FvH4_6g37570

ankyrin repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000693
Physical Location & Seq
Forward (+)
29593422 .. 29596152
2731 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g37570.t1

Sequence Viewer

Length: 1020 bp
ATGGCAGAGAACTATGAGGCTGATGTGCAGGAACTGGTCAAGGAGGATTTTCTACCCTATGACGGCAACCGTTCAGCTCTGGTGGAGCGTTTTCGCCTGGCCATCATGGCTAATGATTTGGGAGCTGTGAAAGAATGTGTGGCTATTGCTGAGAGATTTAGTCCGGAATATGGCAAAAAGGTTCTCCTCAATGCTACTGACCGAGAAGGGTGGACGCCACTCTTCACTGCTCTCCAACACGATGCCAAAGAATGCTTCCATTACCTGTTCGAAAATGGTTCCGGAACCATAAGGGCCAGTGAACCAAGAGGTGATATGCACGCACTGACCTATGCTTTGGATGTTGAGAGTGGCAAGGTCAATTGGGGTCCAAAAGTGCAGTCATTGCCCAACCTGATCCTTCAACTTGGGGAAAAGAGGTATGGGGGTAGCCCAATCATGCGGCTCTTCCAGCAGAACAGATATCTTTCTACATGGTGCGCTAAAGTATTGATTCGTGGAGAGGAGGGAAGGTGTTCCCAAGATGTGATTGGTTTTGGAATAGTGCTGAGACTTAATGAAGAAACGGAGGCTAACTACAAATTGGATTTGGGTGAAATTCATGAAACTGTGTGCCAACAATTTACTAATGCAGCTCCACAAGCAATTGATTTGACTGATCCCTCTACTGAGCCAACAAAAATGCCTGAACCAACAAAAATGCTTATATGCCAAGCACTGTTGATTCAAGGTGGAGAAGTAAAAACAAAACAAAAAAACAATACAGGGGGTGAGGCTGCTGCTGGGAGTGAGAAGTTGAAGCTTGAGATGATGCAGAGTGATCTAGTGGAGAAGCACTGCTGTTTTGGGTGCAGAGAGATTCAAAAGTCCAAGTCATTCTTGTGGGAGAACAAACCTTGCTCTCACGTCCTGTGGTGCGCAGATTGCAAGGAGTGCCTAATGAAGATAACTGAGGGACCTGGGCATCCCTGCGTCCTTTGTGGTGCGACGGTTATTTCCATATTACCTGTGCTCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

340

Amino Acids

37.78

Weight (kDa)

5.43

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 919
AccIII TCCGGA 2 cut(s) 163, 281
AciI CCGC 1 cut(s) 442
AclWI GGATC 2 cut(s) 391, 653
AcoI YGGCCR 1 cut(s) 99
AcsI RAATTY 1 cut(s) 597
AcyI GRCGYC 1 cut(s) 215
AfiI CCNNNNNNNGG 2 cut(s) 62, 170
AgsI TTSAA 4 cut(s) 404, 728, 799, 863
AjiI CACGTC 1 cut(s) 907
AjnI CCWGG 2 cut(s) 96, 958
AjuI GAANNNNNNNTTGG 2 cut(s) 239, 271
AluBI AGCT 4 cut(s) 77, 125, 635, 802
AluI AGCT 4 cut(s) 77, 125, 635, 802
Alw21I GWGCWC 1 cut(s) 1014
Alw26I GTCTC 1 cut(s) 544
AlwI GGATC 2 cut(s) 391, 653
AlwNI CAGNNNCTG 1 cut(s) 34
Aor13HI TCCGGA 2 cut(s) 163, 281
AoxI GGCC 2 cut(s) 99, 294
ApeKI GCWGC 3 cut(s) 632, 776, 779
ApoI RAATTY 1 cut(s) 597
ArsI GACNNNNNNTTYG 4 cut(s) 319, 351, 365, 397
Asp700I GAANNNNTTC 1 cut(s) 514
AspLEI GCGC 2 cut(s) 482, 920
AspS9I GGNCC 3 cut(s) 294, 368, 956
AsuHPI GGTGA 3 cut(s) 323, 605, 782
AsuII TTCGAA 1 cut(s) 270
AvaII GGWCC 2 cut(s) 368, 956
BalI TGGCCA 1 cut(s) 101
Bbv12I GWGCWC 1 cut(s) 1014
BbvI GCAGC 3 cut(s) 644, 763, 766
BccI CCATC 1 cut(s) 110
BceAI ACGGC 1 cut(s) 79
BciT130I CCWGG 2 cut(s) 98, 960
BcoDI GTCTC 1 cut(s) 544
BfaI CTAG 1 cut(s) 824
BglI GCCNNNNNGGC 1 cut(s) 107
BisI GCNGC 4 cut(s) 443, 633, 777, 780
BlsI GCNGC 4 cut(s) 444, 634, 778, 781
Bme1390I CCNGG 2 cut(s) 98, 960
Bme18I GGWCC 2 cut(s) 368, 956
BmgBI CACGTC 1 cut(s) 907
BmgT120I GGNCC 3 cut(s) 294, 368, 956
BmiI GGNNCC 4 cut(s) 280, 286, 369, 957
BmrFI CCNGG 2 cut(s) 98, 960
BmsI GCATC 3 cut(s) 232, 801, 973
Bpu14I TTCGAA 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 824
BsaHI GRCGYC 1 cut(s) 215
BsaJI CCNNGG 1 cut(s) 959
BsaWI WCCGGW 2 cut(s) 163, 281
BsaXI ACNNNNNCTCC 2 cut(s) 497, 527
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 170
Bse1I ACTGG 2 cut(s) 39, 297
Bse3DI GCAATG 1 cut(s) 383
BseAI TCCGGA 2 cut(s) 163, 281
BseBI CCWGG 2 cut(s) 98, 960
BseDI CCNNGG 1 cut(s) 959
BseGI GGATG 2 cut(s) 346, 964
BseLI CCNNNNNNNGG 2 cut(s) 62, 170
BseMI GCAATG 1 cut(s) 383
BseMII CTCAG 4 cut(s) 141, 539, 660, 942
BseNI ACTGG 2 cut(s) 39, 297
BseRI GAGGAG 2 cut(s) 176, 518
BseXI GCAGC 3 cut(s) 644, 763, 766
BseYI CCCAGC 1 cut(s) 782
BsgI GTGCAG 3 cut(s) 47, 398, 871
BshFI GGCC 2 cut(s) 101, 296
BsiHKAI GWGCWC 1 cut(s) 1014
BsiSI CCGG 2 cut(s) 164, 282
BslFI GGGAC 1 cut(s) 969
BslI CCNNNNNNNGG 2 cut(s) 62, 170
BsmAI GTCTC 1 cut(s) 544
BsmFI GGGAC 1 cut(s) 969
BsmI GAATGC 1 cut(s) 257
BsnI GGCC 2 cut(s) 101, 296
Bsp119I TTCGAA 1 cut(s) 270
Bsp1286I GDGCHC 1 cut(s) 1014
Bsp13I TCCGGA 2 cut(s) 163, 281
Bsp143I GATC 3 cut(s) 396, 658, 820
BspACI CCGC 1 cut(s) 442
BspANI GGCC 2 cut(s) 101, 296
BspCNI CTCAG 4 cut(s) 142, 540, 661, 943
BspEI TCCGGA 2 cut(s) 163, 281
BspHI TCATGA 1 cut(s) 601
BspLI GGNNCC 4 cut(s) 280, 286, 369, 957
BspPI GGATC 2 cut(s) 391, 653
BspQI GCTCTTC 1 cut(s) 452
BspT104I TTCGAA 1 cut(s) 270
BsrDI GCAATG 1 cut(s) 383
BsrI ACTGG 2 cut(s) 39, 297
BssECI CCNNGG 1 cut(s) 959
BssMI GATC 3 cut(s) 396, 658, 820
BssNI GRCGYC 1 cut(s) 215
Bst2UI CCWGG 2 cut(s) 98, 960
Bst4CI ACNGT 4 cut(s) 71, 610, 720, 991
Bst6I CTCTTC 2 cut(s) 227, 452
BstACI GRCGYC 1 cut(s) 215
BstAPI GCANNNNNTGC 2 cut(s) 385, 933
BstBI TTCGAA 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 321
BstDEI CTNAG 4 cut(s) 150, 548, 669, 951
BstF5I GGATG 2 cut(s) 346, 964
BstHHI GCGC 2 cut(s) 482, 920
BstKTI GATC 3 cut(s) 399, 661, 823
BstMAI GTCTC 1 cut(s) 544
BstMBI GATC 3 cut(s) 396, 658, 820
BstMWI GCNNNNNNNGC 6 cut(s) 107, 385, 451, 641, 924, 933
BstNI CCWGG 2 cut(s) 98, 960
BstSCI CCNGG 2 cut(s) 96, 958
BstV1I GCAGC 3 cut(s) 644, 763, 766
BsuRI GGCC 2 cut(s) 101, 296
BtrI CACGTC 1 cut(s) 907
BtsCI GGATG 2 cut(s) 346, 964
BtsI GCAGTG 2 cut(s) 225, 835
BtsIMutI CAGTG 5 cut(s) 225, 304, 323, 716, 835
Cac8I GCNNGC 1 cut(s) 321
CaiI CAGNNNCTG 1 cut(s) 34
CciI TCATGA 1 cut(s) 601
CfoI GCGC 2 cut(s) 482, 920
Cfr13I GGNCC 3 cut(s) 294, 368, 956
CseI GACGC 2 cut(s) 223, 961
CviAII CATG 5 cut(s) 106, 439, 474, 602, 1015
DdeI CTNAG 4 cut(s) 150, 548, 669, 951
DpnI GATC 3 cut(s) 398, 660, 822
DpnII GATC 3 cut(s) 396, 658, 820
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 2 cut(s) 227, 452
EarI CTCTTC 2 cut(s) 227, 452
Eco32I GATATC 1 cut(s) 464
Eco47I GGWCC 2 cut(s) 368, 956
EcoO109I RGGNCCY 1 cut(s) 956
EcoRII CCWGG 2 cut(s) 96, 958
EcoRV GATATC 1 cut(s) 464
FaeI CATG 5 cut(s) 109, 442, 477, 605, 1018
FalI AAGNNNNNCTT 2 cut(s) 863, 895
FaqI GGGAC 1 cut(s) 969
FatI CATG 5 cut(s) 105, 438, 473, 601, 1014
Fnu4HI GCNGC 4 cut(s) 443, 633, 777, 780
FokI GGATG 2 cut(s) 353, 951
Fsp4HI GCNGC 4 cut(s) 443, 633, 777, 780
FspBI CTAG 1 cut(s) 824
FspI TGCGCA 1 cut(s) 919
GlaI GCGC 2 cut(s) 481, 919
GluI GCNGC 4 cut(s) 443, 633, 777, 780
GsaI CCCAGC 1 cut(s) 786
HaeIII GGCC 2 cut(s) 101, 296
HapII CCGG 2 cut(s) 164, 282
HgaI GACGC 2 cut(s) 223, 961
HhaI GCGC 2 cut(s) 482, 920
Hin1I GRCGYC 1 cut(s) 215
Hin1II CATG 5 cut(s) 109, 442, 477, 605, 1018
Hin6I GCGC 2 cut(s) 480, 918
HinP1I GCGC 2 cut(s) 480, 918
HindIII AAGCTT 1 cut(s) 800
HinfI GANTC 3 cut(s) 493, 724, 859
HpaII CCGG 2 cut(s) 164, 282
HphI GGTGA 3 cut(s) 323, 605, 782
Hpy166II GTNNAC 2 cut(s) 213, 302
Hpy188III TCNNGA 3 cut(s) 164, 282, 602
Hpy8I GTNNAC 2 cut(s) 213, 302
Hpy99I CGWCG 1 cut(s) 991
HpyAV CCTTC 3 cut(s) 200, 410, 504
HpyCH4III ACNGT 4 cut(s) 71, 610, 720, 991
HpyCH4IV ACGT 1 cut(s) 906
HpyCH4V TGCA 7 cut(s) 28, 319, 379, 632, 814, 852, 927
HpyF10VI GCNNNNNNNGC 6 cut(s) 107, 385, 451, 641, 924, 933
HpyF3I CTNAG 4 cut(s) 150, 548, 669, 951
HpySE526I ACGT 1 cut(s) 906
Hsp92I GRCGYC 1 cut(s) 215
Hsp92II CATG 5 cut(s) 109, 442, 477, 605, 1018
HspAI GCGC 2 cut(s) 480, 918
Kpn2I TCCGGA 2 cut(s) 163, 281
Kzo9I GATC 3 cut(s) 396, 658, 820
LguI GCTCTTC 1 cut(s) 452
LmnI GCTCC 3 cut(s) 85, 122, 640
Lsp1109I GCAGC 3 cut(s) 644, 763, 766
LweI GCATC 3 cut(s) 232, 801, 973
MaeI CTAG 1 cut(s) 824
MaeII ACGT 1 cut(s) 906
MalI GATC 3 cut(s) 398, 660, 822
MboI GATC 3 cut(s) 396, 658, 820
MboII GAAGA 4 cut(s) 214, 439, 572, 955
MfeI CAATTG 2 cut(s) 361, 645
MhlI GDGCHC 1 cut(s) 1014
MlsI TGGCCA 1 cut(s) 101
MluCI AATT 5 cut(s) 361, 581, 597, 620, 645
MluNI TGGCCA 1 cut(s) 101
MmeI TCCRAC 1 cut(s) 259
Mox20I TGGCCA 1 cut(s) 101
MroI TCCGGA 2 cut(s) 163, 281
MroXI GAANNNNTTC 1 cut(s) 514
MscI TGGCCA 1 cut(s) 101
MseI TTAA 1 cut(s) 555
MslI CAYNNNNRTG 1 cut(s) 880
Msp20I TGGCCA 1 cut(s) 101
MspI CCGG 2 cut(s) 164, 282
MspR9I CCNGG 2 cut(s) 98, 960
MunI CAATTG 2 cut(s) 361, 645
Mva1269I GAATGC 1 cut(s) 257
MvaI CCWGG 2 cut(s) 98, 960
MwoI GCNNNNNNNGC 6 cut(s) 107, 385, 451, 641, 924, 933
NdeII GATC 3 cut(s) 396, 658, 820
NlaIII CATG 5 cut(s) 109, 442, 477, 605, 1018
NlaIV GGNNCC 4 cut(s) 280, 286, 369, 957
NsbI TGCGCA 1 cut(s) 919
NspV TTCGAA 1 cut(s) 270
PagI TCATGA 1 cut(s) 601
PciSI GCTCTTC 1 cut(s) 452
PctI GAATGC 1 cut(s) 257
PdmI GAANNNNTTC 1 cut(s) 514
PfeI GAWTC 3 cut(s) 493, 724, 859
PkrI GCNGC 4 cut(s) 444, 634, 778, 781
PpuMI RGGWCCY 1 cut(s) 956
Psp5II RGGWCCY 1 cut(s) 956
Psp6I CCWGG 2 cut(s) 96, 958
PspFI CCCAGC 1 cut(s) 782
PspGI CCWGG 2 cut(s) 96, 958
PspN4I GGNNCC 4 cut(s) 280, 286, 369, 957
PspPI GGNCC 3 cut(s) 294, 368, 956
PspPPI RGGWCCY 1 cut(s) 956
PstNI CAGNNNCTG 1 cut(s) 34
RseI CAYNNNNRTG 1 cut(s) 880
SapI GCTCTTC 1 cut(s) 452
SaqAI TTAA 1 cut(s) 555
SatI GCNGC 4 cut(s) 443, 633, 777, 780
Sau3AI GATC 3 cut(s) 396, 658, 820
Sau96I GGNCC 3 cut(s) 294, 368, 956
ScrFI CCNGG 2 cut(s) 98, 960
SduI GDGCHC 1 cut(s) 1014
SfaNI GCATC 3 cut(s) 232, 801, 973
SfuI TTCGAA 1 cut(s) 270
SinI GGWCC 2 cut(s) 368, 956
SmiMI CAYNNNNRTG 1 cut(s) 880
SmlI CTYRAG 1 cut(s) 803
SmoI CTYRAG 1 cut(s) 803
Sse9I AATT 5 cut(s) 361, 581, 597, 620, 645
SsiI CCGC 1 cut(s) 442
SspMI CTAG 1 cut(s) 824
StyD4I CCNGG 2 cut(s) 96, 958
TaaI ACNGT 4 cut(s) 71, 610, 720, 991
TaiI ACGT 1 cut(s) 909
TaqI TCGA 1 cut(s) 270
TaqII GACCGA 1 cut(s) 216
TasI AATT 5 cut(s) 361, 581, 597, 620, 645
TauI GCSGC 1 cut(s) 445
TfiI GAWTC 3 cut(s) 493, 724, 859
Tru1I TTAA 1 cut(s) 555
Tru9I TTAA 1 cut(s) 555
TscAI CASTG 5 cut(s) 232, 304, 330, 723, 842
TseI GCWGC 3 cut(s) 632, 776, 779
TspDTI ATGAA 4 cut(s) 573, 590, 618, 956
TspGWI ACGGA 1 cut(s) 581
TspRI CASTG 5 cut(s) 232, 304, 330, 723, 842
VpaK11BI GGWCC 2 cut(s) 368, 956
XapI RAATTY 1 cut(s) 597
XcmI CCANNNNNNNNNTGG 1 cut(s) 527
XmnI GAANNNNTTC 1 cut(s) 514
XspI CTAG 1 cut(s) 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.