RchiOBHm_Chr1g0350511

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000467
Physical Location & Seq
Reverse (-)
43651807 .. 43652556
750 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57636

Sequence Viewer

Length: 750 bp
ATGAGTTCTTCTTGTTTGCATGATTGTGTGAGTTGGCTAGTGAATCAAAAAGTTGAAGAACTAGTACTCAAAGTTGGGTCAAGTGGTGGATTTGATTTGCCTCTTTGTGTATTTCAATGTGATTCATTGAGATGTCTAAAGTTGGATGCTCACATTTCATGGTTTGTATCTCCATCATTTTTGTCGGGAGCTACCAATGGTCTCGGTTCACTTCACACCTTGTCTCTAGCTCATGTGGATTTCTTGTTTAATTGTTTGTGTAAGGATTTGTTTACTGGTTCTTCATTCCCTTGTCTCGAGAGTTTGACCATTCAGAGTTGTAATGGAATGACTCATCTGAAAATTAGCTGTCCCAACCTGAAAGTTGTGCACGTGAATTCGATGAATATAAACAGACTGGACATCTCCGGAATGAGACTGGAAAGTTTGCGAGTCTCGTTTTCTTTCTTCAGGTGTGACAGTGAAAGCTGGGTCAGCGTTTTCGCTCCAAATCTGAAAACTTTCTCTTGGTTGGCTAATTGCATTACTGAGAAATGTTTGATCCACGGCTTTCCTGCCCTGAAAACATCTCACATAAACTGTCGGTGTCCAGACGATCTTAGCGTGGCGAAGATTCATAGTGCAGTAAATCTTGTTTGGGCATCATCCCAAGTTCAAAGCCTAGTCATATCCCGCGACTTTCTCCGGGTTAGTTGTCCATCTGTTTCCTTTTTTTTTTTTTTTTTGGAGAATCTATCTGTTTCCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

249

Amino Acids

27.58

Weight (kDa)

7.06

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 675
AccIII TCCGGA 1 cut(s) 407
AciI CCGC 1 cut(s) 673
AclWI GGATC 1 cut(s) 535
AcsI RAATTY 1 cut(s) 376
AcuI CTGAAG 1 cut(s) 433
AcvI CACGTG 1 cut(s) 373
AfaI GTAC 1 cut(s) 66
AgsI TTSAA 3 cut(s) 56, 116, 656
AhlI ACTAGT 1 cut(s) 61
AluBI AGCT 4 cut(s) 191, 230, 348, 468
AluI AGCT 4 cut(s) 191, 230, 348, 468
Alw21I GWGCWC 1 cut(s) 372
Alw26I GTCTC 5 cut(s) 206, 228, 299, 409, 439
Alw44I GTGCAC 1 cut(s) 368
AlwI GGATC 1 cut(s) 535
Ama87I CYCGRG 1 cut(s) 296
Aor13HI TCCGGA 1 cut(s) 407
ApaLI GTGCAC 1 cut(s) 368
ApoI RAATTY 1 cut(s) 376
Asp700I GAANNNNTTC 1 cut(s) 500
AsuC2I CCSGG 1 cut(s) 686
AvaI CYCGRG 1 cut(s) 296
BaeGI GKGCMC 1 cut(s) 372
BarI GAAGNNNNNNTAC 2 cut(s) 48, 80
BbrPI CACGTG 1 cut(s) 373
Bbv12I GWGCWC 1 cut(s) 372
BccI CCATC 2 cut(s) 181, 706
BceAI ACGGC 1 cut(s) 562
BcnI CCSGG 1 cut(s) 686
BcoDI GTCTC 5 cut(s) 206, 228, 299, 409, 439
BcuI ACTAGT 1 cut(s) 61
BfaI CTAG 4 cut(s) 38, 62, 227, 662
BmcAI AGTACT 1 cut(s) 66
Bme1390I CCNGG 1 cut(s) 686
BmeT110I CYCGRG 1 cut(s) 296
BmrFI CCNGG 1 cut(s) 686
BmsI GCATC 2 cut(s) 136, 650
BpuMI CCSGG 1 cut(s) 686
BsaAI YACGTR 1 cut(s) 373
BsaI GGTCTC 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 544
BsaWI WCCGGW 1 cut(s) 407
Bse1I ACTGG 3 cut(s) 280, 402, 423
BseAI TCCGGA 1 cut(s) 407
BseDI CCNNGG 1 cut(s) 544
BseGI GGATG 2 cut(s) 151, 644
BseMII CTCAG 1 cut(s) 519
BseNI ACTGG 3 cut(s) 280, 402, 423
BseSI GKGCMC 1 cut(s) 372
BseYI CCCAGC 1 cut(s) 468
BsgI GTGCAG 1 cut(s) 642
Bsh1236I CGCG 1 cut(s) 675
BsiHKAI GWGCWC 1 cut(s) 372
BsiHKCI CYCGRG 1 cut(s) 296
BsiSI CCGG 2 cut(s) 408, 685
BslFI GGGAC 1 cut(s) 336
BsmAI GTCTC 5 cut(s) 206, 228, 299, 409, 439
BsmFI GGGAC 1 cut(s) 336
Bso31I GGTCTC 1 cut(s) 206
BsoBI CYCGRG 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 372
Bsp13I TCCGGA 1 cut(s) 407
Bsp143I GATC 2 cut(s) 540, 595
BspACI CCGC 1 cut(s) 673
BspCNI CTCAG 1 cut(s) 520
BspEI TCCGGA 1 cut(s) 407
BspFNI CGCG 1 cut(s) 675
BspPI GGATC 1 cut(s) 535
BspTNI GGTCTC 1 cut(s) 206
BsrI ACTGG 3 cut(s) 280, 402, 423
BssECI CCNNGG 1 cut(s) 544
BssMI GATC 2 cut(s) 540, 595
Bst4CI ACNGT 2 cut(s) 461, 581
BstBAI YACGTR 1 cut(s) 373
BstDEI CTNAG 2 cut(s) 528, 599
BstDSI CCRYGG 1 cut(s) 544
BstF5I GGATG 2 cut(s) 151, 644
BstFNI CGCG 1 cut(s) 675
BstKTI GATC 2 cut(s) 543, 598
BstMAI GTCTC 5 cut(s) 206, 228, 299, 409, 439
BstMBI GATC 2 cut(s) 540, 595
BstMWI GCNNNNNNNGC 1 cut(s) 474
BstSCI CCNGG 1 cut(s) 684
BstSLI GKGCMC 1 cut(s) 372
BstUI CGCG 1 cut(s) 675
BtgI CCRYGG 1 cut(s) 544
BtsCI GGATG 2 cut(s) 151, 644
BtsIMutI CAGTG 1 cut(s) 466
Csp6I GTAC 1 cut(s) 65
CviAII CATG 3 cut(s) 20, 159, 233
CviJI RGCY 8 cut(s) 37, 191, 230, 348, 468, 515, 549, 660
CviKI_1 RGCY 8 cut(s) 37, 191, 230, 348, 468, 515, 549, 660
CviQI GTAC 1 cut(s) 65
DdeI CTNAG 2 cut(s) 528, 599
DpnI GATC 2 cut(s) 542, 597
DpnII GATC 2 cut(s) 540, 595
Eco31I GGTCTC 1 cut(s) 206
Eco57I CTGAAG 1 cut(s) 433
Eco72I CACGTG 1 cut(s) 373
Eco88I CYCGRG 1 cut(s) 296
EcoRI GAATTC 1 cut(s) 376
FaeI CATG 3 cut(s) 23, 162, 236
FaiI YATR 7 cut(s) 21, 160, 234, 389, 575, 618, 668
FaqI GGGAC 1 cut(s) 336
FatI CATG 3 cut(s) 19, 158, 232
FauI CCCGC 1 cut(s) 680
FokI GGATG 2 cut(s) 158, 631
FspBI CTAG 4 cut(s) 38, 62, 227, 662
GsaI CCCAGC 1 cut(s) 472
HapII CCGG 2 cut(s) 408, 685
Hin1II CATG 3 cut(s) 23, 162, 236
HinfI GANTC 6 cut(s) 43, 122, 331, 432, 613, 730
HpaII CCGG 2 cut(s) 408, 685
Hpy166II GTNNAC 3 cut(s) 209, 273, 370
Hpy188I TCNGA 3 cut(s) 315, 339, 495
Hpy188III TCNNGA 5 cut(s) 186, 296, 298, 408, 590
Hpy8I GTNNAC 3 cut(s) 209, 273, 370
HpyCH4III ACNGT 2 cut(s) 461, 581
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 4 cut(s) 19, 370, 522, 623
HpyF10VI GCNNNNNNNGC 1 cut(s) 474
HpyF3I CTNAG 2 cut(s) 528, 599
HpySE526I ACGT 1 cut(s) 372
Hsp92II CATG 3 cut(s) 23, 162, 236
Kpn2I TCCGGA 1 cut(s) 407
Kzo9I GATC 2 cut(s) 540, 595
LmnI GCTCC 2 cut(s) 188, 490
LweI GCATC 2 cut(s) 136, 650
MaeI CTAG 4 cut(s) 38, 62, 227, 662
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 1 cut(s) 455
MalI GATC 2 cut(s) 542, 597
MboI GATC 2 cut(s) 540, 595
MboII GAAGA 4 cut(s) 68, 273, 439, 622
MhlI GDGCHC 1 cut(s) 372
MluCI AATT 4 cut(s) 250, 342, 376, 517
MlyI GAGTC 2 cut(s) 325, 441
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 1 cut(s) 111
MroI TCCGGA 1 cut(s) 407
MroXI GAANNNNTTC 1 cut(s) 500
MseI TTAA 2 cut(s) 249, 748
MslI CAYNNNNRTG 2 cut(s) 24, 130
MspI CCGG 2 cut(s) 408, 685
MspR9I CCNGG 1 cut(s) 686
MvnI CGCG 1 cut(s) 675
MwoI GCNNNNNNNGC 1 cut(s) 474
NciI CCSGG 1 cut(s) 686
NdeII GATC 2 cut(s) 540, 595
NlaIII CATG 3 cut(s) 23, 162, 236
NmuCI GTSAC 1 cut(s) 455
PaeR7I CTCGAG 1 cut(s) 296
PcsI WCGNNNNNNNCGW 1 cut(s) 600
PdmI GAANNNNTTC 1 cut(s) 500
PfeI GAWTC 4 cut(s) 43, 122, 613, 730
PleI GAGTC 2 cut(s) 325, 440
PmaCI CACGTG 1 cut(s) 373
PmlI CACGTG 1 cut(s) 373
PpsI GAGTC 2 cut(s) 325, 440
Ppu21I YACGTR 1 cut(s) 373
PspCI CACGTG 1 cut(s) 373
PspFI CCCAGC 1 cut(s) 468
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
RseI CAYNNNNRTG 2 cut(s) 24, 130
SaqAI TTAA 2 cut(s) 249, 748
Sau3AI GATC 2 cut(s) 540, 595
ScaI AGTACT 1 cut(s) 66
SchI GAGTC 2 cut(s) 325, 441
ScrFI CCNGG 1 cut(s) 686
SduI GDGCHC 1 cut(s) 372
SetI ASST 8 cut(s) 193, 221, 232, 350, 360, 375, 455, 470
SfaNI GCATC 2 cut(s) 136, 650
Sfr274I CTCGAG 1 cut(s) 296
SlaI CTCGAG 1 cut(s) 296
SmiMI CAYNNNNRTG 2 cut(s) 24, 130
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
SpeI ACTAGT 1 cut(s) 61
Sse9I AATT 4 cut(s) 250, 342, 376, 517
SsiI CCGC 1 cut(s) 673
SspMI CTAG 4 cut(s) 38, 62, 227, 662
StyD4I CCNGG 1 cut(s) 684
TaaI ACNGT 2 cut(s) 461, 581
TaiI ACGT 1 cut(s) 375
TaqI TCGA 2 cut(s) 297, 380
TasI AATT 4 cut(s) 250, 342, 376, 517
TatI WGTACW 1 cut(s) 64
TfiI GAWTC 4 cut(s) 43, 122, 613, 730
Tru1I TTAA 2 cut(s) 249, 748
Tru9I TTAA 2 cut(s) 249, 748
TscAI CASTG 1 cut(s) 466
TseFI GTSAC 1 cut(s) 455
Tsp45I GTSAC 1 cut(s) 455
TspDTI ATGAA 5 cut(s) 114, 147, 273, 398, 605
TspGWI ACGGA 1 cut(s) 733
TspRI CASTG 1 cut(s) 466
VneI GTGCAC 1 cut(s) 368
XapI RAATTY 1 cut(s) 376
XhoI CTCGAG 1 cut(s) 296
XmnI GAANNNNTTC 1 cut(s) 500
XspI CTAG 4 cut(s) 38, 62, 227, 662
ZrmI AGTACT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.