Rh7AG372800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000693
Physical Location & Seq
Forward (+)
48154130 .. 48170466
16337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG372800.1

Sequence Viewer

Length: 249 bp
ATGGTCCAAGAAGAAGGATCGTGGGCGGCTTACATCGCAAACAAGTTCGCAGACGAAGATGACCTGAGCTCCCCAGCGGCGGAATCAGAAGAGGCGGACATGCCGGACGTTGCTTTTGGGTGTACGAGGAGGAGATCAGATGAGCGGTCTGACGGAGGAGCCTTTCCTGGTCGTGATCCTCTGCTTACGGAACTCTTGACCCTTAGAAAACCTCCGATCACTGGTTCTGTTCATTCAGGTATTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.85

Weight (kDa)

4.36

Isoelectric Point (pI)

76.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 145
AciI CCGC 5 cut(s) 26, 77, 80, 95, 145
AclWI GGATC 2 cut(s) 25, 170
AfaI GTAC 1 cut(s) 124
AfiI CCNNNNNNNGG 2 cut(s) 79, 221
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 1 cut(s) 69
AluI AGCT 1 cut(s) 69
Alw21I GWGCWC 1 cut(s) 71
AlwI GGATC 2 cut(s) 25, 170
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
AspS9I GGNCC 1 cut(s) 4
AvaII GGWCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 71
Bbv12I GWGCWC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 168
BisI GCNGC 2 cut(s) 27, 78
BlsI GCNGC 2 cut(s) 28, 79
Bme1390I CCNGG 1 cut(s) 168
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 160
BmrFI CCNGG 1 cut(s) 168
Bpu10I CCTNAGC 1 cut(s) 65
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 221
Bse1I ACTGG 1 cut(s) 226
BseBI CCWGG 1 cut(s) 168
BseLI CCNNNNNNNGG 2 cut(s) 79, 221
BseMII CTCAG 1 cut(s) 56
BseNI ACTGG 1 cut(s) 226
BseRI GAGGAG 3 cut(s) 142, 145, 171
BseYI CCCAGC 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 71
BsiSI CCGG 1 cut(s) 104
BslI CCNNNNNNNGG 2 cut(s) 79, 221
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 4 cut(s) 17, 134, 175, 216
BspACI CCGC 5 cut(s) 26, 77, 80, 95, 145
BspCNI CTCAG 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 160
BspPI GGATC 2 cut(s) 25, 170
BsrBI CCGCTC 1 cut(s) 145
BsrI ACTGG 1 cut(s) 226
BssMI GATC 4 cut(s) 17, 134, 175, 216
Bst2UI CCWGG 1 cut(s) 168
Bst6I CTCTTC 1 cut(s) 84
BstDEI CTNAG 2 cut(s) 65, 203
BstKTI GATC 4 cut(s) 20, 137, 178, 219
BstMBI GATC 4 cut(s) 17, 134, 175, 216
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 1 cut(s) 168
BstNSI RCATGY 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 166
BtgZI GCGATG 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 219
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 123
CviAII CATG 1 cut(s) 100
CviJI RGCY 3 cut(s) 29, 69, 161
CviKI_1 RGCY 3 cut(s) 29, 69, 161
CviQI GTAC 1 cut(s) 123
DdeI CTNAG 2 cut(s) 65, 203
DpnI GATC 4 cut(s) 19, 136, 177, 218
DpnII GATC 4 cut(s) 17, 134, 175, 216
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
EciI GGCGGA 2 cut(s) 95, 110
Ecl136II GAGCTC 1 cut(s) 69
Eco24I GRGCYC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 1 cut(s) 69
EcoICRI GAGCTC 1 cut(s) 69
EcoRII CCWGG 1 cut(s) 166
EcoT38I GRGCYC 1 cut(s) 71
FaeI CATG 1 cut(s) 103
FaiI YATR 1 cut(s) 101
FatI CATG 1 cut(s) 99
Fnu4HI GCNGC 2 cut(s) 27, 78
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 2 cut(s) 27, 78
GluI GCNGC 2 cut(s) 27, 78
GsaI CCCAGC 1 cut(s) 77
HapII CCGG 1 cut(s) 104
Hin1II CATG 1 cut(s) 103
HinfI GANTC 1 cut(s) 83
HpaII CCGG 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 123
Hpy188I TCNGA 4 cut(s) 88, 139, 151, 216
Hpy188III TCNNGA 2 cut(s) 173, 196
Hpy8I GTNNAC 1 cut(s) 123
HpyAV CCTTC 1 cut(s) 8
HpyCH4IV ACGT 1 cut(s) 108
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 2 cut(s) 65, 203
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 1 cut(s) 103
Kzo9I GATC 4 cut(s) 17, 134, 175, 216
LmnI GCTCC 2 cut(s) 74, 158
LpnPI CCDG 7 cut(s) 77, 87, 117, 153, 180, 207, 222
MaeII ACGT 1 cut(s) 108
MalI GATC 4 cut(s) 19, 136, 177, 218
MbiI CCGCTC 1 cut(s) 145
MboI GATC 4 cut(s) 17, 134, 175, 216
MboII GAAGA 3 cut(s) 23, 68, 101
MhlI GDGCHC 1 cut(s) 71
MnlI CCTC 6 cut(s) 85, 120, 123, 149, 189, 222
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 4 cut(s) 17, 134, 175, 216
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 1 cut(s) 160
NspI RCATGY 1 cut(s) 103
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 2 cut(s) 28, 79
Psp124BI GAGCTC 1 cut(s) 71
Psp6I CCWGG 1 cut(s) 166
PspFI CCCAGC 1 cut(s) 73
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 160
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
SacI GAGCTC 1 cut(s) 71
SatI GCNGC 2 cut(s) 27, 78
Sau3AI GATC 4 cut(s) 17, 134, 175, 216
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 1 cut(s) 71
SetI ASST 5 cut(s) 66, 71, 111, 214, 241
SinI GGWCC 1 cut(s) 4
SsiI CCGC 5 cut(s) 26, 77, 80, 95, 145
SstI GAGCTC 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 166
TaiI ACGT 1 cut(s) 111
TauI GCSGC 2 cut(s) 29, 80
TfiI GAWTC 1 cut(s) 83
TscAI CASTG 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 221
TspGWI ACGGA 2 cut(s) 168, 203
TspRI CASTG 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 4
XceI RCATGY 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.