Rw2G018220
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000693
Physical Location & Seq
Reverse (-)
23288078 .. 23289916
1839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G018220.1

Sequence Viewer

Length: 231 bp
ATGCAAGCTTTTGCACCAGCCTGTCCTGGGTTTCTTAAGGAATTAAAGCAGTATCCCACTTTGGAAGTTGGGAATGCAAGATTTGAATCGCTGGATAGGATGAAAGAAGAGAGCAAGGAAGCAACTATGCAGCTAGTTGATATGGAGTGTGGTTACCTCACCGTTGAATTTTTCCGCAAGCTTCCTCAGGATATTGAAAAGGGGGGACATATGTATCAGCTGCGCGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

76

Amino Acids

8.79

Weight (kDa)

5.33

Isoelectric Point (pI)

50.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 225
AciI CCGC 1 cut(s) 175
AcsI RAATTY 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 27
AflII CTTAAG 1 cut(s) 35
AgsI TTSAA 3 cut(s) 86, 167, 197
AjnI CCWGG 1 cut(s) 25
AluBI AGCT 4 cut(s) 8, 133, 181, 220
AluI AGCT 4 cut(s) 8, 133, 181, 220
ApeKI GCWGC 2 cut(s) 130, 220
ApoI RAATTY 1 cut(s) 167
AspLEI GCGC 2 cut(s) 225, 227
AsuHPI GGTGA 1 cut(s) 151
AxyI CCTNAGG 1 cut(s) 186
BaeI ACNNNNGTAYC 2 cut(s) 197, 230
BbvI GCAGC 2 cut(s) 142, 207
BciT130I CCWGG 1 cut(s) 27
BciVI GTATCC 1 cut(s) 63
BfaI CTAG 1 cut(s) 134
BfrI CTTAAG 1 cut(s) 35
BfuI GTATCC 1 cut(s) 63
BisI GCNGC 2 cut(s) 131, 221
BlsI GCNGC 2 cut(s) 132, 222
Bme1390I CCNGG 1 cut(s) 27
BmrFI CCNGG 1 cut(s) 27
BsaBI GATNNNNATC 1 cut(s) 85
BsaJI CCNNGG 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 27
Bse21I CCTNAGG 1 cut(s) 186
Bse8I GATNNNNATC 1 cut(s) 85
BseBI CCWGG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 1 cut(s) 105
BseJI GATNNNNATC 1 cut(s) 85
BseLI CCNNNNNNNGG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 200
BsePI GCGCGC 1 cut(s) 223
BseXI GCAGC 2 cut(s) 142, 207
Bsh1236I CGCG 1 cut(s) 225
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 219
BsmI GAATGC 1 cut(s) 79
BspACI CCGC 1 cut(s) 175
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 1 cut(s) 225
BspTI CTTAAG 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 26
BssHII GCGCGC 1 cut(s) 223
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 163
Bst6I CTCTTC 1 cut(s) 102
BstAFI CTTAAG 1 cut(s) 35
BstC8I GCNNGC 3 cut(s) 6, 179, 225
BstDEI CTNAG 1 cut(s) 186
BstEII GGTNACC 1 cut(s) 152
BstF5I GGATG 1 cut(s) 105
BstFNI CGCG 1 cut(s) 225
BstHHI GCGC 2 cut(s) 225, 227
BstNI CCWGG 1 cut(s) 27
BstPI GGTNACC 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 25
BstUI CGCG 1 cut(s) 225
BstV1I GCAGC 2 cut(s) 142, 207
Bsu36I CCTNAGG 1 cut(s) 186
BsuI GTATCC 1 cut(s) 63
BtsCI GGATG 1 cut(s) 105
Cac8I GCNNGC 3 cut(s) 6, 179, 225
CfoI GCGC 2 cut(s) 225, 227
CviJI RGCY 5 cut(s) 8, 20, 133, 181, 220
CviKI_1 RGCY 5 cut(s) 8, 20, 133, 181, 220
DdeI CTNAG 1 cut(s) 186
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco81I CCTNAGG 1 cut(s) 186
Eco91I GGTNACC 1 cut(s) 152
EcoO65I GGTNACC 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 25
FaiI YATR 5 cut(s) 128, 143, 210, 212, 229
FaqI GGGAC 1 cut(s) 219
FauNDI CATATG 1 cut(s) 210
Fnu4HI GCNGC 2 cut(s) 131, 221
FokI GGATG 1 cut(s) 112
Fsp4HI GCNGC 2 cut(s) 131, 221
FspBI CTAG 1 cut(s) 134
GlaI GCGC 2 cut(s) 224, 226
GluI GCNGC 2 cut(s) 131, 221
HhaI GCGC 2 cut(s) 225, 227
Hin6I GCGC 2 cut(s) 223, 225
HinP1I GCGC 2 cut(s) 223, 225
HindIII AAGCTT 2 cut(s) 6, 179
HinfI GANTC 1 cut(s) 86
HphI GGTGA 1 cut(s) 151
Hpy188III TCNNGA 1 cut(s) 188
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4V TGCA 4 cut(s) 4, 14, 77, 130
HpyF3I CTNAG 1 cut(s) 186
HspAI GCGC 2 cut(s) 223, 225
LpnPI CCDG 6 cut(s) 12, 30, 34, 39, 77, 173
Lsp1109I GCAGC 2 cut(s) 142, 207
MaeI CTAG 1 cut(s) 134
MaeIII GTNAC 1 cut(s) 152
MboII GAAGA 1 cut(s) 119
MluCI AATT 2 cut(s) 41, 167
MnlI CCTC 2 cut(s) 167, 195
MseI TTAA 2 cut(s) 36, 44
MspA1I CMGCKG 1 cut(s) 220
MspCI CTTAAG 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 27
Mva1269I GAATGC 1 cut(s) 79
MvaI CCWGG 1 cut(s) 27
MvnI CGCG 1 cut(s) 225
NdeI CATATG 1 cut(s) 210
PauI GCGCGC 1 cut(s) 223
PctI GAATGC 1 cut(s) 79
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 2 cut(s) 132, 222
Psp6I CCWGG 1 cut(s) 25
PspEI GGTNACC 1 cut(s) 152
PspGI CCWGG 1 cut(s) 25
PteI GCGCGC 1 cut(s) 223
PvuII CAGCTG 1 cut(s) 220
SaqAI TTAA 2 cut(s) 36, 44
SatI GCNGC 2 cut(s) 131, 221
ScrFI CCNGG 1 cut(s) 27
SetI ASST 5 cut(s) 10, 135, 159, 183, 222
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
Sse9I AATT 2 cut(s) 41, 167
SsiI CCGC 1 cut(s) 175
SspMI CTAG 1 cut(s) 134
StyD4I CCNGG 1 cut(s) 25
TaaI ACNGT 1 cut(s) 163
TasI AATT 2 cut(s) 41, 167
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 2 cut(s) 36, 44
Tru9I TTAA 2 cut(s) 36, 44
TseI GCWGC 2 cut(s) 130, 220
TspDTI ATGAA 1 cut(s) 116
Vha464I CTTAAG 1 cut(s) 35
XapI RAATTY 1 cut(s) 167
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.