Rmu_co8435441.1_g000001
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8435441.1
Physical Location & Seq
Reverse (-)
952 .. 1283
332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8435441.1_g000001.1.cds

Sequence Viewer

Length: 243 bp
atggtgtgctcaagtttaaggattgctattccaaagtctattgtctactgtcaagtacgagaagccaaacgcagcttactcgatcatttttttgctgagctgggttcaaaagagacaagacagttatctaagatgttggatgaggatccagcagtcatgcagcgtcgtaccagccttgcaaagaggctagagctgtacagaagtgctcaggcagagattgatgcagttgcttggtccaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

80

Amino Acids

9.17

Weight (kDa)

9.39

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 45
AclWI GGATC 2 cut(s) 140, 153
AfaI GTAC 3 cut(s) 57, 169, 197
AgsI TTSAA 1 cut(s) 108
AluBI AGCT 3 cut(s) 75, 100, 193
AluI AGCT 3 cut(s) 75, 100, 193
Alw21I GWGCWC 2 cut(s) 11, 208
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 2 cut(s) 140, 153
ApeKI GCWGC 2 cut(s) 72, 160
AspS9I GGNCC 1 cut(s) 234
AvaII GGWCC 1 cut(s) 234
BamHI GGATCC 1 cut(s) 145
Bbv12I GWGCWC 2 cut(s) 11, 208
BbvI GCAGC 2 cut(s) 84, 172
BcgI CGANNNNNNTGC 2 cut(s) 61, 95
BcoDI GTCTC 1 cut(s) 107
BfaI CTAG 1 cut(s) 188
BisI GCNGC 2 cut(s) 73, 161
BlpI GCTNAGC 1 cut(s) 96
BlsI GCNGC 2 cut(s) 74, 162
Bme18I GGWCC 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 147
BmsI GCATC 1 cut(s) 211
Bpu10I CCTNAGC 1 cut(s) 207
Bpu1102I GCTNAGC 1 cut(s) 96
BsaBI GATNNNNATC 1 cut(s) 144
Bse8I GATNNNNATC 1 cut(s) 144
BseGI GGATG 1 cut(s) 145
BseJI GATNNNNATC 1 cut(s) 144
BseMII CTCAG 2 cut(s) 87, 221
BseXI GCAGC 2 cut(s) 84, 172
BseYI CCCAGC 1 cut(s) 100
BsiHKAI GWGCWC 2 cut(s) 11, 208
BsmAI GTCTC 1 cut(s) 107
Bsp1286I GDGCHC 2 cut(s) 11, 208
Bsp1407I TGTACA 1 cut(s) 195
Bsp143I GATC 2 cut(s) 82, 145
Bsp1720I GCTNAGC 1 cut(s) 96
BspCNI CTCAG 2 cut(s) 88, 220
BspLI GGNNCC 1 cut(s) 147
BspPI GGATC 2 cut(s) 140, 153
BsrGI TGTACA 1 cut(s) 195
BssMI GATC 2 cut(s) 82, 145
Bst4CI ACNGT 2 cut(s) 50, 123
BstAUI TGTACA 1 cut(s) 195
BstDEI CTNAG 3 cut(s) 96, 129, 207
BstF5I GGATG 1 cut(s) 145
BstKTI GATC 2 cut(s) 85, 148
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 2 cut(s) 82, 145
BstV1I GCAGC 2 cut(s) 84, 172
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BtsCI GGATG 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 234
CseI GACGC 1 cut(s) 152
Csp6I GTAC 3 cut(s) 56, 168, 196
CviAII CATG 1 cut(s) 157
CviJI RGCY 6 cut(s) 65, 75, 100, 174, 187, 193
CviKI_1 RGCY 6 cut(s) 65, 75, 100, 174, 187, 193
CviQI GTAC 3 cut(s) 56, 168, 196
DdeI CTNAG 3 cut(s) 96, 129, 207
DpnI GATC 2 cut(s) 84, 147
DpnII GATC 2 cut(s) 82, 145
Eco47I GGWCC 1 cut(s) 234
FaeI CATG 1 cut(s) 160
FaiI YATR 1 cut(s) 158
FatI CATG 1 cut(s) 156
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 2 cut(s) 73, 161
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 2 cut(s) 73, 161
FspBI CTAG 1 cut(s) 188
GluI GCNGC 2 cut(s) 73, 161
GsaI CCCAGC 1 cut(s) 104
HgaI GACGC 1 cut(s) 152
Hin1II CATG 1 cut(s) 160
Hpy166II GTNNAC 1 cut(s) 46
Hpy8I GTNNAC 1 cut(s) 46
Hpy99I CGWCG 1 cut(s) 168
HpyCH4III ACNGT 2 cut(s) 50, 123
HpyCH4V TGCA 3 cut(s) 160, 179, 224
HpyF3I CTNAG 3 cut(s) 96, 129, 207
Hsp92II CATG 1 cut(s) 160
Kzo9I GATC 2 cut(s) 82, 145
LpnPI CCDG 4 cut(s) 86, 162, 184, 194
Lsp1109I GCAGC 2 cut(s) 84, 172
LweI GCATC 1 cut(s) 211
MaeI CTAG 1 cut(s) 188
MalI GATC 2 cut(s) 84, 147
MboI GATC 2 cut(s) 82, 145
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 2 cut(s) 11, 208
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 2 cut(s) 136, 177
MseI TTAA 1 cut(s) 17
NdeII GATC 2 cut(s) 82, 145
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 1 cut(s) 147
PkrI GCNGC 2 cut(s) 74, 162
PspFI CCCAGC 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 234
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 3 cut(s) 57, 169, 197
RsaNI GTAC 3 cut(s) 56, 168, 196
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 2 cut(s) 73, 161
Sau3AI GATC 2 cut(s) 82, 145
Sau96I GGNCC 1 cut(s) 234
SduI GDGCHC 2 cut(s) 11, 208
SetI ASST 3 cut(s) 77, 102, 195
SfaNI GCATC 1 cut(s) 211
SinI GGWCC 1 cut(s) 234
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
SspMI CTAG 1 cut(s) 188
TaaI ACNGT 2 cut(s) 50, 123
TaqI TCGA 1 cut(s) 81
TatI WGTACW 1 cut(s) 195
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TseI GCWGC 2 cut(s) 72, 160
VpaK11BI GGWCC 1 cut(s) 234
XmiI GTMKAC 1 cut(s) 45
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.