Rroxscaffold_7G00186730

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000693
Physical Location & Seq
Forward (+)
26056500 .. 26057304
805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00186730.1

Sequence Viewer

Length: 234 bp
ATGCAGCTTCTCGGCCTCCTAGCGCCTTCCACGATTCACCTGGAGGAAGAAGCTGGTGACATACTTGTCTTCTTGACGGGTAAAGACGAAATTGAATTTGTAGAAAGACTTATCAAAGAAAAACTTAAACAGTTACCGGAGAATAATCAAAAACTAGTAGCGGTACCTTTATTTTCATCTCTTCCGTCGAAACAGCAAATGCGAGCTTTTGCACCACTGTCCCGGGTTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000182 GO:0001817 GO:0001819 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003724 GO:0003725 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006356 GO:0006396 GO:0006412 GO:0006413 GO:0006518 GO:0006725 GO:0006807 GO:0008026 GO:0008134 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032479 GO:0032481 GO:0032991 GO:0033613 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042623 GO:0043021 GO:0043023 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043408 GO:0043410 GO:0043484 GO:0043565 GO:0043603 GO:0043604 GO:0044087 GO:0044089 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045937 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051090 GO:0051091 GO:0051092 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051174 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0060255 GO:0061702 GO:0065007 GO:0065009 GO:0070013 GO:0070035 GO:0071704 GO:0072559 GO:0080090 GO:0090304 GO:0097159 GO:0140098 GO:1900225 GO:1900227 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902531 GO:1902533 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 ko03050 ko05169 map03040 map03050 map05169
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

77

Amino Acids

8.65

Weight (kDa)

5.75

Isoelectric Point (pI)

54.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 65
Acc65I GGTACC 1 cut(s) 163
AccB1I GGYRCC 1 cut(s) 163
AciI CCGC 1 cut(s) 161
AcsI RAATTY 1 cut(s) 95
AfaI GTAC 1 cut(s) 165
AgsI TTSAA 1 cut(s) 95
AhlI ACTAGT 1 cut(s) 154
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 3 cut(s) 7, 53, 206
AluI AGCT 3 cut(s) 7, 53, 206
Ama87I CYCGRG 1 cut(s) 222
AoxI GGCC 1 cut(s) 13
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 95
Asp718I GGTACC 1 cut(s) 163
AspLEI GCGC 1 cut(s) 25
AsuC2I CCSGG 2 cut(s) 223, 224
AsuHPI GGTGA 2 cut(s) 29, 68
AvaI CYCGRG 1 cut(s) 222
BanI GGYRCC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 61
BbvI GCAGC 1 cut(s) 16
BciT130I CCWGG 1 cut(s) 41
BcnI CCSGG 2 cut(s) 223, 224
BcuI ACTAGT 1 cut(s) 154
BfaI CTAG 2 cut(s) 20, 155
BfoI RGCGCY 1 cut(s) 26
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 3 cut(s) 41, 223, 224
BmeT110I CYCGRG 1 cut(s) 222
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 3 cut(s) 41, 223, 224
BpiI GAAGAC 1 cut(s) 61
BpmI CTGGAG 1 cut(s) 62
BpuMI CCSGG 2 cut(s) 223, 224
BsaJI CCNNGG 1 cut(s) 222
BsaWI WCCGGW 1 cut(s) 136
BseBI CCWGG 1 cut(s) 41
BseDI CCNNGG 1 cut(s) 222
BseXI GCAGC 1 cut(s) 16
BshFI GGCC 1 cut(s) 15
BshNI GGYRCC 1 cut(s) 163
BsiHKCI CYCGRG 1 cut(s) 222
BsiSI CCGG 2 cut(s) 137, 223
BslFI GGGAC 1 cut(s) 205
BsmFI GGGAC 1 cut(s) 205
BsnI GGCC 1 cut(s) 15
BsoBI CYCGRG 1 cut(s) 222
BspACI CCGC 1 cut(s) 161
BspANI GGCC 1 cut(s) 15
BspLI GGNNCC 1 cut(s) 165
BspT107I GGYRCC 1 cut(s) 163
BssECI CCNNGG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 2 cut(s) 132, 219
Bst6I CTCTTC 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 204
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 1 cut(s) 25
BstNI CCWGG 1 cut(s) 41
BstSCI CCNGG 3 cut(s) 39, 221, 222
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 61
BsuRI GGCC 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 215
Cac8I GCNNGC 1 cut(s) 204
CfoI GCGC 1 cut(s) 25
Cfr9I CCCGGG 1 cut(s) 222
Csp6I GTAC 1 cut(s) 164
CviJI RGCY 4 cut(s) 7, 15, 53, 206
CviKI_1 RGCY 4 cut(s) 7, 15, 53, 206
CviQI GTAC 1 cut(s) 164
DrdI GACNNNNNNGTC 1 cut(s) 65
DseDI GACNNNNNNGTC 1 cut(s) 65
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco88I CYCGRG 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 39
FaiI YATR 1 cut(s) 62
FalI AAGNNNNNCTT 2 cut(s) 108, 140
FaqI GGGAC 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 5
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 2 cut(s) 20, 155
GlaI GCGC 1 cut(s) 24
GluI GCNGC 1 cut(s) 5
GsuI CTGGAG 1 cut(s) 62
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 1 cut(s) 15
HapII CCGG 2 cut(s) 137, 223
HhaI GCGC 1 cut(s) 25
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HinfI GANTC 1 cut(s) 34
HpaII CCGG 2 cut(s) 137, 223
HphI GGTGA 2 cut(s) 29, 68
Hpy188III TCNNGA 1 cut(s) 73
Hpy99I CGWCG 1 cut(s) 190
HpyAV CCTTC 1 cut(s) 36
HpyCH4III ACNGT 2 cut(s) 132, 219
HpyCH4V TGCA 2 cut(s) 4, 212
HspAI GCGC 1 cut(s) 23
KpnI GGTACC 1 cut(s) 167
LpnPI CCDG 4 cut(s) 26, 39, 53, 150
Lsp1109I GCAGC 1 cut(s) 16
MaeI CTAG 2 cut(s) 20, 155
MaeIII GTNAC 2 cut(s) 56, 132
MboII GAAGA 3 cut(s) 59, 61, 173
MluCI AATT 2 cut(s) 90, 95
MnlI CCTC 2 cut(s) 26, 37
MseI TTAA 1 cut(s) 126
MspI CCGG 2 cut(s) 137, 223
MspR9I CCNGG 3 cut(s) 41, 223, 224
MvaI CCWGG 1 cut(s) 41
NciI CCSGG 2 cut(s) 223, 224
NlaIV GGNNCC 1 cut(s) 165
NmuCI GTSAC 1 cut(s) 56
PfeI GAWTC 1 cut(s) 34
PkrI GCNGC 1 cut(s) 6
Psp6I CCWGG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 165
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 1 cut(s) 5
ScrFI CCNGG 3 cut(s) 41, 223, 224
SetI ASST 5 cut(s) 9, 42, 55, 169, 208
SmaI CCCGGG 1 cut(s) 224
SpeI ACTAGT 1 cut(s) 154
Sse9I AATT 2 cut(s) 90, 95
SsiI CCGC 1 cut(s) 161
SspMI CTAG 2 cut(s) 20, 155
StyD4I CCNGG 3 cut(s) 39, 221, 222
TaaI ACNGT 2 cut(s) 132, 219
TaqI TCGA 1 cut(s) 188
TasI AATT 2 cut(s) 90, 95
TfiI GAWTC 1 cut(s) 34
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 1 cut(s) 222
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 165
TspGWI ACGGA 1 cut(s) 174
TspMI CCCGGG 1 cut(s) 222
TspRI CASTG 1 cut(s) 222
XapI RAATTY 1 cut(s) 95
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XmaI CCCGGG 1 cut(s) 222
XspI CTAG 2 cut(s) 20, 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.