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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 261 |
| AccII | CGCG | 1 cut(s) | 269 |
| AciI | CCGC | 3 cut(s) | 125, 267, 269 |
| AclWI | GGATC | 1 cut(s) | 55 |
| AcoI | YGGCCR | 1 cut(s) | 169 |
| AlwI | GGATC | 1 cut(s) | 55 |
| AoxI | GGCC | 1 cut(s) | 169 |
| ApeKI | GCWGC | 3 cut(s) | 122, 164, 221 |
| AspLEI | GCGC | 1 cut(s) | 177 |
| BbvI | GCAGC | 3 cut(s) | 109, 176, 233 |
| BceAI | ACGGC | 1 cut(s) | 239 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 278 |
| BfoI | RGCGCY | 1 cut(s) | 178 |
| BglII | AGATCT | 1 cut(s) | 293 |
| BisI | GCNGC | 3 cut(s) | 123, 165, 222 |
| BlsI | GCNGC | 3 cut(s) | 124, 166, 223 |
| BmsI | GCATC | 2 cut(s) | 30, 151 |
| Bpu10I | CCTNAGC | 1 cut(s) | 44 |
| BsaJI | CCNNGG | 1 cut(s) | 267 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 226, 256 |
| Bse118I | RCCGGY | 2 cut(s) | 167, 171 |
| Bse1I | ACTGG | 1 cut(s) | 97 |
| BseDI | CCNNGG | 1 cut(s) | 267 |
| BseGI | GGATG | 1 cut(s) | 45 |
| BseMII | CTCAG | 1 cut(s) | 120 |
| BseNI | ACTGG | 1 cut(s) | 97 |
| BseRI | GAGGAG | 1 cut(s) | 247 |
| BseX3I | CGGCCG | 1 cut(s) | 169 |
| BseXI | GCAGC | 3 cut(s) | 109, 176, 233 |
| Bsh1236I | CGCG | 1 cut(s) | 269 |
| Bsh1285I | CGRYCG | 2 cut(s) | 172, 303 |
| BshFI | GGCC | 1 cut(s) | 171 |
| BsiEI | CGRYCG | 2 cut(s) | 172, 303 |
| BsiSI | CCGG | 2 cut(s) | 168, 172 |
| BsnI | GGCC | 1 cut(s) | 171 |
| Bsp143I | GATC | 4 cut(s) | 60, 186, 293, 300 |
| BspACI | CCGC | 3 cut(s) | 125, 267, 269 |
| BspANI | GGCC | 1 cut(s) | 171 |
| BspCNI | CTCAG | 1 cut(s) | 119 |
| BspFNI | CGCG | 1 cut(s) | 269 |
| BspPI | GGATC | 1 cut(s) | 55 |
| BsrFI | RCCGGY | 2 cut(s) | 167, 171 |
| BsrI | ACTGG | 1 cut(s) | 97 |
| BssAI | RCCGGY | 2 cut(s) | 167, 171 |
| BssECI | CCNNGG | 1 cut(s) | 267 |
| BssMI | GATC | 4 cut(s) | 60, 186, 293, 300 |
| Bst6I | CTCTTC | 1 cut(s) | 224 |
| BstC8I | GCNNGC | 2 cut(s) | 169, 173 |
| BstDEI | CTNAG | 2 cut(s) | 44, 106 |
| BstDSI | CCRYGG | 1 cut(s) | 267 |
| BstF5I | GGATG | 1 cut(s) | 45 |
| BstFNI | CGCG | 1 cut(s) | 269 |
| BstH2I | RGCGCY | 1 cut(s) | 178 |
| BstHHI | GCGC | 1 cut(s) | 177 |
| BstKTI | GATC | 4 cut(s) | 63, 189, 296, 303 |
| BstMBI | GATC | 4 cut(s) | 60, 186, 293, 300 |
| BstMCI | CGRYCG | 2 cut(s) | 172, 303 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 122 |
| BstUI | CGCG | 1 cut(s) | 269 |
| BstV1I | GCAGC | 3 cut(s) | 109, 176, 233 |
| BstX2I | RGATCY | 1 cut(s) | 293 |
| BstYI | RGATCY | 1 cut(s) | 293 |
| BstZI | CGGCCG | 1 cut(s) | 169 |
| BsuRI | GGCC | 1 cut(s) | 171 |
| BtgI | CCRYGG | 1 cut(s) | 267 |
| BtsCI | GGATG | 1 cut(s) | 45 |
| Cac8I | GCNNGC | 2 cut(s) | 169, 173 |
| CfoI | GCGC | 1 cut(s) | 177 |
| Cfr10I | RCCGGY | 2 cut(s) | 167, 171 |
| Cfr42I | CCGCGG | 1 cut(s) | 270 |
| CviJI | RGCY | 5 cut(s) | 11, 49, 122, 167, 171 |
| CviKI_1 | RGCY | 5 cut(s) | 11, 49, 122, 167, 171 |
| DdeI | CTNAG | 2 cut(s) | 44, 106 |
| DpnI | GATC | 4 cut(s) | 62, 188, 295, 302 |
| DpnII | GATC | 4 cut(s) | 60, 186, 293, 300 |
| EaeI | YGGCCR | 1 cut(s) | 169 |
| EagI | CGGCCG | 1 cut(s) | 169 |
| Eam1104I | CTCTTC | 1 cut(s) | 224 |
| EarI | CTCTTC | 1 cut(s) | 224 |
| EclXI | CGGCCG | 1 cut(s) | 169 |
| Eco52I | CGGCCG | 1 cut(s) | 169 |
| FaiI | YATR | 3 cut(s) | 16, 18, 213 |
| FblI | GTMKAC | 1 cut(s) | 261 |
| Fnu4HI | GCNGC | 3 cut(s) | 123, 165, 222 |
| FokI | GGATG | 1 cut(s) | 52 |
| Fsp4HI | GCNGC | 3 cut(s) | 123, 165, 222 |
| GlaI | GCGC | 1 cut(s) | 176 |
| GluI | GCNGC | 3 cut(s) | 123, 165, 222 |
| HaeII | RGCGCY | 1 cut(s) | 178 |
| HaeIII | GGCC | 1 cut(s) | 171 |
| HapII | CCGG | 2 cut(s) | 168, 172 |
| HhaI | GCGC | 1 cut(s) | 177 |
| Hin6I | GCGC | 1 cut(s) | 175 |
| HinP1I | GCGC | 1 cut(s) | 175 |
| HinfI | GANTC | 2 cut(s) | 200, 216 |
| HpaII | CCGG | 2 cut(s) | 168, 172 |
| Hpy166II | GTNNAC | 1 cut(s) | 262 |
| Hpy188I | TCNGA | 2 cut(s) | 39, 109 |
| Hpy188III | TCNNGA | 1 cut(s) | 158 |
| Hpy8I | GTNNAC | 1 cut(s) | 262 |
| Hpy99I | CGWCG | 1 cut(s) | 260 |
| HpyCH4V | TGCA | 1 cut(s) | 164 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 122 |
| HpyF3I | CTNAG | 2 cut(s) | 44, 106 |
| HspAI | GCGC | 1 cut(s) | 175 |
| KroI | GCCGGC | 2 cut(s) | 167, 171 |
| KroNI | GCCGGC | 2 cut(s) | 169, 173 |
| KspI | CCGCGG | 1 cut(s) | 270 |
| Kzo9I | GATC | 4 cut(s) | 60, 186, 293, 300 |
| LmnI | GCTCC | 1 cut(s) | 182 |
| LpnPI | CCDG | 5 cut(s) | 78, 123, 181, 185, 189 |
| Lsp1109I | GCAGC | 3 cut(s) | 109, 176, 233 |
| LweI | GCATC | 2 cut(s) | 30, 151 |
| MalI | GATC | 4 cut(s) | 62, 188, 295, 302 |
| MboI | GATC | 4 cut(s) | 60, 186, 293, 300 |
| MboII | GAAGA | 4 cut(s) | 26, 75, 135, 241 |
| MflI | RGATCY | 1 cut(s) | 293 |
| MluCI | AATT | 1 cut(s) | 181 |
| MnlI | CCTC | 3 cut(s) | 201, 225, 228 |
| MroNI | GCCGGC | 2 cut(s) | 167, 171 |
| MspA1I | CMGCKG | 1 cut(s) | 269 |
| MspI | CCGG | 2 cut(s) | 168, 172 |
| MvnI | CGCG | 1 cut(s) | 269 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 122 |
| NaeI | GCCGGC | 2 cut(s) | 169, 173 |
| NdeII | GATC | 4 cut(s) | 60, 186, 293, 300 |
| NgoMIV | GCCGGC | 2 cut(s) | 167, 171 |
| PdiI | GCCGGC | 2 cut(s) | 169, 173 |
| PfeI | GAWTC | 2 cut(s) | 200, 216 |
| PkrI | GCNGC | 3 cut(s) | 124, 166, 223 |
| Ple19I | CGATCG | 1 cut(s) | 303 |
| PsuI | RGATCY | 1 cut(s) | 293 |
| PvuI | CGATCG | 1 cut(s) | 303 |
| SacII | CCGCGG | 1 cut(s) | 270 |
| SatI | GCNGC | 3 cut(s) | 123, 165, 222 |
| Sau3AI | GATC | 4 cut(s) | 60, 186, 293, 300 |
| SetI | ASST | 2 cut(s) | 212, 239 |
| SfaNI | GCATC | 2 cut(s) | 30, 151 |
| Sfr303I | CCGCGG | 1 cut(s) | 270 |
| SgrBI | CCGCGG | 1 cut(s) | 270 |
| Sse9I | AATT | 1 cut(s) | 181 |
| SsiI | CCGC | 3 cut(s) | 125, 267, 269 |
| TaqI | TCGA | 1 cut(s) | 303 |
| TasI | AATT | 1 cut(s) | 181 |
| TfiI | GAWTC | 2 cut(s) | 200, 216 |
| TseI | GCWGC | 3 cut(s) | 122, 164, 221 |
| TspDTI | ATGAA | 3 cut(s) | 20, 57, 135 |
| TspGWI | ACGGA | 1 cut(s) | 53 |
| XmiI | GTMKAC | 1 cut(s) | 261 |