Rroxscaffold_4G00332500
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000693
Physical Location & Seq
Forward (+)
66654642 .. 66656642
2001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00332500.1

Sequence Viewer

Length: 270 bp
ATGCGGGGTCCCCATCACTCTGAGCGCAAGGTTCATGCCTTATTGAAGGAGCTGGCTCAGAAGTCTTTCAATGCGACCTTGGAATTAAAGCAGTATCCCACTTTAAGATTGGAAGTTGGGAATGCAAGATTTGAATCGCTGGATAGAATGAAAGAAGAGAGCAAGGAAGCAACTATGCAGCTAATCCATGAGGAGACACATATCCTAGAATCACTTCTTGCTTCAGATCTTCCTCTGATGAAAATTCAGTCTTGGGTGATAGATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

89

Amino Acids

10.38

Weight (kDa)

6.19

Isoelectric Point (pI)

35.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 4
AcsI RAATTY 1 cut(s) 243
AcuI CTGAAG 1 cut(s) 207
AgsI TTSAA 3 cut(s) 46, 70, 134
AluBI AGCT 2 cut(s) 52, 181
AluI AGCT 2 cut(s) 52, 181
Alw26I GTCTC 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 178
ApoI RAATTY 1 cut(s) 243
Asp700I GAANNNNTTC 2 cut(s) 65, 213
AspLEI GCGC 1 cut(s) 27
AspS9I GGNCC 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 268
AvaII GGWCC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 190
BccI CCATC 1 cut(s) 21
BciVI GTATCC 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 1 cut(s) 206
BfuI GTATCC 1 cut(s) 105
BglII AGATCT 1 cut(s) 226
BisI GCNGC 1 cut(s) 179
BlsI GCNGC 1 cut(s) 180
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 2 cut(s) 9, 10
BsaBI GATNNNNATC 1 cut(s) 133
BsaJI CCNNGG 1 cut(s) 78
Bse8I GATNNNNATC 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 78
BseJI GATNNNNATC 1 cut(s) 133
BseMII CTCAG 2 cut(s) 12, 71
BseRI GAGGAG 1 cut(s) 206
BseXI GCAGC 1 cut(s) 190
BsmAI GTCTC 1 cut(s) 188
BsmI GAATGC 1 cut(s) 127
Bsp143I GATC 1 cut(s) 226
BspACI CCGC 1 cut(s) 4
BspCNI CTCAG 2 cut(s) 13, 70
BspLI GGNNCC 2 cut(s) 9, 10
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 1 cut(s) 226
BssT1I CCWWGG 1 cut(s) 78
Bst6I CTCTTC 1 cut(s) 150
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 2 cut(s) 21, 57
BstHHI GCGC 1 cut(s) 27
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 1 cut(s) 226
BstV1I GCAGC 1 cut(s) 190
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BsuI GTATCC 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 54
CfoI GCGC 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 8
CviAII CATG 2 cut(s) 35, 188
CviJI RGCY 3 cut(s) 52, 56, 181
CviKI_1 RGCY 3 cut(s) 52, 56, 181
DdeI CTNAG 2 cut(s) 21, 57
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 207
EcoO109I RGGNCCY 1 cut(s) 8
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 2 cut(s) 38, 191
FaiI YATR 4 cut(s) 36, 176, 189, 201
FatI CATG 2 cut(s) 34, 187
Fnu4HI GCNGC 1 cut(s) 179
Fsp4HI GCNGC 1 cut(s) 179
FspBI CTAG 1 cut(s) 206
GlaI GCGC 1 cut(s) 26
GluI GCNGC 1 cut(s) 179
HhaI GCGC 1 cut(s) 27
Hin1II CATG 2 cut(s) 38, 191
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HinfI GANTC 2 cut(s) 134, 209
HphI GGTGA 1 cut(s) 268
Hpy188I TCNGA 5 cut(s) 22, 60, 226, 237, 269
HpyAV CCTTC 1 cut(s) 40
HpyCH4V TGCA 2 cut(s) 125, 178
HpyF3I CTNAG 2 cut(s) 21, 57
Hsp92II CATG 2 cut(s) 38, 191
HspAI GCGC 1 cut(s) 25
KflI GGGWCCC 1 cut(s) 8
Kzo9I GATC 1 cut(s) 226
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 2 cut(s) 38, 125
Lsp1109I GCAGC 1 cut(s) 190
MaeI CTAG 1 cut(s) 206
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 2 cut(s) 167, 221
MflI RGATCY 1 cut(s) 226
MluCI AATT 2 cut(s) 83, 243
MnlI CCTC 2 cut(s) 184, 243
MroXI GAANNNNTTC 2 cut(s) 65, 213
MseI TTAA 2 cut(s) 86, 104
Mva1269I GAATGC 1 cut(s) 127
NdeII GATC 1 cut(s) 226
NlaIII CATG 2 cut(s) 38, 191
NlaIV GGNNCC 2 cut(s) 9, 10
PctI GAATGC 1 cut(s) 127
PdmI GAANNNNTTC 2 cut(s) 65, 213
PfeI GAWTC 2 cut(s) 134, 209
PkrI GCNGC 1 cut(s) 180
PpuMI RGGWCCY 1 cut(s) 8
Psp5II RGGWCCY 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 9, 10
PspPI GGNCC 1 cut(s) 8
PspPPI RGGWCCY 1 cut(s) 8
PsuI RGATCY 1 cut(s) 226
SaqAI TTAA 2 cut(s) 86, 104
SatI GCNGC 1 cut(s) 179
Sau3AI GATC 1 cut(s) 226
Sau96I GGNCC 1 cut(s) 8
SetI ASST 4 cut(s) 33, 54, 80, 183
SinI GGWCC 1 cut(s) 8
Sse9I AATT 2 cut(s) 83, 243
SsiI CCGC 1 cut(s) 4
SspMI CTAG 1 cut(s) 206
StyI CCWWGG 1 cut(s) 78
TasI AATT 2 cut(s) 83, 243
TfiI GAWTC 2 cut(s) 134, 209
Tru1I TTAA 2 cut(s) 86, 104
Tru9I TTAA 2 cut(s) 86, 104
TseI GCWGC 1 cut(s) 178
TspDTI ATGAA 3 cut(s) 23, 164, 254
VpaK11BI GGWCC 1 cut(s) 8
XapI RAATTY 1 cut(s) 243
XcmI CCANNNNNNNNNTGG 1 cut(s) 106
XmnI GAANNNNTTC 2 cut(s) 65, 213
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.