Rorug04G0086300
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000208
Physical Location & Seq
Reverse (-)
13440874 .. 13443655
2782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0086300.1

Sequence Viewer

Length: 1272 bp
ATGTCAGTCTCATCATCAGCCACGGACATTGCCAACAACGAAGATCTTCTATCCCAAATCCTTGTTCGATTACCCCCAAAATCCCTCCTTTGCTTCAAATGTGTGTCCAAACAGTGGCTTTCTCTCATTTCCAGCCCCGAATTCATTGTCGCCCACATCCGCTGGAGAGGCATCGCTTCCCCTTCTGGCCTACTCTTAAACAATGACTACTTGCACACTCCGGAGTTCCACTATGTTCCTCTGACACACAATAATCCCTCTGAACTCACTGCCCCTCCATATCTGAGCTACCTTGGTGCCCCTCGGATCAAGATCCTACAGTCTTGTAATGGTTTGCTCTTGTGTTCTTCGGCCTACCTAAAAAATGATCCAAATTATGAACTCAAATACTCTGATGACTTCACGCAGACAGAGGATGATGTTCTCTTGCCAGATATATGGCATGTTATCCCAACAATCTCAAACTCCTGCAGTCAAACAAGAATCCATTATTCTGGTTTCAGATTCTACGTCTGCAATCCCACCACCAGGCAATTCAAGACCCTTTCTTTTCCTTTCTTTCAGTACCACATACTTGCTATAAATCTGGCTTTTGATCCTTTGCATTCACCGTACTTCAAAATAGTGTGTGTACTTCGGAAGAATCTGGATACTTATATACTTCACCTATATAATTCTGAGACCAAAACTTGGAAACCATCTTCAATATCTTTTAATGCACCCAGGACAATATACTTCCGTGAACCTGTGTTCTGCAGGCGAGCAATTCACTGGTATAGTTCCCAGCAGACTTCTCTTTACTTTGATGTGGACAAAGAGTGCTTGAATCCAATGCCTATGCCCCACTCTTCGATATATGGAACTGTCAATTATTTTGGGGAGTCTCGAGGCCATCTGCATCTGGTAATGTCAACAACCTCTATTCTAGAACTCGATGTGTTTGAGTTGGAGAAAGATTACTCTGTATGGTCAGTGAGGTACCATATCAATCTTGACACCATAAGAGCTACACTCCGTGGTATGTGTGGCTTTTCCAGCGACCCGTCCCTTGCTTCAGTACTGAGAGTTACTCATGGAGAAAAGGAAGGGGAATCAGAGGCGATGGTATTTATGTTTGGTATGGAATGTATAGTTGTATCTTGCAATTTGAGTGATGGGACGCTTAAAATACATACGGGTTTTGTTCCTTCTCAGGAAGCTGTTCACGATTTAAAGCTCCTCCATTCCTATACAGACGCCTTTCCATTCATAGAGACTCTCTCTCCCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

423

Amino Acids

48.29

Weight (kDa)

6.21

Isoelectric Point (pI)

51.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 14 - 48 9.2e-08 F-box domain
FBA_3 PF08268 162 - 324 1.7e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 978
AccB1I GGYRCC 2 cut(s) 296, 978
AccB7I CCANNNNNTGG 2 cut(s) 114, 690
AccIII TCCGGA 1 cut(s) 220
AciI CCGC 1 cut(s) 160
AclWI GGATC 4 cut(s) 307, 314, 362, 590
AcsI RAATTY 1 cut(s) 140
AcuI CTGAAG 1 cut(s) 1038
AcyI GRCGYC 1 cut(s) 1236
AdeI CACNNNGTG 1 cut(s) 1016
AfaI GTAC 5 cut(s) 566, 614, 633, 980, 1059
AfiI CCNNNNNNNGG 3 cut(s) 114, 528, 690
AgsI TTSAA 5 cut(s) 97, 538, 619, 705, 826
AjnI CCWGG 2 cut(s) 527, 722
AjuI GAANNNNNNNTTGG 2 cut(s) 48, 80
AluBI AGCT 4 cut(s) 288, 1007, 1199, 1216
AluI AGCT 4 cut(s) 288, 1007, 1199, 1216
Alw26I GTCTC 4 cut(s) 13, 674, 888, 1247
AlwI GGATC 4 cut(s) 307, 314, 362, 590
Ama87I CYCGRG 1 cut(s) 885
Aor13HI TCCGGA 1 cut(s) 220
AoxI GGCC 3 cut(s) 187, 351, 889
ApoI RAATTY 1 cut(s) 140
ArsI GACNNNNNNTTYG 2 cut(s) 132, 164
Asp700I GAANNNNTTC 2 cut(s) 45, 1200
Asp718I GGTACC 1 cut(s) 978
AsuHPI GGTGA 2 cut(s) 600, 656
AvaI CYCGRG 1 cut(s) 885
BaeGI GKGCMC 1 cut(s) 301
BanI GGYRCC 2 cut(s) 296, 978
BccI CCATC 4 cut(s) 706, 900, 1096, 1148
BciT130I CCWGG 2 cut(s) 529, 724
BciVI GTATCC 1 cut(s) 643
BcoDI GTCTC 4 cut(s) 13, 674, 888, 1247
BfaI CTAG 1 cut(s) 926
BfmI CTRYAG 3 cut(s) 317, 469, 754
BfuI GTATCC 1 cut(s) 643
BglII AGATCT 1 cut(s) 43
BmcAI AGTACT 1 cut(s) 1059
Bme1390I CCNGG 2 cut(s) 529, 724
BmeT110I CYCGRG 1 cut(s) 885
BmiI GGNNCC 2 cut(s) 298, 980
BmrFI CCNGG 2 cut(s) 529, 724
BmsI GCATC 2 cut(s) 180, 907
BplI GAGNNNNNCTC 5 cut(s) 996, 1028, 1054, 1086, 1244
BpmI CTGGAG 1 cut(s) 184
BsaBI GATNNNNATC 1 cut(s) 311
BsaHI GRCGYC 1 cut(s) 1236
BsaI GGTCTC 1 cut(s) 674
BsaJI CCNNGG 5 cut(s) 21, 292, 302, 722, 1015
BsaWI WCCGGW 1 cut(s) 220
BsaXI ACNNNNNCTCC 3 cut(s) 259, 289, 1246
Bsc4I CCNNNNNNNGG 3 cut(s) 114, 528, 690
Bse1I ACTGG 1 cut(s) 776
Bse3DI GCAATG 1 cut(s) 27
Bse8I GATNNNNATC 1 cut(s) 311
BseAI TCCGGA 1 cut(s) 220
BseBI CCWGG 2 cut(s) 529, 724
BseDI CCNNGG 5 cut(s) 21, 292, 302, 722, 1015
BseGI GGATG 2 cut(s) 156, 421
BseJI GATNNNNATC 1 cut(s) 311
BseLI CCNNNNNNNGG 3 cut(s) 114, 528, 690
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 4 cut(s) 275, 669, 1052, 1205
BseNI ACTGG 1 cut(s) 776
BseRI GAGGAG 1 cut(s) 1208
BseSI GKGCMC 1 cut(s) 301
BseYI CCCAGC 1 cut(s) 783
BshFI GGCC 3 cut(s) 189, 353, 891
BshNI GGYRCC 2 cut(s) 296, 978
BsiHKCI CYCGRG 1 cut(s) 885
BsiSI CCGG 1 cut(s) 221
BslFI GGGAC 2 cut(s) 1030, 1171
BslI CCNNNNNNNGG 3 cut(s) 114, 528, 690
BsmAI GTCTC 4 cut(s) 13, 674, 888, 1247
BsmFI GGGAC 2 cut(s) 1030, 1171
BsmI GAATGC 1 cut(s) 604
BsnI GGCC 3 cut(s) 189, 353, 891
Bso31I GGTCTC 1 cut(s) 674
BsoBI CYCGRG 1 cut(s) 885
Bsp1286I GDGCHC 1 cut(s) 301
Bsp13I TCCGGA 1 cut(s) 220
Bsp143I GATC 5 cut(s) 43, 306, 312, 367, 595
BspACI CCGC 1 cut(s) 160
BspANI GGCC 3 cut(s) 189, 353, 891
BspCNI CTCAG 4 cut(s) 276, 670, 1053, 1204
BspEI TCCGGA 1 cut(s) 220
BspLI GGNNCC 2 cut(s) 298, 980
BspMAI CTGCAG 2 cut(s) 473, 758
BspPI GGATC 4 cut(s) 307, 314, 362, 590
BspT107I GGYRCC 2 cut(s) 296, 978
BspTNI GGTCTC 1 cut(s) 674
BsrDI GCAATG 1 cut(s) 27
BsrI ACTGG 1 cut(s) 776
BssECI CCNNGG 5 cut(s) 21, 292, 302, 722, 1015
BssMI GATC 5 cut(s) 43, 306, 312, 367, 595
BssNI GRCGYC 1 cut(s) 1236
BssT1I CCWWGG 1 cut(s) 292
Bst2UI CCWGG 2 cut(s) 529, 724
Bst4CI ACNGT 4 cut(s) 114, 321, 612, 865
Bst6I CTCTTC 1 cut(s) 853
BstACI GRCGYC 1 cut(s) 1236
BstC8I GCNNGC 2 cut(s) 758, 762
BstDEI CTNAG 4 cut(s) 284, 678, 1061, 1191
BstDSI CCRYGG 2 cut(s) 21, 1015
BstF5I GGATG 2 cut(s) 156, 421
BstKTI GATC 5 cut(s) 46, 309, 315, 370, 598
BstMAI GTCTC 4 cut(s) 13, 674, 888, 1247
BstMBI GATC 5 cut(s) 43, 306, 312, 367, 595
BstMWI GCNNNNNNNGC 2 cut(s) 168, 1035
BstNI CCWGG 2 cut(s) 529, 724
BstNSI RCATGY 1 cut(s) 446
BstSCI CCNGG 2 cut(s) 527, 722
BstSFI CTRYAG 3 cut(s) 317, 469, 754
BstSLI GKGCMC 1 cut(s) 301
BstX2I RGATCY 2 cut(s) 43, 312
BstXI CCANNNNNNTGG 2 cut(s) 438, 494
BstYI RGATCY 2 cut(s) 43, 312
BsuI GTATCC 1 cut(s) 643
BsuRI GGCC 3 cut(s) 189, 353, 891
BtgI CCRYGG 2 cut(s) 21, 1015
BtgZI GCGATG 2 cut(s) 157, 1115
BtsCI GGATG 2 cut(s) 156, 421
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 4 cut(s) 119, 267, 769, 978
Cac8I GCNNGC 2 cut(s) 758, 762
CseI GACGC 2 cut(s) 1168, 1244
Csp6I GTAC 5 cut(s) 565, 613, 632, 979, 1058
CspCI CAANNNNNGTGG 2 cut(s) 10, 45
CviAII CATG 2 cut(s) 443, 1073
CviQI GTAC 5 cut(s) 565, 613, 632, 979, 1058
DdeI CTNAG 4 cut(s) 284, 678, 1061, 1191
DpnI GATC 5 cut(s) 45, 308, 314, 369, 597
DpnII GATC 5 cut(s) 43, 306, 312, 367, 595
DraI TTTAAA 1 cut(s) 1212
DraIII CACNNNGTG 1 cut(s) 1016
Eam1104I CTCTTC 1 cut(s) 853
EarI CTCTTC 1 cut(s) 853
Eco130I CCWWGG 1 cut(s) 292
Eco31I GGTCTC 1 cut(s) 674
Eco57I CTGAAG 1 cut(s) 1038
Eco88I CYCGRG 1 cut(s) 885
EcoRI GAATTC 1 cut(s) 140
EcoRII CCWGG 2 cut(s) 527, 722
EcoT14I CCWWGG 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 292
FaeI CATG 2 cut(s) 446, 1076
FaqI GGGAC 2 cut(s) 1030, 1171
FatI CATG 2 cut(s) 442, 1072
FokI GGATG 2 cut(s) 143, 428
FspBI CTAG 1 cut(s) 926
GsaI CCCAGC 1 cut(s) 787
GsuI CTGGAG 1 cut(s) 184
HaeIII GGCC 3 cut(s) 189, 353, 891
HapII CCGG 1 cut(s) 221
HgaI GACGC 2 cut(s) 1168, 1244
Hin1I GRCGYC 1 cut(s) 1236
Hin1II CATG 2 cut(s) 446, 1076
HincII GTYRAC 1 cut(s) 912
HindII GTYRAC 1 cut(s) 912
HinfI GANTC 7 cut(s) 483, 504, 643, 826, 881, 1091, 1255
HpaII CCGG 1 cut(s) 221
HphI GGTGA 2 cut(s) 600, 656
Hpy166II GTNNAC 5 cut(s) 632, 743, 811, 912, 1204
Hpy188I TCNGA 9 cut(s) 243, 262, 285, 306, 394, 503, 639, 679, 1096
Hpy188III TCNNGA 9 cut(s) 221, 310, 538, 647, 885, 926, 992, 1193, 1205
Hpy8I GTNNAC 5 cut(s) 632, 743, 811, 912, 1204
HpyAV CCTTC 3 cut(s) 192, 1079, 1197
HpyCH4III ACNGT 4 cut(s) 114, 321, 612, 865
HpyCH4IV ACGT 1 cut(s) 510
HpyCH4V TGCA 8 cut(s) 214, 471, 516, 604, 719, 756, 898, 1143
HpyF10VI GCNNNNNNNGC 2 cut(s) 168, 1035
HpyF3I CTNAG 4 cut(s) 284, 678, 1061, 1191
HpySE526I ACGT 1 cut(s) 510
Hsp92I GRCGYC 1 cut(s) 1236
Hsp92II CATG 2 cut(s) 446, 1076
Kpn2I TCCGGA 1 cut(s) 220
KpnI GGTACC 1 cut(s) 982
Kzo9I GATC 5 cut(s) 43, 306, 312, 367, 595
LmnI GCTCC 1 cut(s) 1221
LweI GCATC 2 cut(s) 180, 907
MaeI CTAG 1 cut(s) 926
MaeII ACGT 1 cut(s) 510
MaeIII GTNAC 1 cut(s) 1066
MalI GATC 5 cut(s) 45, 308, 314, 369, 597
MboI GATC 5 cut(s) 43, 306, 312, 367, 595
MboII GAAGA 6 cut(s) 38, 53, 339, 652, 693, 840
MflI RGATCY 2 cut(s) 43, 312
MhlI GDGCHC 1 cut(s) 301
MluCI AATT 7 cut(s) 140, 373, 533, 673, 765, 868, 1144
MlyI GAGTC 2 cut(s) 890, 1249
MmeI TCCRAC 1 cut(s) 927
MroI TCCGGA 1 cut(s) 220
MroXI GAANNNNTTC 2 cut(s) 45, 1200
MseI TTAA 4 cut(s) 197, 714, 1164, 1211
MspA1I CMGCKG 1 cut(s) 162
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 2 cut(s) 529, 724
Mva1269I GAATGC 1 cut(s) 604
MvaI CCWGG 2 cut(s) 529, 724
MwoI GCNNNNNNNGC 2 cut(s) 168, 1035
NdeII GATC 5 cut(s) 43, 306, 312, 367, 595
NlaIII CATG 2 cut(s) 446, 1076
NlaIV GGNNCC 2 cut(s) 298, 980
NspI RCATGY 1 cut(s) 446
PaeR7I CTCGAG 1 cut(s) 885
PctI GAATGC 1 cut(s) 604
PdmI GAANNNNTTC 2 cut(s) 45, 1200
PfeI GAWTC 5 cut(s) 483, 504, 643, 826, 1091
PflMI CCANNNNNTGG 2 cut(s) 114, 690
PleI GAGTC 2 cut(s) 889, 1249
PpsI GAGTC 2 cut(s) 889, 1249
Psp6I CCWGG 2 cut(s) 527, 722
PspFI CCCAGC 1 cut(s) 783
PspGI CCWGG 2 cut(s) 527, 722
PspN4I GGNNCC 2 cut(s) 298, 980
PstI CTGCAG 2 cut(s) 473, 758
PsuI RGATCY 2 cut(s) 43, 312
RsaI GTAC 5 cut(s) 566, 614, 633, 980, 1059
RsaNI GTAC 5 cut(s) 565, 613, 632, 979, 1058
SaqAI TTAA 4 cut(s) 197, 714, 1164, 1211
Sau3AI GATC 5 cut(s) 43, 306, 312, 367, 595
ScaI AGTACT 1 cut(s) 1059
SchI GAGTC 2 cut(s) 890, 1249
ScrFI CCNGG 2 cut(s) 529, 724
SduI GDGCHC 1 cut(s) 301
SfaNI GCATC 2 cut(s) 180, 907
SfcI CTRYAG 3 cut(s) 317, 469, 754
Sfr274I CTCGAG 1 cut(s) 885
SlaI CTCGAG 1 cut(s) 885
SmlI CTYRAG 1 cut(s) 885
SmoI CTYRAG 1 cut(s) 885
Sse9I AATT 7 cut(s) 140, 373, 533, 673, 765, 868, 1144
SsiI CCGC 1 cut(s) 160
SspMI CTAG 1 cut(s) 926
StyD4I CCNGG 2 cut(s) 527, 722
StyI CCWWGG 1 cut(s) 292
TaaI ACNGT 4 cut(s) 114, 321, 612, 865
TaiI ACGT 1 cut(s) 513
TaqI TCGA 4 cut(s) 67, 851, 886, 933
TasI AATT 7 cut(s) 140, 373, 533, 673, 765, 868, 1144
TatI WGTACW 2 cut(s) 631, 1057
TfiI GAWTC 5 cut(s) 483, 504, 643, 826, 1091
Tru1I TTAA 4 cut(s) 197, 714, 1164, 1211
Tru9I TTAA 4 cut(s) 197, 714, 1164, 1211
TscAI CASTG 4 cut(s) 119, 274, 776, 978
TspDTI ATGAA 3 cut(s) 133, 393, 1237
TspGWI ACGGA 3 cut(s) 38, 728, 1004
TspRI CASTG 4 cut(s) 119, 274, 776, 978
Van91I CCANNNNNTGG 2 cut(s) 114, 690
XapI RAATTY 1 cut(s) 140
XbaI TCTAGA 1 cut(s) 925
XceI RCATGY 1 cut(s) 446
XhoI CTCGAG 1 cut(s) 885
XmnI GAANNNNTTC 2 cut(s) 45, 1200
XspI CTAG 1 cut(s) 926
ZrmI AGTACT 1 cut(s) 1059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.