Rh1AG068100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000693
Physical Location & Seq
Forward (+)
11407819 .. 11418703
10885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG068100.1

Sequence Viewer

Length: 243 bp
ATGATAGGGAGTCTACTCACCAAGTACTCCTCAGCCAAAGTCAAGTCGTCTGGAGGAGGTGCTGCTGGGCCTGGAGGAGGTAATGGAACAGCGGTGCCACGATGGAGGACGGCGAAGGAGGCGGCGAGGCCTGGGTGGAAGGGTAGGTGGCGGACTGGACTTGATGGGTGCTCCTCCACTATTTGCGATCTCCGATCAACGTCAACCTCCATAGAAACTGAGTTGGATGCCATCATTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.23

Weight (kDa)

9.78

Isoelectric Point (pI)

55.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 94
AccI GTMKAC 1 cut(s) 13
AciI CCGC 3 cut(s) 92, 122, 151
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 77
AjnI CCWGG 2 cut(s) 70, 130
Alw21I GWGCWC 1 cut(s) 173
AoxI GGCC 2 cut(s) 68, 128
ApeKI GCWGC 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 10
BanI GGYRCC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 173
BbvCI CCTCAGC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 49
BccI CCATC 3 cut(s) 96, 158, 239
BceAI ACGGC 1 cut(s) 126
BciT130I CCWGG 2 cut(s) 72, 132
BisI GCNGC 2 cut(s) 63, 123
BlsI GCNGC 2 cut(s) 64, 124
BmcAI AGTACT 1 cut(s) 26
Bme1390I CCNGG 2 cut(s) 72, 132
BmgT120I GGNCC 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 96
BmrFI CCNGG 2 cut(s) 72, 132
BmsI GCATC 1 cut(s) 217
BpmI CTGGAG 2 cut(s) 72, 93
Bpu10I CCTNAGC 1 cut(s) 31
BsaJI CCNNGG 1 cut(s) 131
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 160
BseBI CCWGG 2 cut(s) 72, 132
BseDI CCNNGG 1 cut(s) 131
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMII CTCAG 2 cut(s) 45, 210
BseNI ACTGG 1 cut(s) 160
BseRI GAGGAG 4 cut(s) 19, 69, 90, 163
BseXI GCAGC 1 cut(s) 49
BseYI CCCAGC 1 cut(s) 65
BshFI GGCC 2 cut(s) 70, 130
BshNI GGYRCC 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 77
BsnI GGCC 2 cut(s) 70, 130
Bsp1286I GDGCHC 1 cut(s) 173
Bsp143I GATC 2 cut(s) 187, 194
BspACI CCGC 3 cut(s) 92, 122, 151
BspANI GGCC 2 cut(s) 70, 130
BspCNI CTCAG 2 cut(s) 44, 211
BspLI GGNNCC 1 cut(s) 96
BspT107I GGYRCC 1 cut(s) 94
BsrI ACTGG 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 131
BssMI GATC 2 cut(s) 187, 194
Bst2UI CCWGG 2 cut(s) 72, 132
BstDEI CTNAG 2 cut(s) 31, 219
BstENI CCTNNNNNAGG 1 cut(s) 75
BstF5I GGATG 1 cut(s) 232
BstKTI GATC 2 cut(s) 190, 197
BstMBI GATC 2 cut(s) 187, 194
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstNI CCWGG 2 cut(s) 72, 132
BstSCI CCNGG 2 cut(s) 70, 130
BstV1I GCAGC 1 cut(s) 49
BsuRI GGCC 2 cut(s) 70, 130
BtsCI GGATG 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 68
Csp6I GTAC 1 cut(s) 25
CviJI RGCY 3 cut(s) 35, 70, 130
CviKI_1 RGCY 3 cut(s) 35, 70, 130
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 2 cut(s) 31, 219
DpnI GATC 2 cut(s) 189, 196
DpnII GATC 2 cut(s) 187, 194
EciI GGCGGA 1 cut(s) 166
Eco147I AGGCCT 1 cut(s) 130
EcoNI CCTNNNNNAGG 1 cut(s) 75
EcoRII CCWGG 2 cut(s) 70, 130
FaiI YATR 2 cut(s) 212, 241
FblI GTMKAC 1 cut(s) 13
Fnu4HI GCNGC 2 cut(s) 63, 123
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 2 cut(s) 63, 123
GluI GCNGC 2 cut(s) 63, 123
GsaI CCCAGC 1 cut(s) 69
GsuI CTGGAG 2 cut(s) 72, 93
HaeIII GGCC 2 cut(s) 70, 130
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HinfI GANTC 1 cut(s) 10
HphI GGTGA 1 cut(s) 10
Hpy166II GTNNAC 2 cut(s) 14, 204
Hpy188I TCNGA 1 cut(s) 194
Hpy188III TCNNGA 1 cut(s) 51
Hpy8I GTNNAC 2 cut(s) 14, 204
HpyAV CCTTC 2 cut(s) 109, 133
HpyCH4IV ACGT 1 cut(s) 200
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 2 cut(s) 31, 219
HpySE526I ACGT 1 cut(s) 200
Kzo9I GATC 2 cut(s) 187, 194
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 7 cut(s) 36, 51, 57, 84, 117, 141, 144
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 1 cut(s) 217
MaeII ACGT 1 cut(s) 200
MalI GATC 2 cut(s) 189, 196
MboI GATC 2 cut(s) 187, 194
MhlI GDGCHC 1 cut(s) 173
MlyI GAGTC 1 cut(s) 19
MmeI TCCRAC 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 92
MspR9I CCNGG 2 cut(s) 72, 132
MvaI CCWGG 2 cut(s) 72, 132
MwoI GCNNNNNNNGC 1 cut(s) 119
NdeII GATC 2 cut(s) 187, 194
NlaIV GGNNCC 1 cut(s) 96
PceI AGGCCT 1 cut(s) 130
PkrI GCNGC 2 cut(s) 64, 124
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
Psp6I CCWGG 2 cut(s) 70, 130
PspFI CCCAGC 1 cut(s) 65
PspGI CCWGG 2 cut(s) 70, 130
PspN4I GGNNCC 1 cut(s) 96
PspPI GGNCC 1 cut(s) 68
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
SatI GCNGC 2 cut(s) 63, 123
Sau3AI GATC 2 cut(s) 187, 194
Sau96I GGNCC 1 cut(s) 68
ScaI AGTACT 1 cut(s) 26
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 2 cut(s) 72, 132
SduI GDGCHC 1 cut(s) 173
SetI ASST 5 cut(s) 61, 82, 149, 203, 209
SfaNI GCATC 1 cut(s) 217
SseBI AGGCCT 1 cut(s) 130
SsiI CCGC 3 cut(s) 92, 122, 151
StuI AGGCCT 1 cut(s) 130
StyD4I CCNGG 2 cut(s) 70, 130
TaiI ACGT 1 cut(s) 203
TatI WGTACW 1 cut(s) 24
TauI GCSGC 1 cut(s) 125
TseI GCWGC 1 cut(s) 62
XagI CCTNNNNNAGG 1 cut(s) 75
XmiI GTMKAC 1 cut(s) 13
ZrmI AGTACT 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.