Rmu_sc0009346.1_g000015

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009346.1
OG0000693
Physical Location & Seq
Forward (+)
44612 .. 47084
2473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009346.1_g000015.1.cds

Sequence Viewer

Length: 690 bp
atgaatcatgattctcacaatctcacaaactctttctgggttttcactttccagtcaaaggctccggctcttcactcttggtttgctcgctttgactcctcttcaagctgtcaagcaacaaagcagaagactttggttcaatttctgcggctcttcactcttggtttactcgctttgactcctcttcaagctgtcaagcaacaaagcagaagactttggttcaatttctgggttcttccttcaagctcaattcacctggaggaagaagctggtgacctacttgtcttcttgacaggtaaagacgaaattgaattcgtagaaagacttattgaagaaaaacttgaacagttaccggagaatagtaaaaaattagtagcggtacctttattttcatctcttccgttagaacagcaaatgcgagcttttgcaccagcctgtcctgggtttcgtaaggaattaaagcagtatcccactttggaagttgggaatgcaagatttgaatcgctggataggataaaagaagagagcaaggaagcaactatgcaactagttgatatggagtgtggttacctcaccgttgaatttttccgcaagcttcctcaggatattgaaaaggggggacatatgtatcagctgcatagttggttacatattgaaaagggggcacatatgtatcagctgcatagttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000182 GO:0001817 GO:0001819 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003724 GO:0003725 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006356 GO:0006396 GO:0006412 GO:0006413 GO:0006518 GO:0006725 GO:0006807 GO:0008026 GO:0008134 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032479 GO:0032481 GO:0032991 GO:0033613 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042623 GO:0043021 GO:0043023 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043408 GO:0043410 GO:0043484 GO:0043565 GO:0043603 GO:0043604 GO:0044087 GO:0044089 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045937 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051090 GO:0051091 GO:0051092 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051174 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0060255 GO:0061702 GO:0065007 GO:0065009 GO:0070013 GO:0070035 GO:0071704 GO:0072559 GO:0080090 GO:0090304 GO:0097159 GO:0140098 GO:1900225 GO:1900227 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902531 GO:1902533 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 ko03050 ko05169 map03040 map03050 map05169
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

229

Amino Acids

26.58

Weight (kDa)

6.31

Isoelectric Point (pI)

64.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 281
Acc65I GGTACC 1 cut(s) 379
AccB1I GGYRCC 1 cut(s) 379
AciI CCGC 3 cut(s) 148, 377, 589
AcsI RAATTY 2 cut(s) 311, 581
AfaI GTAC 1 cut(s) 381
AfiI CCNNNNNNNGG 2 cut(s) 58, 441
AhlI ACTAGT 1 cut(s) 547
AjnI CCWGG 2 cut(s) 255, 439
AluBI AGCT 8 cut(s) 108, 191, 246, 269, 422, 595, 634, 679
AluI AGCT 8 cut(s) 108, 191, 246, 269, 422, 595, 634, 679
ApeKI GCWGC 2 cut(s) 634, 679
ApoI RAATTY 2 cut(s) 311, 581
Asp718I GGTACC 1 cut(s) 379
AsuHPI GGTGA 3 cut(s) 245, 284, 565
AxyI CCTNAGG 1 cut(s) 600
BaeGI GKGCMC 1 cut(s) 667
BaeI ACNNNNGTAYC 4 cut(s) 611, 644, 656, 689
BanI GGYRCC 1 cut(s) 379
BbsI GAAGAC 3 cut(s) 134, 217, 277
BbvI GCAGC 2 cut(s) 621, 666
BciT130I CCWGG 2 cut(s) 257, 441
BciVI GTATCC 1 cut(s) 477
BcuI ACTAGT 1 cut(s) 547
BfaI CTAG 1 cut(s) 548
BfuI GTATCC 1 cut(s) 477
BisI GCNGC 3 cut(s) 149, 635, 680
BlsI GCNGC 3 cut(s) 150, 636, 681
Bme1390I CCNGG 2 cut(s) 257, 441
BmiI GGNNCC 2 cut(s) 63, 381
BmrFI CCNGG 2 cut(s) 257, 441
BpiI GAAGAC 3 cut(s) 134, 217, 277
BpmI CTGGAG 1 cut(s) 278
BsaBI GATNNNNATC 1 cut(s) 499
BsaJI CCNNGG 1 cut(s) 440
BsaWI WCCGGW 1 cut(s) 352
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 441
Bse1I ACTGG 1 cut(s) 52
Bse21I CCTNAGG 1 cut(s) 600
Bse8I GATNNNNATC 1 cut(s) 499
BseBI CCWGG 2 cut(s) 257, 441
BseDI CCNNGG 1 cut(s) 440
BseJI GATNNNNATC 1 cut(s) 499
BseLI CCNNNNNNNGG 2 cut(s) 58, 441
BseMII CTCAG 1 cut(s) 614
BseNI ACTGG 1 cut(s) 52
BseRI GAGGAG 2 cut(s) 88, 171
BseSI GKGCMC 1 cut(s) 667
BseXI GCAGC 2 cut(s) 621, 666
BshNI GGYRCC 1 cut(s) 379
BsiSI CCGG 2 cut(s) 65, 353
BslFI GGGAC 1 cut(s) 633
BslI CCNNNNNNNGG 2 cut(s) 58, 441
BsmFI GGGAC 1 cut(s) 633
BsmI GAATGC 1 cut(s) 493
Bsp1286I GDGCHC 1 cut(s) 667
BspACI CCGC 3 cut(s) 148, 377, 589
BspCNI CTCAG 1 cut(s) 613
BspHI TCATGA 1 cut(s) 7
BspLI GGNNCC 2 cut(s) 63, 381
BspQI GCTCTTC 2 cut(s) 75, 158
BspT107I GGYRCC 1 cut(s) 379
BsrI ACTGG 1 cut(s) 52
BssECI CCNNGG 1 cut(s) 440
Bst2UI CCWGG 2 cut(s) 257, 441
Bst4CI ACNGT 2 cut(s) 348, 577
Bst6I CTCTTC 6 cut(s) 75, 106, 158, 189, 402, 516
BstC8I GCNNGC 3 cut(s) 88, 420, 593
BstDEI CTNAG 1 cut(s) 600
BstEII GGTNACC 2 cut(s) 272, 566
BstNI CCWGG 2 cut(s) 257, 441
BstPI GGTNACC 2 cut(s) 272, 566
BstSCI CCNGG 2 cut(s) 255, 439
BstSLI GKGCMC 1 cut(s) 667
BstV1I GCAGC 2 cut(s) 621, 666
BstV2I GAAGAC 3 cut(s) 134, 217, 277
Bsu36I CCTNAGG 1 cut(s) 600
BsuI GTATCC 1 cut(s) 477
Cac8I GCNNGC 3 cut(s) 88, 420, 593
CciI TCATGA 1 cut(s) 7
Csp6I GTAC 1 cut(s) 380
CviAII CATG 1 cut(s) 8
CviQI GTAC 1 cut(s) 380
DdeI CTNAG 1 cut(s) 600
DrdI GACNNNNNNGTC 1 cut(s) 281
DseDI GACNNNNNNGTC 1 cut(s) 281
Eam1104I CTCTTC 6 cut(s) 75, 106, 158, 189, 402, 516
EarI CTCTTC 6 cut(s) 75, 106, 158, 189, 402, 516
Eco81I CCTNAGG 1 cut(s) 600
Eco91I GGTNACC 2 cut(s) 272, 566
EcoO65I GGTNACC 2 cut(s) 272, 566
EcoRI GAATTC 1 cut(s) 311
EcoRII CCWGG 2 cut(s) 255, 439
FaeI CATG 1 cut(s) 11
FalI AAGNNNNNCTT 2 cut(s) 324, 356
FaqI GGGAC 1 cut(s) 633
FatI CATG 1 cut(s) 7
FauNDI CATATG 2 cut(s) 624, 669
Fnu4HI GCNGC 3 cut(s) 149, 635, 680
Fsp4HI GCNGC 3 cut(s) 149, 635, 680
FspBI CTAG 1 cut(s) 548
GluI GCNGC 3 cut(s) 149, 635, 680
GsuI CTGGAG 1 cut(s) 278
HapII CCGG 2 cut(s) 65, 353
Hin1II CATG 1 cut(s) 11
HindIII AAGCTT 1 cut(s) 593
HinfI GANTC 5 cut(s) 4, 11, 95, 178, 500
HpaII CCGG 2 cut(s) 65, 353
HphI GGTGA 3 cut(s) 245, 284, 565
Hpy166II GTNNAC 1 cut(s) 167
Hpy188III TCNNGA 3 cut(s) 8, 289, 602
Hpy8I GTNNAC 1 cut(s) 167
HpyAV CCTTC 1 cut(s) 249
HpyCH4III ACNGT 2 cut(s) 348, 577
HpyCH4V TGCA 5 cut(s) 428, 491, 544, 637, 682
HpyF3I CTNAG 1 cut(s) 600
Hsp92II CATG 1 cut(s) 11
KpnI GGTACC 1 cut(s) 383
LguI GCTCTTC 2 cut(s) 75, 158
LmnI GCTCC 1 cut(s) 67
Lsp1109I GCAGC 2 cut(s) 621, 666
MaeI CTAG 1 cut(s) 548
MaeIII GTNAC 4 cut(s) 272, 348, 566, 645
MhlI GDGCHC 1 cut(s) 667
MluCI AATT 8 cut(s) 140, 223, 249, 306, 311, 368, 455, 581
MlyI GAGTC 2 cut(s) 89, 172
MnlI CCTC 5 cut(s) 109, 192, 253, 581, 609
MseI TTAA 1 cut(s) 458
MspA1I CMGCKG 2 cut(s) 634, 679
MspI CCGG 2 cut(s) 65, 353
MspR9I CCNGG 2 cut(s) 257, 441
Mva1269I GAATGC 1 cut(s) 493
MvaI CCWGG 2 cut(s) 257, 441
NdeI CATATG 2 cut(s) 624, 669
NlaIII CATG 1 cut(s) 11
NlaIV GGNNCC 2 cut(s) 63, 381
NmuCI GTSAC 1 cut(s) 272
PagI TCATGA 1 cut(s) 7
PciSI GCTCTTC 2 cut(s) 75, 158
PctI GAATGC 1 cut(s) 493
PfeI GAWTC 3 cut(s) 4, 11, 500
PkrI GCNGC 3 cut(s) 150, 636, 681
PleI GAGTC 2 cut(s) 89, 172
PpsI GAGTC 2 cut(s) 89, 172
Psp6I CCWGG 2 cut(s) 255, 439
PspEI GGTNACC 2 cut(s) 272, 566
PspGI CCWGG 2 cut(s) 255, 439
PspN4I GGNNCC 2 cut(s) 63, 381
PvuII CAGCTG 2 cut(s) 634, 679
RsaI GTAC 1 cut(s) 381
RsaNI GTAC 1 cut(s) 380
SapI GCTCTTC 2 cut(s) 75, 158
SaqAI TTAA 1 cut(s) 458
SatI GCNGC 3 cut(s) 149, 635, 680
SchI GAGTC 2 cut(s) 89, 172
ScrFI CCNGG 2 cut(s) 257, 441
SduI GDGCHC 1 cut(s) 667
SpeI ACTAGT 1 cut(s) 547
Sse9I AATT 8 cut(s) 140, 223, 249, 306, 311, 368, 455, 581
SsiI CCGC 3 cut(s) 148, 377, 589
SspMI CTAG 1 cut(s) 548
StyD4I CCNGG 2 cut(s) 255, 439
TaaI ACNGT 2 cut(s) 348, 577
TasI AATT 8 cut(s) 140, 223, 249, 306, 311, 368, 455, 581
TauI GCSGC 1 cut(s) 151
TfiI GAWTC 3 cut(s) 4, 11, 500
Tru1I TTAA 1 cut(s) 458
Tru9I TTAA 1 cut(s) 458
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 2 cut(s) 634, 679
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 2 cut(s) 17, 381
TspGWI ACGGA 1 cut(s) 390
XapI RAATTY 2 cut(s) 311, 581
XspI CTAG 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.