Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000693

Physical Location & Seq

Genomic Coordinates Forward (+)

35269501 .. 35273017

Gene Structure 3517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00242790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGCGAGCTTTTGCACCAGCCTGTCCTGGGTTTCGTAAGTGTTTACCCGAGAAAATGTTGAAGGATCTGATGAGAATGGTAGTCAAGGAATTAAAGCAGTATCCCACTTTGGAAGTTGGGAATGCAAGATTTGAATCGCTGGATAGGATGAAAGAAGAGAGCAAGGAAGCAACTATGCAGCTAGTTGATATGGAGTGTGGTTACCTCACCGTTGAATTTTTCCGCAAGCTTCCTCAGGATATTGAAAAGGGGGGACATATGTATCAGCTGCATAGTTGGTTACGTATTGAAAAGGGGGCACATATGTATCAGCTGCATTGTGTGGTTACATATGTATCAATTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

115

Amino Acids

13.55

Weight (kDa)

8.35

Isoelectric Point (pI)

46.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g37570 FvH4_6g37570 FvH4_6g37570
pyrus_communis	pycom13g05420
rosa_chinensis	RchiOBHm_Chr1g0325471 RchiOBHm_Chr1g0343781 RchiOBHm_Chr7g0185751 RchiOBHm_Chr7g0214791 RchiOBHm_Chr7g0230311
rosa_laevigata	RLG00000007418 RLG00000007555 RLG00000018106 RLG00000023913 RLG00000029245 RLG00000032850
rosa_multiflora	Rmu_co8435441.1_g000001 Rmu_sc0001155.1_g000002 Rmu_sc0001353.1_g000025 Rmu_sc0004705.1_g000009 Rmu_sc0009346.1_g000015 Rmu_sc0011261.1_g000007
rosa_roxburghii	Rroxscaffold_2G00145640 Rroxscaffold_2G00147240 Rroxscaffold_3G00242790 Rroxscaffold_4G00299880 Rroxscaffold_4G00311280 Rroxscaffold_4G00332500 Rroxscaffold_5G00337690 Rroxscaffold_7G00186730
rosa_rugosa	Rorug01G0451200 Rorug02G0257400 Rorug02G0421400 Rorug03G0174700 Rorug04G0086300 Rorug04G0136900 Rorug05G0023500.1 Rorug07G0311000
rosa_samantha	Rh1AG018200 Rh1AG067800 Rh1AG067900 Rh1AG068100 Rh1AG261900 Rh1AG262100 Rh1AG262200 Rh1CG245000 Rh1DG111500 Rh2CG341900 Rh2DG115800 Rh2DG326300 Rh3AG192100 Rh3BG221800 Rh3CG216500 Rh4AG214300 Rh4AG281900 Rh4BG253100 Rh4CG085200 Rh4CG296700 Rh4DG023600 Rh4DG278700 Rh5AG168900 Rh5AG516600 Rh5BG047000 Rh6AG088200 Rh6BG037000 Rh6BG052300 Rh6BG226400 Rh7AG172300 Rh7AG372800 Rh7AG482700 Rh7BG144100 Rh7CG391000 Rh7DG407300
rosa_wichuraiana	Rw1G023140 Rw2G018220 Rw6G041760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	223
AclWI	GGATC	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgsI	TTSAA	5 cut(s)	61, 134, 215, 245, 290
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	5 cut(s)	8, 181, 229, 268, 313
AluI	AGCT	5 cut(s)	8, 181, 229, 268, 313
AlwI	GGATC	1 cut(s)	72
Ama87I	CYCGRG	1 cut(s)	47
ApeKI	GCWGC	3 cut(s)	178, 268, 313
ApoI	RAATTY	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	199
AvaI	CYCGRG	1 cut(s)	47
AxyI	CCTNAGG	1 cut(s)	234
BaeGI	GKGCMC	1 cut(s)	301
BaeI	ACNNNNGTAYC	5 cut(s)	245, 278, 290, 318, 323
BbvI	GCAGC	3 cut(s)	190, 255, 300
BciT130I	CCWGG	1 cut(s)	27
BciVI	GTATCC	1 cut(s)	111
BfaI	CTAG	1 cut(s)	182
BfuI	GTATCC	1 cut(s)	111
BisI	GCNGC	3 cut(s)	179, 269, 314
BlsI	GCNGC	3 cut(s)	180, 270, 315
Bme1390I	CCNGG	1 cut(s)	27
BmeT110I	CYCGRG	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	27
BsaAI	YACGTR	1 cut(s)	284
BsaBI	GATNNNNATC	1 cut(s)	133
BsaJI	CCNNGG	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse21I	CCTNAGG	1 cut(s)	234
Bse8I	GATNNNNATC	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	153
BseJI	GATNNNNATC	1 cut(s)	133
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	248
BseSI	GKGCMC	1 cut(s)	301
BseXI	GCAGC	3 cut(s)	190, 255, 300
BsiHKCI	CYCGRG	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	267
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	267
BsmI	GAATGC	1 cut(s)	127
BsoBI	CYCGRG	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	1 cut(s)	223
BspCNI	CTCAG	1 cut(s)	247
BspPI	GGATC	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	1 cut(s)	64
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	211
Bst6I	CTCTTC	1 cut(s)	150
BstBAI	YACGTR	1 cut(s)	284
BstC8I	GCNNGC	2 cut(s)	6, 227
BstDEI	CTNAG	1 cut(s)	234
BstEII	GGTNACC	1 cut(s)	200
BstF5I	GGATG	1 cut(s)	153
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstNI	CCWGG	1 cut(s)	27
BstPI	GGTNACC	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	25
BstSLI	GKGCMC	1 cut(s)	301
BstSNI	TACGTA	1 cut(s)	284
BstV1I	GCAGC	3 cut(s)	190, 255, 300
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
Bsu36I	CCTNAGG	1 cut(s)	234
BsuI	GTATCC	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	153
Cac8I	GCNNGC	2 cut(s)	6, 227
CviJI	RGCY	6 cut(s)	8, 20, 181, 229, 268, 313
CviKI_1	RGCY	6 cut(s)	8, 20, 181, 229, 268, 313
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco105I	TACGTA	1 cut(s)	284
Eco81I	CCTNAGG	1 cut(s)	234
Eco88I	CYCGRG	1 cut(s)	47
Eco91I	GGTNACC	1 cut(s)	200
EcoO65I	GGTNACC	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	25
FaiI	YATR	9 cut(s)	176, 191, 258, 260, 273, 303, 305, 331, 333
FaqI	GGGAC	1 cut(s)	267
FauNDI	CATATG	3 cut(s)	258, 303, 331
Fnu4HI	GCNGC	3 cut(s)	179, 269, 314
FokI	GGATG	1 cut(s)	160
Fsp4HI	GCNGC	3 cut(s)	179, 269, 314
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	3 cut(s)	179, 269, 314
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	1 cut(s)	134
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188I	TCNGA	1 cut(s)	69
Hpy188III	TCNNGA	1 cut(s)	236
Hpy8I	GTNNAC	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4IV	ACGT	1 cut(s)	283
HpyCH4V	TGCA	5 cut(s)	14, 125, 178, 271, 316
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	1 cut(s)	283
Kzo9I	GATC	1 cut(s)	64
LpnPI	CCDG	6 cut(s)	12, 30, 34, 39, 125, 221
Lsp1109I	GCAGC	3 cut(s)	190, 255, 300
MaeI	CTAG	1 cut(s)	182
MaeII	ACGT	1 cut(s)	283
MaeIII	GTNAC	3 cut(s)	200, 279, 325
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	1 cut(s)	167
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	301
MluCI	AATT	3 cut(s)	89, 215, 339
MnlI	CCTC	2 cut(s)	215, 243
MseI	TTAA	1 cut(s)	92
MspA1I	CMGCKG	2 cut(s)	268, 313
MspR9I	CCNGG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	127
MvaI	CCWGG	1 cut(s)	27
NdeI	CATATG	3 cut(s)	258, 303, 331
NdeII	GATC	1 cut(s)	64
PctI	GAATGC	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	3 cut(s)	180, 270, 315
Ppu21I	YACGTR	1 cut(s)	284
Psp6I	CCWGG	1 cut(s)	25
PspEI	GGTNACC	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	64
PvuII	CAGCTG	2 cut(s)	268, 313
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	3 cut(s)	179, 269, 314
Sau3AI	GATC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	27
SduI	GDGCHC	1 cut(s)	301
SetI	ASST	7 cut(s)	10, 183, 207, 231, 270, 286, 315
SnaBI	TACGTA	1 cut(s)	284
Sse9I	AATT	3 cut(s)	89, 215, 339
SsiI	CCGC	1 cut(s)	223
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	1 cut(s)	25
TaaI	ACNGT	1 cut(s)	211
TaiI	ACGT	1 cut(s)	286
TasI	AATT	3 cut(s)	89, 215, 339
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TseI	GCWGC	3 cut(s)	178, 268, 313
TspDTI	ATGAA	1 cut(s)	164
XapI	RAATTY	1 cut(s)	215
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.