Rh4AG281900

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000693
Physical Location & Seq
Reverse (-)
59705305 .. 59705804
500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG281900.1

Sequence Viewer

Length: 204 bp
ATGCGAGCTTTTGCACCAGCCTGTCCTGGGTTTCGTAAGGTAGATTTGGCAACCAATATTGCTGAGACGTCAGTGACAATACCTGGAATCAAGTATGTTATAGACACTGGGGTTGTAAAAGCACACTTCTGTAATCCAAACAAAGGGCTGGAACCTTTAATTGTTGTTCCAATTTCGAAAGCACAGGCTCTACAAAGGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000182 GO:0001817 GO:0001819 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003724 GO:0003725 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006356 GO:0006396 GO:0006412 GO:0006413 GO:0006518 GO:0006725 GO:0006807 GO:0008026 GO:0008134 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032479 GO:0032481 GO:0032991 GO:0033613 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042623 GO:0043021 GO:0043023 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043408 GO:0043410 GO:0043484 GO:0043565 GO:0043603 GO:0043604 GO:0044087 GO:0044089 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045937 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051090 GO:0051091 GO:0051092 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051174 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0060255 GO:0061702 GO:0065007 GO:0065009 GO:0070013 GO:0070035 GO:0071704 GO:0072559 GO:0080090 GO:0090304 GO:0097159 GO:0140098 GO:1900225 GO:1900227 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902531 GO:1902533 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 ko03050 ko05169 map03040 map03050 map05169
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

67

Amino Acids

7.23

Weight (kDa)

9.78

Isoelectric Point (pI)

33.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 71
AcyI GRCGYC 1 cut(s) 68
AfiI CCNNNNNNNGG 2 cut(s) 27, 143
AjnI CCWGG 2 cut(s) 25, 82
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 59
AsuII TTCGAA 1 cut(s) 176
BciT130I CCWGG 2 cut(s) 27, 84
BcoDI GTCTC 1 cut(s) 59
Bme1390I CCNGG 2 cut(s) 27, 84
BmiI GGNNCC 1 cut(s) 153
BmrFI CCNGG 2 cut(s) 27, 84
BmrI ACTGGG 1 cut(s) 117
BmuI ACTGGG 1 cut(s) 117
Bpu14I TTCGAA 1 cut(s) 176
BsaHI GRCGYC 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 143
Bse1I ACTGG 1 cut(s) 112
BseBI CCWGG 2 cut(s) 27, 84
BseDI CCNNGG 1 cut(s) 26
BseLI CCNNNNNNNGG 2 cut(s) 27, 143
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 112
BslI CCNNNNNNNGG 2 cut(s) 27, 143
BsmAI GTCTC 1 cut(s) 59
BsmBI CGTCTC 1 cut(s) 59
Bsp119I TTCGAA 1 cut(s) 176
BspCNI CTCAG 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 153
BspT104I TTCGAA 1 cut(s) 176
BsrI ACTGG 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 26
BssNI GRCGYC 1 cut(s) 68
Bst2UI CCWGG 2 cut(s) 27, 84
BstACI GRCGYC 1 cut(s) 68
BstBI TTCGAA 1 cut(s) 176
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 63
BstMAI GTCTC 1 cut(s) 59
BstNI CCWGG 2 cut(s) 27, 84
BstSCI CCNGG 2 cut(s) 25, 82
BtsIMutI CAGTG 2 cut(s) 78, 105
Cac8I GCNNGC 1 cut(s) 6
CviJI RGCY 4 cut(s) 8, 20, 148, 188
CviKI_1 RGCY 4 cut(s) 8, 20, 148, 188
DdeI CTNAG 1 cut(s) 63
EcoRII CCWGG 2 cut(s) 25, 82
Esp3I CGTCTC 1 cut(s) 59
FaiI YATR 2 cut(s) 96, 101
Hin1I GRCGYC 1 cut(s) 68
HinfI GANTC 1 cut(s) 87
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 1 cut(s) 14
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 1 cut(s) 68
Hsp92I GRCGYC 1 cut(s) 68
LpnPI CCDG 9 cut(s) 12, 30, 34, 39, 69, 93, 96, 134, 170
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 73
MluCI AATT 2 cut(s) 159, 171
MnlI CCTC 1 cut(s) 192
MseI TTAA 1 cut(s) 158
MspR9I CCNGG 2 cut(s) 27, 84
MvaI CCWGG 2 cut(s) 27, 84
NlaIV GGNNCC 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 73
NspV TTCGAA 1 cut(s) 176
PfeI GAWTC 1 cut(s) 87
Psp6I CCWGG 2 cut(s) 25, 82
PspGI CCWGG 2 cut(s) 25, 82
PspN4I GGNNCC 1 cut(s) 153
SaqAI TTAA 1 cut(s) 158
ScrFI CCNGG 2 cut(s) 27, 84
SetI ASST 6 cut(s) 10, 42, 71, 85, 157, 203
SfuI TTCGAA 1 cut(s) 176
Sse9I AATT 2 cut(s) 159, 171
SspI AATATT 1 cut(s) 58
StyD4I CCNGG 2 cut(s) 25, 82
TaiI ACGT 1 cut(s) 71
TaqI TCGA 1 cut(s) 176
TasI AATT 2 cut(s) 159, 171
TfiI GAWTC 1 cut(s) 87
Tru1I TTAA 1 cut(s) 158
Tru9I TTAA 1 cut(s) 158
TscAI CASTG 2 cut(s) 78, 112
TseFI GTSAC 1 cut(s) 73
Tsp45I GTSAC 1 cut(s) 73
TspRI CASTG 2 cut(s) 78, 112
ZraI GACGTC 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.