Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001353.1

Orthogroup ID

OG0000693

Physical Location & Seq

Genomic Coordinates Forward (+)

74249 .. 75707

Gene Structure 1459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001353.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgcaatggctatccagccatgtggtgccgtatggcagtctcgaccgcgtcgactggggcgccgacctctgtggccttcttccttatcgaggtcgccttcttcctagcagaggcgactcagattcaaatgttaattggattaatgggccgccggagctgccatggcatagagagacagagaaactggaggaattaaagcagtatcccactttaagagtggaagttcggaatgcaagatttgaatcactggataggatgaaagaagagagcaaggaagcaactatgcagctagttgatatggagtgtggttacctcaccgttgaatttttccgcaagcctcctcaggatattgaaaaggggggaaatccgacacactcacttttcgacagatataacgattcctacctccggcgggttggtaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

141

Amino Acids

16.49

Weight (kDa)

5.66

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g37570 FvH4_6g37570 FvH4_6g37570
pyrus_communis	pycom13g05420
rosa_chinensis	RchiOBHm_Chr1g0325471 RchiOBHm_Chr1g0343781 RchiOBHm_Chr7g0185751 RchiOBHm_Chr7g0214791 RchiOBHm_Chr7g0230311
rosa_laevigata	RLG00000007418 RLG00000007555 RLG00000018106 RLG00000023913 RLG00000029245 RLG00000032850
rosa_multiflora	Rmu_co8435441.1_g000001 Rmu_sc0001155.1_g000002 Rmu_sc0001353.1_g000025 Rmu_sc0004705.1_g000009 Rmu_sc0009346.1_g000015 Rmu_sc0011261.1_g000007
rosa_roxburghii	Rroxscaffold_2G00145640 Rroxscaffold_2G00147240 Rroxscaffold_3G00242790 Rroxscaffold_4G00299880 Rroxscaffold_4G00311280 Rroxscaffold_4G00332500 Rroxscaffold_5G00337690 Rroxscaffold_7G00186730
rosa_rugosa	Rorug01G0451200 Rorug02G0257400 Rorug02G0421400 Rorug03G0174700 Rorug04G0086300 Rorug04G0136900 Rorug05G0023500.1 Rorug07G0311000
rosa_samantha	Rh1AG018200 Rh1AG067800 Rh1AG067900 Rh1AG068100 Rh1AG261900 Rh1AG262100 Rh1AG262200 Rh1CG245000 Rh1DG111500 Rh2CG341900 Rh2DG115800 Rh2DG326300 Rh3AG192100 Rh3BG221800 Rh3CG216500 Rh4AG214300 Rh4AG281900 Rh4BG253100 Rh4CG085200 Rh4CG296700 Rh4DG023600 Rh4DG278700 Rh5AG168900 Rh5AG516600 Rh5BG047000 Rh6AG088200 Rh6BG037000 Rh6BG052300 Rh6BG226400 Rh7AG172300 Rh7AG372800 Rh7AG482700 Rh7BG144100 Rh7CG391000 Rh7DG407300
rosa_wichuraiana	Rw1G023140 Rw2G018220 Rw6G041760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	25, 59
AccI	GTMKAC	1 cut(s)	51
AccII	CGCG	1 cut(s)	48
AciI	CCGC	4 cut(s)	46, 149, 331, 412
AcsI	RAATTY	1 cut(s)	323
AcyI	GRCGYC	1 cut(s)	60
AfiI	CCNNNNNNNGG	4 cut(s)	89, 110, 408, 412
AgsI	TTSAA	4 cut(s)	126, 242, 323, 353
AluBI	AGCT	2 cut(s)	157, 289
AluI	AGCT	2 cut(s)	157, 289
Alw26I	GTCTC	2 cut(s)	44, 167
AoxI	GGCC	2 cut(s)	73, 146
ApeKI	GCWGC	2 cut(s)	157, 286
ApoI	RAATTY	1 cut(s)	323
AseI	ATTAAT	1 cut(s)	141
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	307
AxyI	CCTNAGG	1 cut(s)	342
BanI	GGYRCC	2 cut(s)	25, 59
BbvI	GCAGC	2 cut(s)	144, 298
BceAI	ACGGC	1 cut(s)	13
BciVI	GTATCC	1 cut(s)	213
BcoDI	GTCTC	2 cut(s)	44, 167
BfaI	CTAG	2 cut(s)	105, 290
BfoI	RGCGCY	1 cut(s)	63
BfuI	GTATCC	1 cut(s)	213
BisI	GCNGC	3 cut(s)	149, 158, 287
BlsI	GCNGC	3 cut(s)	150, 159, 288
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	2 cut(s)	27, 61
BmrI	ACTGGG	1 cut(s)	64
BmuI	ACTGGG	1 cut(s)	64
BpmI	CTGGAG	1 cut(s)	206
BsaBI	GATNNNNATC	1 cut(s)	241
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	4 cut(s)	89, 110, 408, 412
Bse1I	ACTGG	3 cut(s)	59, 189, 252
Bse21I	CCTNAGG	1 cut(s)	342
Bse3DI	GCAATG	1 cut(s)	11
Bse8I	GATNNNNATC	1 cut(s)	241
BseDI	CCNNGG	1 cut(s)	161
BseGI	GGATG	1 cut(s)	261
BseJI	GATNNNNATC	1 cut(s)	241
BseLI	CCNNNNNNNGG	4 cut(s)	89, 110, 408, 412
BseMI	GCAATG	1 cut(s)	11
BseMII	CTCAG	2 cut(s)	132, 356
BseNI	ACTGG	3 cut(s)	59, 189, 252
BseRI	GAGGAG	1 cut(s)	330
BseXI	GCAGC	2 cut(s)	144, 298
Bsh1236I	CGCG	1 cut(s)	48
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	2 cut(s)	75, 148
BshNI	GGYRCC	2 cut(s)	25, 59
BsiEI	CGRYCG	1 cut(s)	46
BsiSI	CCGG	2 cut(s)	152, 409
BslI	CCNNNNNNNGG	4 cut(s)	89, 110, 408, 412
BsmAI	GTCTC	2 cut(s)	44, 167
BsmI	GAATGC	1 cut(s)	235
BsnI	GGCC	2 cut(s)	75, 148
Bsp19I	CCATGG	1 cut(s)	161
BspACI	CCGC	4 cut(s)	46, 149, 331, 412
BspANI	GGCC	2 cut(s)	75, 148
BspCNI	CTCAG	2 cut(s)	131, 355
BspFNI	CGCG	1 cut(s)	48
BspLI	GGNNCC	2 cut(s)	27, 61
BspT107I	GGYRCC	2 cut(s)	25, 59
BsrDI	GCAATG	1 cut(s)	11
BsrI	ACTGG	3 cut(s)	59, 189, 252
BssECI	CCNNGG	1 cut(s)	161
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	161
Bst4CI	ACNGT	1 cut(s)	319
Bst6I	CTCTTC	1 cut(s)	258
BstACI	GRCGYC	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	335
BstDEI	CTNAG	2 cut(s)	118, 342
BstDSI	CCRYGG	1 cut(s)	161
BstEII	GGTNACC	1 cut(s)	308
BstENI	CCTNNNNNAGG	2 cut(s)	87, 108
BstF5I	GGATG	1 cut(s)	261
BstFNI	CGCG	1 cut(s)	48
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	62
BstMAI	GTCTC	2 cut(s)	44, 167
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	3 cut(s)	154, 157, 163
BstPI	GGTNACC	1 cut(s)	308
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	144, 298
BstXI	CCANNNNNNTGG	1 cut(s)	22
Bsu36I	CCTNAGG	1 cut(s)	342
BsuI	GTATCC	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	75, 148
BtgI	CCRYGG	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	245
Cac8I	GCNNGC	1 cut(s)	335
CfoI	GCGC	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	146
CseI	GACGC	1 cut(s)	37
CviAII	CATG	2 cut(s)	20, 162
CviJI	RGCY	7 cut(s)	10, 18, 75, 148, 157, 289, 337
CviKI_1	RGCY	7 cut(s)	10, 18, 75, 148, 157, 289, 337
DdeI	CTNAG	2 cut(s)	118, 342
DinI	GGCGCC	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	161
Eco81I	CCTNAGG	1 cut(s)	342
Eco91I	GGTNACC	1 cut(s)	308
EcoNI	CCTNNNNNAGG	2 cut(s)	87, 108
EcoO65I	GGTNACC	1 cut(s)	308
EcoT14I	CCWWGG	1 cut(s)	161
EgeI	GGCGCC	1 cut(s)	61
EheI	GGCGCC	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	161
FaeI	CATG	2 cut(s)	23, 165
FaiI	YATR	7 cut(s)	21, 33, 163, 168, 284, 299, 393
FatI	CATG	2 cut(s)	19, 161
FauI	CCCGC	1 cut(s)	405
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	3 cut(s)	149, 158, 287
FokI	GGATG	1 cut(s)	268
Fsp4HI	GCNGC	3 cut(s)	149, 158, 287
FspBI	CTAG	2 cut(s)	105, 290
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	3 cut(s)	149, 158, 287
GsuI	CTGGAG	1 cut(s)	206
HaeII	RGCGCY	1 cut(s)	63
HaeIII	GGCC	2 cut(s)	75, 148
HapII	CCGG	2 cut(s)	152, 409
HgaI	GACGC	1 cut(s)	37
HhaI	GCGC	1 cut(s)	62
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	2 cut(s)	23, 165
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HinfI	GANTC	4 cut(s)	116, 122, 242, 398
HpaII	CCGG	2 cut(s)	152, 409
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	3 cut(s)	121, 228, 369
Hpy188III	TCNNGA	2 cut(s)	41, 344
Hpy8I	GTNNAC	1 cut(s)	52
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	2 cut(s)	86, 107
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4V	TGCA	3 cut(s)	4, 233, 286
HpyF10VI	GCNNNNNNNGC	3 cut(s)	154, 157, 163
HpyF3I	CTNAG	2 cut(s)	118, 342
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	23, 165
HspAI	GCGC	1 cut(s)	60
KasI	GGCGCC	1 cut(s)	59
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	7 cut(s)	28, 40, 165, 170, 233, 329, 422
Lsp1109I	GCAGC	2 cut(s)	144, 298
MaeI	CTAG	2 cut(s)	105, 290
MaeIII	GTNAC	1 cut(s)	308
MboII	GAAGA	3 cut(s)	71, 92, 275
MluCI	AATT	3 cut(s)	133, 191, 323
Mly113I	GGCGCC	1 cut(s)	60
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	392
MnlI	CCTC	8 cut(s)	77, 83, 104, 181, 323, 348, 351, 416
MseI	TTAA	4 cut(s)	132, 141, 194, 212
MspI	CCGG	2 cut(s)	152, 409
Mva1269I	GAATGC	1 cut(s)	235
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	3 cut(s)	154, 157, 163
NarI	GGCGCC	1 cut(s)	60
NcoI	CCATGG	1 cut(s)	161
NlaIII	CATG	2 cut(s)	23, 165
NlaIV	GGNNCC	2 cut(s)	27, 61
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PctI	GAATGC	1 cut(s)	235
PfeI	GAWTC	3 cut(s)	122, 242, 398
PflFI	GACNNNGTC	1 cut(s)	47
PkrI	GCNGC	3 cut(s)	150, 159, 288
PleI	GAGTC	1 cut(s)	110
PluTI	GGCGCC	1 cut(s)	63
PpsI	GAGTC	1 cut(s)	110
PshBI	ATTAAT	1 cut(s)	141
PspEI	GGTNACC	1 cut(s)	308
PspN4I	GGNNCC	2 cut(s)	27, 61
PspPI	GGNCC	1 cut(s)	146
PsyI	GACNNNGTC	1 cut(s)	47
SalI	GTCGAC	1 cut(s)	50
SaqAI	TTAA	4 cut(s)	132, 141, 194, 212
SatI	GCNGC	3 cut(s)	149, 158, 287
Sau96I	GGNCC	1 cut(s)	146
SchI	GAGTC	1 cut(s)	110
SetI	ASST	6 cut(s)	69, 94, 159, 291, 315, 408
SfoI	GGCGCC	1 cut(s)	61
Sse9I	AATT	3 cut(s)	133, 191, 323
SsiI	CCGC	4 cut(s)	46, 149, 331, 412
SspDI	GGCGCC	1 cut(s)	59
SspMI	CTAG	2 cut(s)	105, 290
StyI	CCWWGG	1 cut(s)	161
TaaI	ACNGT	1 cut(s)	319
TaqI	TCGA	4 cut(s)	42, 51, 88, 384
TasI	AATT	3 cut(s)	133, 191, 323
TauI	GCSGC	1 cut(s)	151
TfiI	GAWTC	3 cut(s)	122, 242, 398
Tru1I	TTAA	4 cut(s)	132, 141, 194, 212
Tru9I	TTAA	4 cut(s)	132, 141, 194, 212
TscAI	CASTG	1 cut(s)	252
TseI	GCWGC	2 cut(s)	157, 286
TspDTI	ATGAA	1 cut(s)	272
TspRI	CASTG	1 cut(s)	252
Tth111I	GACNNNGTC	1 cut(s)	47
VspI	ATTAAT	1 cut(s)	141
XagI	CCTNNNNNAGG	2 cut(s)	87, 108
XapI	RAATTY	1 cut(s)	323
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
XmiI	GTMKAC	1 cut(s)	51
XspI	CTAG	2 cut(s)	105, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.