Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004705.1

Orthogroup ID

OG0000693

Physical Location & Seq

Genomic Coordinates Forward (+)

36292 .. 43879

Gene Structure 7588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004705.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

atggattctgagcctttcaagagagaaaagaacgtgacttttctggggataatgtaccagctcctcccacaccaatgccaaatgcaagagattaaccgcctcactctcgcctacttcgtcgtctccggccttgacctcctccatgctctccaccgcgttcatgccatattgaagcagtatcccactttaagagtggtagatgggaatgcagcctttgaatcgctggataggatgaaagaagagagcaagaaagcacaagtgagaaaagatggtgtagagggtttgaaaccaaatgcaagaggacctggtcttgtcacttttggggataaggtgaagacactgaccaaggaggaatatgtaccggttgatggaaggtcctcagctttggtggagtttctccggcaagatattgtcaatggcaatttggacagagtgaaagaatgtgtggccatagacaagaatattggcggagaagacggcagagtttcactcatcaacactattggccgggaagaaaagacacctcttttcattgctctagagtactacaagaaggccaaggaatgcttccattacttggtggataatggtgtttctatcgtaaactggagcaaagaaggtgacgagttagccatggactgtgctttgtatttcgagcgagacttgtcccaaagcctcagatctctgcctcagtgtggccccaactcgaattggtcatctacatcttcctcgtggaaagctgcaagatctagtaatggcgcctgtggcttttccaggtgggtggatagccatgggcgggatcttcctgttcaagaactgattgtcggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004662 GO:0004663 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005953 GO:0005968 GO:0006464 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0008284 GO:0008318 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018344 GO:0019222 GO:0019538 GO:0022622 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0034097 GO:0036211 GO:0042127 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045787 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051726 GO:0051769 GO:0051771 GO:0060255 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

276

Amino Acids

30.97

Weight (kDa)

6.61

Isoelectric Point (pI)

42.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g37570 FvH4_6g37570 FvH4_6g37570
pyrus_communis	pycom13g05420
rosa_chinensis	RchiOBHm_Chr1g0325471 RchiOBHm_Chr1g0343781 RchiOBHm_Chr7g0185751 RchiOBHm_Chr7g0214791 RchiOBHm_Chr7g0230311
rosa_laevigata	RLG00000007418 RLG00000007555 RLG00000018106 RLG00000023913 RLG00000029245 RLG00000032850
rosa_multiflora	Rmu_co8435441.1_g000001 Rmu_sc0001155.1_g000002 Rmu_sc0001353.1_g000025 Rmu_sc0004705.1_g000009 Rmu_sc0009346.1_g000015 Rmu_sc0011261.1_g000007
rosa_roxburghii	Rroxscaffold_2G00145640 Rroxscaffold_2G00147240 Rroxscaffold_3G00242790 Rroxscaffold_4G00299880 Rroxscaffold_4G00311280 Rroxscaffold_4G00332500 Rroxscaffold_5G00337690 Rroxscaffold_7G00186730
rosa_rugosa	Rorug01G0451200 Rorug02G0257400 Rorug02G0421400 Rorug03G0174700 Rorug04G0086300 Rorug04G0136900 Rorug05G0023500.1 Rorug07G0311000
rosa_samantha	Rh1AG018200 Rh1AG067800 Rh1AG067900 Rh1AG068100 Rh1AG261900 Rh1AG262100 Rh1AG262200 Rh1CG245000 Rh1DG111500 Rh2CG341900 Rh2DG115800 Rh2DG326300 Rh3AG192100 Rh3BG221800 Rh3CG216500 Rh4AG214300 Rh4AG281900 Rh4BG253100 Rh4CG085200 Rh4CG296700 Rh4DG023600 Rh4DG278700 Rh5AG168900 Rh5AG516600 Rh5BG047000 Rh6AG088200 Rh6BG037000 Rh6BG052300 Rh6BG226400 Rh7AG172300 Rh7AG372800 Rh7AG482700 Rh7BG144100 Rh7CG391000 Rh7DG407300
rosa_wichuraiana	Rw1G023140 Rw2G018220 Rw6G041760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	758
AccB7I	CCANNNNNTGG	1 cut(s)	577
AccII	CGCG	1 cut(s)	156
AciI	CCGC	4 cut(s)	97, 154, 468, 796
AclWI	GGATC	1 cut(s)	807
AcoI	YGGCCR	2 cut(s)	447, 505
AcyI	GRCGYC	1 cut(s)	759
AfaI	GTAC	3 cut(s)	56, 360, 545
AfiI	CCNNNNNNNGG	4 cut(s)	368, 577, 695, 796
AgeI	ACCGGT	1 cut(s)	361
AgsI	TTSAA	5 cut(s)	19, 172, 218, 286, 812
AjnI	CCWGG	2 cut(s)	304, 773
AjuI	GAANNNNNNNTTGG	2 cut(s)	551, 583
AluBI	AGCT	3 cut(s)	61, 383, 740
AluI	AGCT	3 cut(s)	61, 383, 740
Alw26I	GTCTC	2 cut(s)	127, 654
AlwI	GGATC	1 cut(s)	807
AoxI	GGCC	5 cut(s)	127, 447, 505, 555, 697
ApeKI	GCWGC	2 cut(s)	209, 740
AsiGI	ACCGGT	1 cut(s)	361
AspLEI	GCGC	1 cut(s)	761
AspS9I	GGNCC	3 cut(s)	302, 375, 698
AsuC2I	CCSGG	1 cut(s)	509
AsuHPI	GGTGA	2 cut(s)	343, 632
AvaII	GGWCC	2 cut(s)	302, 375
BalI	TGGCCA	1 cut(s)	449
BanI	GGYRCC	1 cut(s)	758
BauI	CACGAG	1 cut(s)	730
BbsI	GAAGAC	2 cut(s)	341, 480
BbvCI	CCTCAGC	1 cut(s)	379
BbvI	GCAGC	2 cut(s)	221, 727
BccI	CCATC	3 cut(s)	194, 263, 362
BceAI	ACGGC	1 cut(s)	493
BciT130I	CCWGG	2 cut(s)	306, 775
BciVI	GTATCC	1 cut(s)	189
BcnI	CCSGG	1 cut(s)	509
BcoDI	GTCTC	2 cut(s)	127, 654
BfaI	CTAG	2 cut(s)	539, 750
BfoI	RGCGCY	1 cut(s)	762
BfuI	GTATCC	1 cut(s)	189
BglII	AGATCT	2 cut(s)	680, 746
BisI	GCNGC	2 cut(s)	210, 741
BlsI	GCNGC	2 cut(s)	211, 742
BmcAI	AGTACT	1 cut(s)	545
Bme1390I	CCNGG	3 cut(s)	306, 509, 775
Bme18I	GGWCC	2 cut(s)	302, 375
BmgT120I	GGNCC	3 cut(s)	302, 375, 698
BmiI	GGNNCC	2 cut(s)	700, 760
BmrFI	CCNGG	3 cut(s)	306, 509, 775
BpiI	GAAGAC	2 cut(s)	341, 480
BplI	GAGNNNNNCTC	2 cut(s)	474, 506
BpmI	CTGGAG	1 cut(s)	628
Bpu10I	CCTNAGC	1 cut(s)	379
BpuMI	CCSGG	1 cut(s)	509
BsaHI	GRCGYC	1 cut(s)	759
BsaJI	CCNNGG	4 cut(s)	345, 558, 633, 790
BsaWI	WCCGGW	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	4 cut(s)	368, 577, 695, 796
Bse118I	RCCGGY	1 cut(s)	361
Bse1I	ACTGG	1 cut(s)	611
Bse3DI	GCAATG	1 cut(s)	531
BseBI	CCWGG	2 cut(s)	306, 775
BseDI	CCNNGG	4 cut(s)	345, 558, 633, 790
BseGI	GGATG	1 cut(s)	237
BseLI	CCNNNNNNNGG	4 cut(s)	368, 577, 695, 796
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	3 cut(s)	393, 691, 704
BseNI	ACTGG	1 cut(s)	611
BseRI	GAGGAG	2 cut(s)	53, 128
BseXI	GCAGC	2 cut(s)	221, 727
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	5 cut(s)	129, 449, 507, 557, 699
BshNI	GGYRCC	1 cut(s)	758
BshTI	ACCGGT	1 cut(s)	361
BsiSI	CCGG	4 cut(s)	126, 362, 400, 508
BslFI	GGGAC	1 cut(s)	652
BslI	CCNNNNNNNGG	4 cut(s)	368, 577, 695, 796
BsmAI	GTCTC	2 cut(s)	127, 654
BsmBI	CGTCTC	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	652
BsmI	GAATGC	2 cut(s)	211, 569
BsnI	GGCC	5 cut(s)	129, 449, 507, 557, 699
Bsp143I	GATC	3 cut(s)	680, 746, 799
Bsp19I	CCATGG	2 cut(s)	633, 790
BspACI	CCGC	4 cut(s)	97, 154, 468, 796
BspANI	GGCC	5 cut(s)	129, 449, 507, 557, 699
BspCNI	CTCAG	3 cut(s)	392, 690, 703
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	700, 760
BspPI	GGATC	1 cut(s)	807
BspT107I	GGYRCC	1 cut(s)	758
BsrDI	GCAATG	1 cut(s)	531
BsrFI	RCCGGY	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	611
BssAI	RCCGGY	1 cut(s)	361
BssECI	CCNNGG	4 cut(s)	345, 558, 633, 790
BssMI	GATC	3 cut(s)	680, 746, 799
BssNI	GRCGYC	1 cut(s)	759
BssSI	CACGAG	1 cut(s)	730
BssT1I	CCWWGG	4 cut(s)	345, 558, 633, 790
Bst2BI	CACGAG	1 cut(s)	730
Bst2UI	CCWGG	2 cut(s)	306, 775
Bst4CI	ACNGT	1 cut(s)	641
Bst6I	CTCTTC	1 cut(s)	234
BstACI	GRCGYC	1 cut(s)	759
BstDEI	CTNAG	4 cut(s)	9, 379, 677, 690
BstDSI	CCRYGG	2 cut(s)	633, 790
BstF5I	GGATG	1 cut(s)	237
BstFNI	CGCG	1 cut(s)	156
BstH2I	RGCGCY	1 cut(s)	762
BstHHI	GCGC	1 cut(s)	761
BstKTI	GATC	3 cut(s)	683, 749, 802
BstMAI	GTCTC	2 cut(s)	127, 654
BstMBI	GATC	3 cut(s)	680, 746, 799
BstMWI	GCNNNNNNNGC	1 cut(s)	765
BstNI	CCWGG	2 cut(s)	306, 775
BstSCI	CCNGG	3 cut(s)	304, 507, 773
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	221, 727
BstV2I	GAAGAC	2 cut(s)	341, 480
BstX2I	RGATCY	3 cut(s)	680, 746, 799
BstXI	CCANNNNNNTGG	1 cut(s)	781
BstYI	RGATCY	3 cut(s)	680, 746, 799
BsuI	GTATCC	1 cut(s)	189
BsuRI	GGCC	5 cut(s)	129, 449, 507, 557, 699
BtgI	CCRYGG	2 cut(s)	633, 790
BtsCI	GGATG	1 cut(s)	237
BtsIMutI	CAGTG	2 cut(s)	338, 698
CfoI	GCGC	1 cut(s)	761
Cfr10I	RCCGGY	1 cut(s)	361
Cfr13I	GGNCC	3 cut(s)	302, 375, 698
CsiI	ACCWGGT	1 cut(s)	304
Csp6I	GTAC	3 cut(s)	55, 359, 544
CspAI	ACCGGT	1 cut(s)	361
CviAII	CATG	4 cut(s)	143, 161, 634, 791
CviQI	GTAC	3 cut(s)	55, 359, 544
DdeI	CTNAG	4 cut(s)	9, 379, 677, 690
DinI	GGCGCC	1 cut(s)	760
DpnI	GATC	3 cut(s)	682, 748, 801
DpnII	GATC	3 cut(s)	680, 746, 799
EaeI	YGGCCR	2 cut(s)	447, 505
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
EciI	GGCGGA	1 cut(s)	483
Eco130I	CCWWGG	4 cut(s)	345, 558, 633, 790
Eco47I	GGWCC	2 cut(s)	302, 375
EcoO109I	RGGNCCY	2 cut(s)	302, 375
EcoRII	CCWGG	2 cut(s)	304, 773
EcoT14I	CCWWGG	4 cut(s)	345, 558, 633, 790
EgeI	GGCGCC	1 cut(s)	760
EheI	GGCGCC	1 cut(s)	760
ErhI	CCWWGG	4 cut(s)	345, 558, 633, 790
Esp3I	CGTCTC	1 cut(s)	127
FaeI	CATG	4 cut(s)	146, 164, 637, 794
FaiI	YATR	7 cut(s)	144, 162, 167, 357, 452, 635, 792
FalI	AAGNNNNNCTT	2 cut(s)	551, 583
FaqI	GGGAC	1 cut(s)	652
FatI	CATG	4 cut(s)	142, 160, 633, 790
FauI	CCCGC	1 cut(s)	789
Fnu4HI	GCNGC	2 cut(s)	210, 741
FokI	GGATG	1 cut(s)	244
Fsp4HI	GCNGC	2 cut(s)	210, 741
FspBI	CTAG	2 cut(s)	539, 750
GlaI	GCGC	1 cut(s)	760
GluI	GCNGC	2 cut(s)	210, 741
GsuI	CTGGAG	1 cut(s)	628
HaeII	RGCGCY	1 cut(s)	762
HaeIII	GGCC	5 cut(s)	129, 449, 507, 557, 699
HapII	CCGG	4 cut(s)	126, 362, 400, 508
HhaI	GCGC	1 cut(s)	761
Hin1I	GRCGYC	1 cut(s)	759
Hin1II	CATG	4 cut(s)	146, 164, 637, 794
Hin6I	GCGC	1 cut(s)	759
HinP1I	GCGC	1 cut(s)	759
HinfI	GANTC	2 cut(s)	5, 218
HpaII	CCGG	4 cut(s)	126, 362, 400, 508
HphI	GGTGA	2 cut(s)	343, 632
Hpy166II	GTNNAC	1 cut(s)	604
Hpy188I	TCNGA	2 cut(s)	10, 680
Hpy188III	TCNNGA	3 cut(s)	19, 539, 812
Hpy8I	GTNNAC	1 cut(s)	604
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	3 cut(s)	366, 547, 611
HpyCH4III	ACNGT	1 cut(s)	641
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	4 cut(s)	85, 209, 296, 743
HpyF10VI	GCNNNNNNNGC	1 cut(s)	765
HpyF3I	CTNAG	4 cut(s)	9, 379, 677, 690
HpySE526I	ACGT	1 cut(s)	33
Hsp92I	GRCGYC	1 cut(s)	759
Hsp92II	CATG	4 cut(s)	146, 164, 637, 794
HspAI	GCGC	1 cut(s)	759
KasI	GGCGCC	1 cut(s)	758
Kzo9I	GATC	3 cut(s)	680, 746, 799
LmnI	GCTCC	2 cut(s)	66, 609
Lsp1109I	GCAGC	2 cut(s)	221, 727
MabI	ACCWGGT	1 cut(s)	304
MaeI	CTAG	2 cut(s)	539, 750
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	3 cut(s)	34, 313, 620
MalI	GATC	3 cut(s)	682, 748, 801
MboI	GATC	3 cut(s)	680, 746, 799
MboII	GAAGA	6 cut(s)	251, 346, 485, 524, 717, 794
MflI	RGATCY	3 cut(s)	680, 746, 799
MlsI	TGGCCA	1 cut(s)	449
MluCI	AATT	2 cut(s)	421, 709
MluNI	TGGCCA	1 cut(s)	449
Mly113I	GGCGCC	1 cut(s)	759
Mox20I	TGGCCA	1 cut(s)	449
MscI	TGGCCA	1 cut(s)	449
MseI	TTAA	2 cut(s)	93, 188
MslI	CAYNNNNRTG	1 cut(s)	73
Msp20I	TGGCCA	1 cut(s)	449
MspI	CCGG	4 cut(s)	126, 362, 400, 508
MspR9I	CCNGG	3 cut(s)	306, 509, 775
Mva1269I	GAATGC	2 cut(s)	211, 569
MvaI	CCWGG	2 cut(s)	306, 775
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	765
NarI	GGCGCC	1 cut(s)	759
NciI	CCSGG	1 cut(s)	509
NcoI	CCATGG	2 cut(s)	633, 790
NdeII	GATC	3 cut(s)	680, 746, 799
NlaIII	CATG	4 cut(s)	146, 164, 637, 794
NlaIV	GGNNCC	2 cut(s)	700, 760
NmuCI	GTSAC	3 cut(s)	34, 313, 620
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PctI	GAATGC	2 cut(s)	211, 569
PfeI	GAWTC	2 cut(s)	5, 218
PflFI	GACNNNGTC	1 cut(s)	306
PflMI	CCANNNNNTGG	1 cut(s)	577
PinAI	ACCGGT	1 cut(s)	361
PkrI	GCNGC	2 cut(s)	211, 742
PluTI	GGCGCC	1 cut(s)	762
PpuMI	RGGWCCY	2 cut(s)	302, 375
Psp5II	RGGWCCY	2 cut(s)	302, 375
Psp6I	CCWGG	2 cut(s)	304, 773
PspGI	CCWGG	2 cut(s)	304, 773
PspN4I	GGNNCC	2 cut(s)	700, 760
PspPI	GGNCC	3 cut(s)	302, 375, 698
PspPPI	RGGWCCY	2 cut(s)	302, 375
PsuI	RGATCY	3 cut(s)	680, 746, 799
PsyI	GACNNNGTC	1 cut(s)	306
RsaI	GTAC	3 cut(s)	56, 360, 545
RsaNI	GTAC	3 cut(s)	55, 359, 544
RseI	CAYNNNNRTG	1 cut(s)	73
SaqAI	TTAA	2 cut(s)	93, 188
SatI	GCNGC	2 cut(s)	210, 741
Sau3AI	GATC	3 cut(s)	680, 746, 799
Sau96I	GGNCC	3 cut(s)	302, 375, 698
ScaI	AGTACT	1 cut(s)	545
ScrFI	CCNGG	3 cut(s)	306, 509, 775
SexAI	ACCWGGT	1 cut(s)	304
SfoI	GGCGCC	1 cut(s)	760
SinI	GGWCC	2 cut(s)	302, 375
SmiMI	CAYNNNNRTG	1 cut(s)	73
Sse9I	AATT	2 cut(s)	421, 709
SsiI	CCGC	4 cut(s)	97, 154, 468, 796
SspDI	GGCGCC	1 cut(s)	758
SspI	AATATT	1 cut(s)	463
SspMI	CTAG	2 cut(s)	539, 750
StyD4I	CCNGG	3 cut(s)	304, 507, 773
StyI	CCWWGG	4 cut(s)	345, 558, 633, 790
TaaI	ACNGT	1 cut(s)	641
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	2 cut(s)	654, 707
TasI	AATT	2 cut(s)	421, 709
TatI	WGTACW	1 cut(s)	543
TfiI	GAWTC	2 cut(s)	5, 218
Tru1I	TTAA	2 cut(s)	93, 188
Tru9I	TTAA	2 cut(s)	93, 188
TscAI	CASTG	2 cut(s)	345, 698
TseFI	GTSAC	3 cut(s)	34, 313, 620
TseI	GCWGC	2 cut(s)	209, 740
Tsp45I	GTSAC	3 cut(s)	34, 313, 620
TspDTI	ATGAA	3 cut(s)	149, 248, 520
TspRI	CASTG	2 cut(s)	345, 698
Tth111I	GACNNNGTC	1 cut(s)	306
Van91I	CCANNNNNTGG	1 cut(s)	577
VpaK11BI	GGWCC	2 cut(s)	302, 375
XbaI	TCTAGA	1 cut(s)	538
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190
XspI	CTAG	2 cut(s)	539, 750
ZrmI	AGTACT	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.