Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011261.1

Orthogroup ID

OG0000693

Physical Location & Seq

Genomic Coordinates Reverse (-)

31265 .. 31630

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011261.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

atgtatcagcatcaaacgtcaactcttagatcaatatggtttgtgagactgaggaatttgattccgaaggctgttgtccactgtcaagttcgagaggccaaaagatctctgctcaactacttttacactcaaattgggaggcaagagaaggagaggctaggtgcaatgttggatgaggatccagcactcatggaaaagagaacgcttattgctaaacggcttgaactgtacaagtcagccagagatgagattgactctgtcgcatggaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007005 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009555 GO:0009987 GO:0010152 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0030054 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048285 GO:0048856 GO:0055044 GO:0071840 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

90

Amino Acids

10.75

Weight (kDa)

9.77

Isoelectric Point (pI)

50.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g37570 FvH4_6g37570 FvH4_6g37570
pyrus_communis	pycom13g05420
rosa_chinensis	RchiOBHm_Chr1g0325471 RchiOBHm_Chr1g0343781 RchiOBHm_Chr7g0185751 RchiOBHm_Chr7g0214791 RchiOBHm_Chr7g0230311
rosa_laevigata	RLG00000007418 RLG00000007555 RLG00000018106 RLG00000023913 RLG00000029245 RLG00000032850
rosa_multiflora	Rmu_co8435441.1_g000001 Rmu_sc0001155.1_g000002 Rmu_sc0001353.1_g000025 Rmu_sc0004705.1_g000009 Rmu_sc0009346.1_g000015 Rmu_sc0011261.1_g000007
rosa_roxburghii	Rroxscaffold_2G00145640 Rroxscaffold_2G00147240 Rroxscaffold_3G00242790 Rroxscaffold_4G00299880 Rroxscaffold_4G00311280 Rroxscaffold_4G00332500 Rroxscaffold_5G00337690 Rroxscaffold_7G00186730
rosa_rugosa	Rorug01G0451200 Rorug02G0257400 Rorug02G0421400 Rorug03G0174700 Rorug04G0086300 Rorug04G0136900 Rorug05G0023500.1 Rorug07G0311000
rosa_samantha	Rh1AG018200 Rh1AG067800 Rh1AG067900 Rh1AG068100 Rh1AG261900 Rh1AG262100 Rh1AG262200 Rh1CG245000 Rh1DG111500 Rh2CG341900 Rh2DG115800 Rh2DG326300 Rh3AG192100 Rh3BG221800 Rh3CG216500 Rh4AG214300 Rh4AG281900 Rh4BG253100 Rh4CG085200 Rh4CG296700 Rh4DG023600 Rh4DG278700 Rh5AG168900 Rh5AG516600 Rh5BG047000 Rh6AG088200 Rh6BG037000 Rh6BG052300 Rh6BG226400 Rh7AG172300 Rh7AG372800 Rh7AG482700 Rh7BG144100 Rh7CG391000 Rh7DG407300
rosa_wichuraiana	Rw1G023140 Rw2G018220 Rw6G041760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	173, 186
AcsI	RAATTY	1 cut(s)	55
AfaI	GTAC	1 cut(s)	230
AgsI	TTSAA	1 cut(s)	224
Alw26I	GTCTC	1 cut(s)	40
AlwI	GGATC	2 cut(s)	173, 186
AoxI	GGCC	1 cut(s)	96
ApoI	RAATTY	1 cut(s)	55
BamHI	GGATCC	1 cut(s)	178
BceAI	ACGGC	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	40
BfaI	CTAG	1 cut(s)	158
BglII	AGATCT	1 cut(s)	104
BmiI	GGNNCC	1 cut(s)	180
BmsI	GCATC	1 cut(s)	19
BplI	GAGNNNNNCTC	2 cut(s)	239, 271
BsaBI	GATNNNNATC	1 cut(s)	177
Bse3DI	GCAATG	1 cut(s)	171
Bse8I	GATNNNNATC	1 cut(s)	177
BseGI	GGATG	1 cut(s)	178
BseJI	GATNNNNATC	1 cut(s)	177
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	98
Bsp1407I	TGTACA	1 cut(s)	228
Bsp143I	GATC	3 cut(s)	29, 104, 178
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	180
BspPI	GGATC	2 cut(s)	173, 186
BsrDI	GCAATG	1 cut(s)	171
BsrGI	TGTACA	1 cut(s)	228
BssMI	GATC	3 cut(s)	29, 104, 178
Bst4CI	ACNGT	2 cut(s)	83, 228
BstAUI	TGTACA	1 cut(s)	228
BstDEI	CTNAG	2 cut(s)	26, 50
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	3 cut(s)	32, 107, 181
BstMAI	GTCTC	1 cut(s)	40
BstMBI	GATC	3 cut(s)	29, 104, 178
BstX2I	RGATCY	2 cut(s)	104, 178
BstYI	RGATCY	2 cut(s)	104, 178
BsuRI	GGCC	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	178
BtsIMutI	CAGTG	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	2 cut(s)	190, 264
CviJI	RGCY	5 cut(s)	71, 98, 157, 220, 239
CviKI_1	RGCY	5 cut(s)	71, 98, 157, 220, 239
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	2 cut(s)	26, 50
DpnI	GATC	3 cut(s)	31, 106, 180
DpnII	GATC	3 cut(s)	29, 104, 178
FaeI	CATG	2 cut(s)	193, 267
FaiI	YATR	3 cut(s)	37, 191, 265
FatI	CATG	2 cut(s)	189, 263
FokI	GGATG	1 cut(s)	185
FspBI	CTAG	1 cut(s)	158
HaeIII	GGCC	1 cut(s)	98
Hin1II	CATG	2 cut(s)	193, 267
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HinfI	GANTC	2 cut(s)	61, 254
Hpy166II	GTNNAC	2 cut(s)	21, 79
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	1 cut(s)	92
Hpy8I	GTNNAC	2 cut(s)	21, 79
HpyAV	CCTTC	2 cut(s)	61, 142
HpyCH4III	ACNGT	2 cut(s)	83, 228
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	1 cut(s)	164
HpyF3I	CTNAG	2 cut(s)	26, 50
HpySE526I	ACGT	1 cut(s)	17
Hsp92II	CATG	2 cut(s)	193, 267
Kzo9I	GATC	3 cut(s)	29, 104, 178
LpnPI	CCDG	2 cut(s)	195, 253
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	1 cut(s)	17
MalI	GATC	3 cut(s)	31, 106, 180
MboI	GATC	3 cut(s)	29, 104, 178
MflI	RGATCY	2 cut(s)	104, 178
MluCI	AATT	2 cut(s)	55, 132
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	5 cut(s)	45, 88, 132, 147, 169
MslI	CAYNNNNRTG	1 cut(s)	268
NdeII	GATC	3 cut(s)	29, 104, 178
NlaIII	CATG	2 cut(s)	193, 267
NlaIV	GGNNCC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	61
PflFI	GACNNNGTC	1 cut(s)	257
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
PspN4I	GGNNCC	1 cut(s)	180
PsuI	RGATCY	2 cut(s)	104, 178
PsyI	GACNNNGTC	1 cut(s)	257
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
RseI	CAYNNNNRTG	1 cut(s)	268
Sau3AI	GATC	3 cut(s)	29, 104, 178
SchI	GAGTC	1 cut(s)	248
SetI	ASST	2 cut(s)	20, 163
SfaNI	GCATC	1 cut(s)	19
SgeI	CNNG	9 cut(s)	98, 104, 155, 170, 194, 202, 233, 244, 252
SmiMI	CAYNNNNRTG	1 cut(s)	268
Sse9I	AATT	2 cut(s)	55, 132
SspMI	CTAG	1 cut(s)	158
TaaI	ACNGT	2 cut(s)	83, 228
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	1 cut(s)	91
TasI	AATT	2 cut(s)	55, 132
TatI	WGTACW	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	61
TscAI	CASTG	1 cut(s)	86
TspRI	CASTG	1 cut(s)	86
Tth111I	GACNNNGTC	1 cut(s)	257
XapI	RAATTY	1 cut(s)	55
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.