(s) 248
BglII AGATCT 2 cut(s) 38, 698
BlnI CCTAGG 1 cut(s) 686
Bme1390I CCNGG 1 cut(s) 144
Bme18I GGWCC 1 cut(s) 725
BmeT110I CYCGRG 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 725
BmiI GGNNCC 3 cut(s) 102, 150, 727
BmrFI CCNGG 1 cut(s) 144
BpiI GAAGAC 1 cut(s) 2
BpuEI CTTGAG 1 cut(s) 771
BpuMI CCSGG 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 198
BsaI GGTCTC 1 cut(s) 717
BsaJI CCNNGG 2 cut(s) 143, 686
BsaWI WCCGGW 3 cut(s) 156, 407, 539
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse118I RCCGGY 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 51
BseAI TCCGGA 1 cut(s) 539
BseDI CCNNGG 2 cut(s) 143, 686
BseLI CCNNNNNNNGG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 51
BshTI ACCGGT 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 272
BsiSI CCGG 4 cut(s) 143, 157, 408, 540
BslFI GGGAC 1 cut(s) 711
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 4 cut(s) 205, 369, 541, 717
BsmBI CGTCTC 1 cut(s) 205
BsmFI GGGAC 1 cut(s) 711
Bso31I GGTCTC 1 cut(s) 717
BsoBI CYCGRG 1 cut(s) 272
Bsp13I TCCGGA 1 cut(s) 539
Bsp1407I TGTACA 1 cut(s) 850
Bsp143I GATC 7 cut(s) 38, 83, 148, 221, 466, 698, 766
BspACI CCGC 2 cut(s) 106, 346
BspEI TCCGGA 1 cut(s) 539
BspLI GGNNCC 3 cut(s) 102, 150, 727
BspPI GGATC 3 cut(s) 91, 143, 156
BspTI CTTAAG 1 cut(s) 248
BspTNI GGTCTC 1 cut(s) 717
BsrBI CCGCTC 1 cut(s) 348
BsrFI RCCGGY 1 cut(s) 156
BsrGI TGTACA 1 cut(s) 850
BsrI ACTGG 1 cut(s) 51
BssAI RCCGGY 1 cut(s) 156
BssECI CCNNGG 2 cut(s) 143, 686
BssMI GATC 7 cut(s) 38, 83, 148, 221, 466, 698, 766
BssNI GRCGYC 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 686
Bst4CI ACNGT 3 cut(s) 94, 287, 668
Bst6I CTCTTC 1 cut(s) 325
BstACI GRCGYC 1 cut(s) 198
BstAFI CTTAAG 1 cut(s) 248
BstAUI TGTACA 1 cut(s) 850
BstDEI CTNAG 2 cut(s) 491, 529
BstKTI GATC 7 cut(s) 41, 86, 151, 224, 469, 701, 769
BstMAI GTCTC 4 cut(s) 205, 369, 541, 717
BstMBI GATC 7 cut(s) 38, 83, 148, 221, 466, 698, 766
BstNSI RCATGY 1 cut(s) 375
BstSCI CCNGG 1 cut(s) 142
BstSFI CTRYAG 2 cut(s) 118, 829
BstV2I GAAGAC 1 cut(s) 2
BstX2I RGATCY 3 cut(s) 38, 148, 698
BstYI RGATCY 3 cut(s) 38, 148, 698
BtsI GCAGTG 1 cut(s) 217
BtsIMutI CAGTG 2 cut(s) 99, 217
Cfr10I RCCGGY 1 cut(s) 156
Cfr13I GGNCC 1 cut(s) 725
CseI GACGC 1 cut(s) 577
Csp6I GTAC 3 cut(s) 191, 500, 851
CspAI ACCGGT 1 cut(s) 156
CviAII CATG 3 cut(s) 303, 372, 706
CviJI RGCY 8 cut(s) 58, 101, 271, 307, 528, 645, 681, 691
CviKI_1 RGCY 8 cut(s) 58, 101, 271, 307, 528, 645, 681, 691
CviQI GTAC 3 cut(s) 191, 500, 851
DdeI CTNAG 2 cut(s) 491, 529
DpnI GATC 7 cut(s) 40, 85, 150, 223, 468, 700, 768
DpnII GATC 7 cut(s) 38, 83, 148, 221, 466, 698, 766
DraI TTTAAA 1 cut(s) 522
Eam1104I CTCTTC 1 cut(s) 325
EarI CTCTTC 1 cut(s) 325
Eco130I CCWWGG 1 cut(s) 686
Eco31I GGTCTC 1 cut(s) 717
Eco47I GGWCC 1 cut(s) 725
Eco88I CYCGRG 1 cut(s) 272
EcoO109I RGGNCCY 1 cut(s) 725
EcoT14I CCWWGG 1 cut(s) 686
ErhI CCWWGG 1 cut(s) 686
Esp3I CGTCTC 1 cut(s) 205
FaeI CATG 3 cut(s) 306, 375, 709
FaqI GGGAC 1 cut(s) 711
FatI CATG 3 cut(s) 302, 371, 705
FauI CCCGC 1 cut(s) 113
FspBI CTAG 3 cut(s) 174, 308, 687
HapII CCGG 4 cut(s) 143, 157, 408, 540
HgaI GACGC 1 cut(s) 577
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 3 cut(s) 306, 375, 709
HincII GTYRAC 1 cut(s) 245
HindII GTYRAC 1 cut(s) 245
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 1 cut(s) 275
HpaII CCGG 4 cut(s) 143, 157, 408, 540
HphI GGTGA 4 cut(s) 58, 61, 616, 774
Hpy166II GTNNAC 2 cut(s) 245, 782
Hpy188I TCNGA 3 cut(s) 153, 486, 717
Hpy188III TCNNGA 3 cut(s) 428, 540, 676
Hpy8I GTNNAC 2 cut(s) 245, 782
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 1 cut(s) 432
HpyCH4III ACNGT 3 cut(s) 94, 287, 668
HpyCH4IV ACGT 2 cut(s) 198, 327
HpyCH4V TGCA 1 cut(s) 453
HpyF3I CTNAG 2 cut(s) 491, 529
HpySE526I ACGT 2 cut(s) 198, 327
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 3 cut(s) 306, 375, 709
Kpn2I TCCGGA 1 cut(s) 539
Kzo9I GATC 7 cut(s) 38, 83, 148, 221, 466, 698, 766
LmnI GCTCC 1 cut(s) 106
MaeI CTAG 3 cut(s) 174, 308, 687
MaeII ACGT 2 cut(s) 198, 327
MalI GATC 7 cut(s) 40, 85, 150, 223, 468, 700, 768
MbiI CCGCTC 1 cut(s) 348
MboI GATC 7 cut(s) 38, 83, 148, 221, 466, 698, 766
MboII GAAGA 5 cut(s) 312, 405, 451, 754, 761
MfeI CAATTG 1 cut(s) 434
MflI RGATCY 3 cut(s) 38, 148, 698
MluCI AATT 8 cut(s) 138, 230, 434, 474, 554, 629, 837, 854
MlyI GAGTC 1 cut(s) 284
MnlI CCTC 6 cut(s) 246, 261, 328, 449, 716, 795
MroI TCCGGA 1 cut(s) 539
MroXI GAANNNNTTC 1 cut(s) 59
MseI TTAA 5 cut(s) 206, 249, 521, 747, 836
MspCI CTTAAG 1 cut(s) 248
MspI CCGG 4 cut(s) 143, 157, 408, 540
MspR9I CCNGG 1 cut(s) 144
MunI CAATTG 1 cut(s) 434
NciI CCSGG 1 cut(s) 144
NdeII GATC 7 cut(s) 38, 83, 148, 221, 466, 698, 766
NlaIII CATG 3 cut(s) 306, 375, 709
NlaIV GGNNCC 3 cut(s) 102, 150, 727
NspI RCATGY 1 cut(s) 375
PaeR7I CTCGAG 1 cut(s) 272
PciI ACATGT 1 cut(s) 371
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PdmI GAANNNNTTC 1 cut(s) 59
PinAI ACCGGT 1 cut(s) 156
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
PpuMI RGGWCCY 1 cut(s) 725
PscI ACATGT 1 cut(s) 371
PshBI ATTAAT 1 cut(s) 747
Psp5II RGGWCCY 1 cut(s) 725
PspN4I GGNNCC 3 cut(s) 102, 150, 727
PspPI GGNCC 1 cut(s) 725
PspPPI RGGWCCY 1 cut(s) 725
PspXI VCTCGAGB 1 cut(s) 272
PsrI GAACNNNNNNTAC 2 cut(s) 174, 206
PsuI RGATCY 3 cut(s) 38, 148, 698
RsaI GTAC 3 cut(s) 192, 501, 852
RsaNI GTAC 3 cut(s) 191, 500, 851
SaqAI TTAA 5 cut(s) 206, 249, 521, 747, 836
Sau3AI GATC 7 cut(s) 38, 83, 148, 221, 466, 698, 766
Sau96I GGNCC 1 cut(s) 725
SchI GAGTC 1 cut(s) 284
ScrFI CCNGG 1 cut(s) 144
SfcI CTRYAG 2 cut(s) 118, 829
Sfr274I CTCGAG 1 cut(s) 272
SinI GGWCC 1 cut(s) 725
SlaI CTCGAG 1 cut(s) 272
SmiI ATTTAAAT 1 cut(s) 522
SmlI CTYRAG 3 cut(s) 248, 272, 786
SmoI CTYRAG 3 cut(s) 248, 272, 786
Sse9I AATT 8 cut(s) 138, 230, 434, 474, 554, 629, 837, 854
SsiI CCGC 2 cut(s) 106, 346
SspMI CTAG 3 cut(s) 174, 308, 687
StyD4I CCNGG 1 cut(s) 142
StyI CCWWGG 1 cut(s) 686
SwaI ATTTAAAT 1 cut(s) 522
TaaI ACNGT 3 cut(s) 94, 287, 668
TaiI ACGT 2 cut(s) 201, 330
TaqI TCGA 6 cut(s) 26, 195, 238, 273, 510, 765
TasI AATT 8 cut(s) 138, 230, 434, 474, 554, 629, 837, 854
TatI WGTACW 2 cut(s) 190, 850
Tru1I TTAA 5 cut(s) 206, 249, 521, 747, 836
Tru9I TTAA 5 cut(s) 206, 249, 521, 747, 836
TscAI CASTG 2 cut(s) 99, 217
TspDTI ATGAA 5 cut(s) 52, 68, 291, 405, 694
TspGWI ACGGA 1 cut(s) 280
TspRI CASTG 2 cut(s) 99, 217
Vha464I CTTAAG 1 cut(s) 248
VpaK11BI GGWCC 1 cut(s) 725
VspI ATTAAT 1 cut(s) 747
XapI RAATTY 1 cut(s) 554
XceI RCATGY 1 cut(s) 375
XhoI CTCGAG 1 cut(s) 272
XmaJI CCTAGG 1 cut(s) 686
XmnI GAANNNNTTC 1 cut(s) 59
XspI CTAG 3 cut(s) 174, 308, 687
ZraI GACGTC 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.