Rh1AG262100
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000693
Physical Location & Seq
Reverse (-)
48471853 .. 48504755
32903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG262100.1

Sequence Viewer

Length: 753 bp
ATGGAAAAAGACCAAATTCTTATAATTTCTGACAATTTCGTAGCAAACGATTCAGCAGGGAAATTGGGATCTTATTTTGACATGGATTCACATCGGAGCATCCTTAGACTTGGATTCACACCAGAGCCCTACACAATTTCGTCATCTCGAACTTCGATTCACGCCTTTGATTCGATTTGTCTCGAACTTGGACTGAAGAAGAAAGAACAGTTTGAGTTGGAGCTAGAAGAGCTTTGGTCAATTAAAGAGATGCAGCTAAAAGAGTCTGAAACAGCTGGCAGATTTAATGGAGAGCTGCATTTTTGTTTTGCTCACCAGGTTCATGCCATATTGAAGCAGTATCCCACTTTAAGAGTGGTAGTTGGGAATGTGGCCTTTGAATCGCTGGATAGGATGAAAGAAGAGAGCAAGAAAGCACAAGTGAGAAAAGATGGTGTGGAGGGTCTGAAACCAAATGCAAGAGGGCCTGGTCTTGTCACTTTTGGGGATAAGGTGAAGACACTGACGAAGGAGGAATATATACCGGTTGATGGAAGGTCCTCAGCTTTGGTGGAGTTTCTCCGGCAAGATATTGTCAATGGAAATTTGGACAGAGTGAAAGAATTTGTGGCCATAGCCGAGAATATTGGAGTAGAAGACGGCAGAGTTTCACTCATCAACGCTATTGGCCGGGAAGAAAACACACCTCTTTTCACTGCTCTAGAGTACTACATGCAAGAAGGCCAAGGAATGCTTCCATTACTTGATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

250

Amino Acids

28.09

Weight (kDa)

5.13

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 23
AclWI GGATC 1 cut(s) 76
AcoI YGGCCR 2 cut(s) 609, 667
AcsI RAATTY 3 cut(s) 15, 583, 602
AcuI CTGAAG 1 cut(s) 215
AfaI GTAC 1 cut(s) 707
AfiI CCNNNNNNNGG 1 cut(s) 530
AgeI ACCGGT 1 cut(s) 523
AgsI TTSAA 2 cut(s) 334, 380
AjnI CCWGG 2 cut(s) 315, 466
AjuI GAANNNNNNNTTGG 2 cut(s) 717, 749
AluBI AGCT 6 cut(s) 223, 232, 256, 275, 295, 545
AluI AGCT 6 cut(s) 223, 232, 256, 275, 295, 545
Alw26I GTCTC 1 cut(s) 185
AlwI GGATC 1 cut(s) 76
AoxI GGCC 5 cut(s) 372, 464, 609, 667, 721
ApeKI GCWGC 2 cut(s) 253, 295
ApoI RAATTY 3 cut(s) 15, 583, 602
AsiGI ACCGGT 1 cut(s) 523
AspS9I GGNCC 2 cut(s) 464, 537
AsuC2I CCSGG 1 cut(s) 671
AsuHPI GGTGA 2 cut(s) 305, 505
AvaII GGWCC 1 cut(s) 537
BalI TGGCCA 1 cut(s) 611
BanII GRGCYC 1 cut(s) 129
BbsI GAAGAC 2 cut(s) 503, 642
BbvCI CCTCAGC 1 cut(s) 541
BbvI GCAGC 2 cut(s) 265, 282
BccI CCATC 3 cut(s) 425, 524, 740
BceAI ACGGC 1 cut(s) 655
BciT130I CCWGG 2 cut(s) 317, 468
BciVI GTATCC 1 cut(s) 351
BcnI CCSGG 1 cut(s) 671
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 2 cut(s) 224, 701
BfuI GTATCC 1 cut(s) 351
BisI GCNGC 2 cut(s) 254, 296
BlsI GCNGC 2 cut(s) 255, 297
BmcAI AGTACT 1 cut(s) 707
Bme1390I CCNGG 3 cut(s) 317, 468, 671
Bme18I GGWCC 1 cut(s) 537
BmgT120I GGNCC 2 cut(s) 464, 537
BmrFI CCNGG 3 cut(s) 317, 468, 671
BmsI GCATC 2 cut(s) 108, 240
BpiI GAAGAC 2 cut(s) 503, 642
BplI GAGNNNNNCTC 2 cut(s) 636, 668
Bpu10I CCTNAGC 1 cut(s) 541
BpuMI CCSGG 1 cut(s) 671
BsaBI GATNNNNATC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 724
BsaWI WCCGGW 1 cut(s) 523
Bsc4I CCNNNNNNNGG 1 cut(s) 530
Bse118I RCCGGY 1 cut(s) 523
Bse8I GATNNNNATC 1 cut(s) 90
BseBI CCWGG 2 cut(s) 317, 468
BseDI CCNNGG 1 cut(s) 724
BseGI GGATG 2 cut(s) 99, 399
BseJI GATNNNNATC 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 530
BseMII CTCAG 1 cut(s) 555
BseXI GCAGC 2 cut(s) 265, 282
BshFI GGCC 5 cut(s) 374, 466, 611, 669, 723
BshTI ACCGGT 1 cut(s) 523
BsiSI CCGG 3 cut(s) 524, 562, 670
BslI CCNNNNNNNGG 1 cut(s) 530
BsmAI GTCTC 1 cut(s) 185
BsmI GAATGC 1 cut(s) 735
BsnI GGCC 5 cut(s) 374, 466, 611, 669, 723
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 1 cut(s) 68
BspANI GGCC 5 cut(s) 374, 466, 611, 669, 723
BspCNI CTCAG 1 cut(s) 554
BspPI GGATC 1 cut(s) 76
BspQI GCTCTTC 1 cut(s) 222
BsrFI RCCGGY 1 cut(s) 523
BssAI RCCGGY 1 cut(s) 523
BssECI CCNNGG 1 cut(s) 724
BssMI GATC 1 cut(s) 68
BssT1I CCWWGG 1 cut(s) 724
Bst2UI CCWGG 2 cut(s) 317, 468
Bst4CI ACNGT 1 cut(s) 210
Bst6I CTCTTC 2 cut(s) 222, 396
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 2 cut(s) 104, 541
BstF5I GGATG 2 cut(s) 99, 399
BstKTI GATC 1 cut(s) 71
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 1 cut(s) 68
BstMWI GCNNNNNNNGC 1 cut(s) 229
BstNI CCWGG 2 cut(s) 317, 468
BstNSI RCATGY 1 cut(s) 715
BstSCI CCNGG 3 cut(s) 315, 466, 669
BstV1I GCAGC 2 cut(s) 265, 282
BstV2I GAAGAC 2 cut(s) 503, 642
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BsuI GTATCC 1 cut(s) 351
BsuRI GGCC 5 cut(s) 374, 466, 611, 669, 723
BtsCI GGATG 2 cut(s) 99, 399
BtsI GCAGTG 1 cut(s) 693
BtsIMutI CAGTG 2 cut(s) 500, 693
Cac8I GCNNGC 1 cut(s) 277
Cfr10I RCCGGY 1 cut(s) 523
Cfr13I GGNCC 2 cut(s) 464, 537
CsiI ACCWGGT 1 cut(s) 315
Csp6I GTAC 1 cut(s) 706
CspAI ACCGGT 1 cut(s) 523
CviAII CATG 3 cut(s) 82, 323, 712
CviQI GTAC 1 cut(s) 706
DdeI CTNAG 2 cut(s) 104, 541
DpnI GATC 1 cut(s) 70
DpnII GATC 1 cut(s) 68
EaeI YGGCCR 2 cut(s) 609, 667
Eam1104I CTCTTC 2 cut(s) 222, 396
EarI CTCTTC 2 cut(s) 222, 396
Eco130I CCWWGG 1 cut(s) 724
Eco24I GRGCYC 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 537
Eco57I CTGAAG 1 cut(s) 215
EcoO109I RGGNCCY 2 cut(s) 464, 537
EcoRII CCWGG 2 cut(s) 315, 466
EcoT14I CCWWGG 1 cut(s) 724
EcoT38I GRGCYC 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 724
FaeI CATG 3 cut(s) 85, 326, 715
FaiI YATR 8 cut(s) 23, 83, 324, 329, 519, 521, 614, 713
FalI AAGNNNNNCTT 2 cut(s) 717, 749
FatI CATG 3 cut(s) 81, 322, 711
Fnu4HI GCNGC 2 cut(s) 254, 296
FokI GGATG 2 cut(s) 86, 406
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 2 cut(s) 254, 296
FspBI CTAG 2 cut(s) 224, 701
GluI GCNGC 2 cut(s) 254, 296
HaeIII GGCC 5 cut(s) 374, 466, 611, 669, 723
HapII CCGG 3 cut(s) 524, 562, 670
Hin1II CATG 3 cut(s) 85, 326, 715
HinfI GANTC 7 cut(s) 50, 86, 114, 157, 170, 263, 380
HpaII CCGG 3 cut(s) 524, 562, 670
HphI GGTGA 2 cut(s) 305, 505
Hpy188I TCNGA 4 cut(s) 31, 96, 268, 447
Hpy188III TCNNGA 3 cut(s) 147, 182, 701
HpyAV CCTTC 3 cut(s) 502, 528, 713
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4V TGCA 4 cut(s) 253, 298, 458, 715
HpyF10VI GCNNNNNNNGC 1 cut(s) 229
HpyF3I CTNAG 2 cut(s) 104, 541
Hsp92II CATG 3 cut(s) 85, 326, 715
Kzo9I GATC 1 cut(s) 68
LguI GCTCTTC 1 cut(s) 222
LmnI GCTCC 2 cut(s) 96, 220
Lsp1109I GCAGC 2 cut(s) 265, 282
LweI GCATC 2 cut(s) 108, 240
MabI ACCWGGT 1 cut(s) 315
MaeI CTAG 2 cut(s) 224, 701
MaeIII GTNAC 1 cut(s) 475
MalI GATC 1 cut(s) 70
MboI GATC 1 cut(s) 68
MboII GAAGA 7 cut(s) 208, 211, 239, 413, 508, 647, 686
MflI RGATCY 1 cut(s) 68
MhlI GDGCHC 1 cut(s) 129
MlsI TGGCCA 1 cut(s) 611
MluCI AATT 8 cut(s) 15, 24, 34, 62, 135, 240, 583, 602
MluNI TGGCCA 1 cut(s) 611
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 5 cut(s) 433, 455, 505, 550, 696
Mox20I TGGCCA 1 cut(s) 611
MscI TGGCCA 1 cut(s) 611
MseI TTAA 3 cut(s) 243, 285, 350
Msp20I TGGCCA 1 cut(s) 611
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 3 cut(s) 524, 562, 670
MspR9I CCNGG 3 cut(s) 317, 468, 671
Mva1269I GAATGC 1 cut(s) 735
MvaI CCWGG 2 cut(s) 317, 468
MwoI GCNNNNNNNGC 1 cut(s) 229
NciI CCSGG 1 cut(s) 671
NdeII GATC 1 cut(s) 68
NlaIII CATG 3 cut(s) 85, 326, 715
NmeAIII GCCGAG 1 cut(s) 643
NmuCI GTSAC 1 cut(s) 475
NspI RCATGY 1 cut(s) 715
PciSI GCTCTTC 1 cut(s) 222
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PctI GAATGC 1 cut(s) 735
PfeI GAWTC 6 cut(s) 50, 86, 114, 157, 170, 380
PinAI ACCGGT 1 cut(s) 523
PkrI GCNGC 2 cut(s) 255, 297
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PpuMI RGGWCCY 1 cut(s) 537
PsiI TTATAA 1 cut(s) 23
Psp5II RGGWCCY 1 cut(s) 537
Psp6I CCWGG 2 cut(s) 315, 466
PspGI CCWGG 2 cut(s) 315, 466
PspPI GGNCC 2 cut(s) 464, 537
PspPPI RGGWCCY 1 cut(s) 537
PsuI RGATCY 1 cut(s) 68
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 1 cut(s) 707
RsaNI GTAC 1 cut(s) 706
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 3 cut(s) 243, 285, 350
SatI GCNGC 2 cut(s) 254, 296
Sau3AI GATC 1 cut(s) 68
Sau96I GGNCC 2 cut(s) 464, 537
ScaI AGTACT 1 cut(s) 707
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 3 cut(s) 317, 468, 671
SduI GDGCHC 1 cut(s) 129
SexAI ACCWGGT 1 cut(s) 315
SfaNI GCATC 2 cut(s) 108, 240
SinI GGWCC 1 cut(s) 537
Sse9I AATT 8 cut(s) 15, 24, 34, 62, 135, 240, 583, 602
SspI AATATT 1 cut(s) 625
SspMI CTAG 2 cut(s) 224, 701
StyD4I CCNGG 3 cut(s) 315, 466, 669
StyI CCWWGG 1 cut(s) 724
TaaI ACNGT 1 cut(s) 210
TaqI TCGA 4 cut(s) 148, 155, 173, 183
TasI AATT 8 cut(s) 15, 24, 34, 62, 135, 240, 583, 602
TatI WGTACW 1 cut(s) 705
TfiI GAWTC 6 cut(s) 50, 86, 114, 157, 170, 380
Tru1I TTAA 3 cut(s) 243, 285, 350
Tru9I TTAA 3 cut(s) 243, 285, 350
TscAI CASTG 2 cut(s) 507, 700
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 2 cut(s) 253, 295
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 2 cut(s) 311, 410
TspRI CASTG 2 cut(s) 507, 700
VpaK11BI GGWCC 1 cut(s) 537
XapI RAATTY 3 cut(s) 15, 583, 602
XbaI TCTAGA 1 cut(s) 700
XceI RCATGY 1 cut(s) 715
XcmI CCANNNNNNNNNTGG 1 cut(s) 352
XspI CTAG 2 cut(s) 224, 701
ZrmI AGTACT 1 cut(s) 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.