Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000693

Physical Location & Seq

Genomic Coordinates Forward (+)

41090459 .. 41090728

Gene Structure 270 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG326300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGATAGCGTCAGAGAACAGTGACGGTGTTGTGGACGAGAAAGAAGAAGACCCGATCTTCTCCTTCAACTACGACGATGGCGTTGTGAATGAGAAAGAAGAAGACCCGATCCAGGAACCCGCTCTCCTCCGCTGCCGCCCTACACGGCTTCATCTCCTCCATCTGACCCTATGCCGCAGCCCCGCCCTGTGGTGCTCCATGGTCGTCTCGACCTCGTCGACTCGGGTGCCAACCTCTGTGGCCTTCTTCCTTATCGAGGCTGCCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

89

Amino Acids

9.99

Weight (kDa)

4.48

Isoelectric Point (pI)

59.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g37570 FvH4_6g37570 FvH4_6g37570
pyrus_communis	pycom13g05420
rosa_chinensis	RchiOBHm_Chr1g0325471 RchiOBHm_Chr1g0343781 RchiOBHm_Chr7g0185751 RchiOBHm_Chr7g0214791 RchiOBHm_Chr7g0230311
rosa_laevigata	RLG00000007418 RLG00000007555 RLG00000018106 RLG00000023913 RLG00000029245 RLG00000032850
rosa_multiflora	Rmu_co8435441.1_g000001 Rmu_sc0001155.1_g000002 Rmu_sc0001353.1_g000025 Rmu_sc0004705.1_g000009 Rmu_sc0009346.1_g000015 Rmu_sc0011261.1_g000007
rosa_roxburghii	Rroxscaffold_2G00145640 Rroxscaffold_2G00147240 Rroxscaffold_3G00242790 Rroxscaffold_4G00299880 Rroxscaffold_4G00311280 Rroxscaffold_4G00332500 Rroxscaffold_5G00337690 Rroxscaffold_7G00186730
rosa_rugosa	Rorug01G0451200 Rorug02G0257400 Rorug02G0421400 Rorug03G0174700 Rorug04G0086300 Rorug04G0136900 Rorug05G0023500.1 Rorug07G0311000
rosa_samantha	Rh1AG018200 Rh1AG067800 Rh1AG067900 Rh1AG068100 Rh1AG261900 Rh1AG262100 Rh1AG262200 Rh1CG245000 Rh1DG111500 Rh2CG341900 Rh2DG115800 Rh2DG326300 Rh3AG192100 Rh3BG221800 Rh3CG216500 Rh4AG214300 Rh4AG281900 Rh4BG253100 Rh4CG085200 Rh4CG296700 Rh4DG023600 Rh4DG278700 Rh5AG168900 Rh5AG516600 Rh5BG047000 Rh6AG088200 Rh6BG037000 Rh6BG052300 Rh6BG226400 Rh7AG172300 Rh7AG372800 Rh7AG482700 Rh7BG144100 Rh7CG391000 Rh7DG407300
rosa_wichuraiana	Rw1G023140 Rw2G018220 Rw6G041760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	226
AccBSI	CCGCTC	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	218
AciI	CCGC	5 cut(s)	120, 130, 136, 175, 183
AclWI	GGATC	1 cut(s)	103
AfiI	CCNNNNNNNGG	3 cut(s)	112, 189, 256
AgsI	TTSAA	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	111
AloI	GAACNNNNNNTCC	2 cut(s)	108, 140
Alw21I	GWGCWC	1 cut(s)	197
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	103
Ama87I	CYCGRG	1 cut(s)	222
AoxI	GGCC	1 cut(s)	240
ApeKI	GCWGC	3 cut(s)	132, 177, 260
AvaI	CYCGRG	1 cut(s)	222
BanI	GGYRCC	1 cut(s)	226
BbsI	GAAGAC	2 cut(s)	54, 108
Bbv12I	GWGCWC	1 cut(s)	197
BbvI	GCAGC	3 cut(s)	119, 189, 247
BccI	CCATC	2 cut(s)	71, 168
BceAI	ACGGC	1 cut(s)	161
BcgI	CGANNNNNNTGC	2 cut(s)	208, 242
BciT130I	CCWGG	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	211
BisI	GCNGC	5 cut(s)	133, 136, 175, 178, 261
BlsI	GCNGC	5 cut(s)	134, 137, 176, 179, 262
Bme1390I	CCNGG	1 cut(s)	113
BmeT110I	CYCGRG	1 cut(s)	222
BmiI	GGNNCC	2 cut(s)	117, 228
BmrFI	CCNGG	1 cut(s)	113
BpiI	GAAGAC	2 cut(s)	54, 108
BsaJI	CCNNGG	1 cut(s)	198
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 189, 256
BseBI	CCWGG	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	198
BseLI	CCNNNNNNNGG	3 cut(s)	112, 189, 256
BseRI	GAGGAG	2 cut(s)	116, 146
BseXI	GCAGC	3 cut(s)	119, 189, 247
BshFI	GGCC	1 cut(s)	242
BshNI	GGYRCC	1 cut(s)	226
BsiHKAI	GWGCWC	1 cut(s)	197
BsiHKCI	CYCGRG	1 cut(s)	222
BslI	CCNNNNNNNGG	3 cut(s)	112, 189, 256
BsmAI	GTCTC	1 cut(s)	211
BsmBI	CGTCTC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	242
BsoBI	CYCGRG	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	2 cut(s)	54, 108
Bsp19I	CCATGG	1 cut(s)	198
BspACI	CCGC	5 cut(s)	120, 130, 136, 175, 183
BspANI	GGCC	1 cut(s)	242
BspLI	GGNNCC	2 cut(s)	117, 228
BspPI	GGATC	1 cut(s)	103
BspT107I	GGYRCC	1 cut(s)	226
BsrBI	CCGCTC	1 cut(s)	122
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	2 cut(s)	54, 108
BssT1I	CCWWGG	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	113
Bst4CI	ACNGT	2 cut(s)	20, 26
BstDSI	CCRYGG	1 cut(s)	198
BstENI	CCTNNNNNAGG	1 cut(s)	254
BstKTI	GATC	2 cut(s)	57, 111
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	2 cut(s)	54, 108
BstNI	CCWGG	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	111
BstV1I	GCAGC	3 cut(s)	119, 189, 247
BstV2I	GAAGAC	2 cut(s)	54, 108
BsuRI	GGCC	1 cut(s)	242
BtgI	CCRYGG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	25
CspCI	CAANNNNNGTGG	2 cut(s)	219, 254
CviAII	CATG	1 cut(s)	199
CviJI	RGCY	4 cut(s)	148, 180, 242, 260
CviKI_1	RGCY	4 cut(s)	148, 180, 242, 260
DpnI	GATC	2 cut(s)	56, 110
DpnII	GATC	2 cut(s)	54, 108
Eco130I	CCWWGG	1 cut(s)	198
Eco88I	CYCGRG	1 cut(s)	222
EcoNI	CCTNNNNNAGG	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	111
EcoT14I	CCWWGG	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	198
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	1 cut(s)	202
FaiI	YATR	2 cut(s)	172, 200
FatI	CATG	1 cut(s)	198
FauI	CCCGC	2 cut(s)	127, 190
FblI	GTMKAC	1 cut(s)	218
Fnu4HI	GCNGC	5 cut(s)	133, 136, 175, 178, 261
Fsp4HI	GCNGC	5 cut(s)	133, 136, 175, 178, 261
GluI	GCNGC	5 cut(s)	133, 136, 175, 178, 261
HaeIII	GGCC	1 cut(s)	242
Hin1II	CATG	1 cut(s)	202
HincII	GTYRAC	1 cut(s)	219
HindII	GTYRAC	1 cut(s)	219
HinfI	GANTC	1 cut(s)	220
Hpy166II	GTNNAC	2 cut(s)	34, 219
Hpy188I	TCNGA	2 cut(s)	13, 165
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	2 cut(s)	34, 219
Hpy99I	CGWCG	2 cut(s)	77, 220
HpyAV	CCTTC	2 cut(s)	73, 253
HpyCH4III	ACNGT	2 cut(s)	20, 26
Hsp92II	CATG	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	54, 108
LmnI	GCTCC	1 cut(s)	200
LpnPI	CCDG	3 cut(s)	98, 125, 200
Lsp1109I	GCAGC	3 cut(s)	119, 189, 247
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	2 cut(s)	56, 110
MbiI	CCGCTC	1 cut(s)	122
MboI	GATC	2 cut(s)	54, 108
MboII	GAAGA	6 cut(s)	49, 56, 59, 110, 113, 238
MhlI	GDGCHC	1 cut(s)	197
MlyI	GAGTC	1 cut(s)	214
MnlI	CCTC	5 cut(s)	137, 167, 223, 244, 250
MspA1I	CMGCKG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	113
MvaI	CCWGG	1 cut(s)	113
NcoI	CCATGG	1 cut(s)	198
NdeII	GATC	2 cut(s)	54, 108
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	2 cut(s)	117, 228
NmuCI	GTSAC	1 cut(s)	20
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 215
PflFI	GACNNNGTC	1 cut(s)	214
PfoI	TCCNGGA	1 cut(s)	111
PkrI	GCNGC	5 cut(s)	134, 137, 176, 179, 262
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
Psp6I	CCWGG	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	111
PspN4I	GGNNCC	2 cut(s)	117, 228
PsyI	GACNNNGTC	1 cut(s)	214
SalI	GTCGAC	1 cut(s)	217
SatI	GCNGC	5 cut(s)	133, 136, 175, 178, 261
Sau3AI	GATC	2 cut(s)	54, 108
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	2 cut(s)	215, 236
SsiI	CCGC	5 cut(s)	120, 130, 136, 175, 183
StyD4I	CCNGG	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	2 cut(s)	20, 26
TaqI	TCGA	3 cut(s)	209, 218, 255
TauI	GCSGC	2 cut(s)	138, 177
TscAI	CASTG	1 cut(s)	25
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	3 cut(s)	132, 177, 260
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	1 cut(s)	140
TspRI	CASTG	1 cut(s)	25
Tth111I	GACNNNGTC	1 cut(s)	214
XagI	CCTNNNNNAGG	1 cut(s)	254
XmiI	GTMKAC	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.