pycom11g07920

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000208
Physical Location & Seq
Reverse (-)
6067309 .. 6071097
3789 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g07920.1

Sequence Viewer

Length: 444 bp
ATGAGTACCAATCTTGAATCTGCTTACAACTTTTGCCAACTTTCACATCCTCTTCTCAAAGCTGCAGGAGCTGCTAGCATTGTTTTTTTGTCCTCTACTGCTGGTGTGGTCTCAATAGATGGTGCATCTATATATTCTGCTGCTAAAGGTGCAATGAATCAGTTAGCAAAAAACTTAGCATGTGAGTGGGCGAAGGATAACATAAGGACCAACAGTGTGGCACCTTGGCTCATAACGACTCCCCTCGTTGAACCAGTTCTCCGAAATGAAAAGATATTGGAGATGATGAACTCTAGGTGCCCTTTAGGACGTCCTGGAGAGCCAGAGGAGGTGTCTTCCTTGGTAGCATTTCTATGCCTACCTGCAGCCTCTTACATTACTGGGCAGACTATTATCATCGACGGTGGAGTGACTGTCAATGGCTTGCTCTTCCAAGGAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

148

Amino Acids

15.48

Weight (kDa)

5.29

Isoelectric Point (pI)

30.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 1 - 138 1.5e-38 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 1 - 89 5.5e-20 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 313
Acc36I ACCTGC 1 cut(s) 370
AccB1I GGYRCC 2 cut(s) 220, 297
AcyI GRCGYC 1 cut(s) 310
AfaI GTAC 1 cut(s) 7
AgsI TTSAA 2 cut(s) 17, 251
AjnI CCWGG 1 cut(s) 313
AloI GAACNNNNNNTCC 2 cut(s) 243, 275
AluBI AGCT 2 cut(s) 62, 71
AluI AGCT 2 cut(s) 62, 71
Alw26I GTCTC 1 cut(s) 115
AlwNI CAGNNNCTG 1 cut(s) 71
ApeKI GCWGC 4 cut(s) 62, 71, 140, 365
Asp700I GAANNNNTTC 1 cut(s) 255
AspS9I GGNCC 1 cut(s) 207
AsuNHI GCTAGC 1 cut(s) 74
AvaII GGWCC 1 cut(s) 207
BaeGI GKGCMC 1 cut(s) 302
BanI GGYRCC 2 cut(s) 220, 297
BbsI GAAGAC 1 cut(s) 327
BbvI GCAGC 4 cut(s) 49, 58, 127, 377
BccI CCATC 1 cut(s) 113
BciT130I CCWGG 1 cut(s) 315
BcoDI GTCTC 1 cut(s) 115
BfaI CTAG 2 cut(s) 75, 294
BfmI CTRYAG 2 cut(s) 63, 363
BfuAI ACCTGC 1 cut(s) 370
BisI GCNGC 4 cut(s) 63, 72, 141, 366
BlsI GCNGC 4 cut(s) 64, 73, 142, 367
Bme1390I CCNGG 1 cut(s) 315
Bme18I GGWCC 1 cut(s) 207
BmgT120I GGNCC 1 cut(s) 207
BmiI GGNNCC 2 cut(s) 222, 299
BmrFI CCNGG 1 cut(s) 315
BmrI ACTGGG 1 cut(s) 390
BmsI GCATC 1 cut(s) 134
BmtI GCTAGC 1 cut(s) 78
BmuI ACTGGG 1 cut(s) 390
BpiI GAAGAC 1 cut(s) 327
BpmI CTGGAG 1 cut(s) 336
BsaHI GRCGYC 1 cut(s) 310
BsaI GGTCTC 1 cut(s) 115
BsaJI CCNNGG 3 cut(s) 224, 339, 433
BsaXI ACNNNNNCTCC 4 cut(s) 243, 273, 399, 429
Bse1I ACTGG 2 cut(s) 254, 385
Bse3DI GCAATG 1 cut(s) 159
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 3 cut(s) 224, 339, 433
BseGI GGATG 1 cut(s) 46
BseMI GCAATG 1 cut(s) 159
BseNI ACTGG 2 cut(s) 254, 385
BseRI GAGGAG 1 cut(s) 341
BseSI GKGCMC 1 cut(s) 302
BseXI GCAGC 4 cut(s) 49, 58, 127, 377
BshNI GGYRCC 2 cut(s) 220, 297
BsmAI GTCTC 1 cut(s) 115
Bso31I GGTCTC 1 cut(s) 115
Bsp1286I GDGCHC 1 cut(s) 302
BspLI GGNNCC 2 cut(s) 222, 299
BspMAI CTGCAG 2 cut(s) 67, 367
BspMI ACCTGC 1 cut(s) 370
BspOI GCTAGC 1 cut(s) 78
BspQI GCTCTTC 1 cut(s) 434
BspT107I GGYRCC 2 cut(s) 220, 297
BspTNI GGTCTC 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 159
BsrI ACTGG 2 cut(s) 254, 385
BssECI CCNNGG 3 cut(s) 224, 339, 433
BssNI GRCGYC 1 cut(s) 310
BssT1I CCWWGG 3 cut(s) 224, 339, 433
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 3 cut(s) 215, 404, 415
Bst6I CTCTTC 2 cut(s) 57, 434
BstACI GRCGYC 1 cut(s) 310
BstAPI GCANNNNNTGC 1 cut(s) 71
BstC8I GCNNGC 2 cut(s) 76, 425
BstDEI CTNAG 1 cut(s) 175
BstF5I GGATG 1 cut(s) 46
BstMAI GTCTC 1 cut(s) 115
BstMWI GCNNNNNNNGC 3 cut(s) 68, 71, 149
BstNI CCWGG 1 cut(s) 315
BstNSI RCATGY 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 313
BstSFI CTRYAG 2 cut(s) 63, 363
BstSLI GKGCMC 1 cut(s) 302
BstV1I GCAGC 4 cut(s) 49, 58, 127, 377
BstV2I GAAGAC 1 cut(s) 327
BstXI CCANNNNNNTGG 1 cut(s) 217
BtsCI GGATG 1 cut(s) 46
BtsIMutI CAGTG 1 cut(s) 220
BveI ACCTGC 1 cut(s) 370
Cac8I GCNNGC 2 cut(s) 76, 425
CaiI CAGNNNCTG 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 207
Csp6I GTAC 1 cut(s) 6
CviAII CATG 1 cut(s) 180
CviJI RGCY 6 cut(s) 62, 71, 229, 322, 368, 423
CviKI_1 RGCY 6 cut(s) 62, 71, 229, 322, 368, 423
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 1 cut(s) 175
Eam1104I CTCTTC 2 cut(s) 57, 434
EarI CTCTTC 2 cut(s) 57, 434
Eco130I CCWWGG 3 cut(s) 224, 339, 433
Eco31I GGTCTC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 313
EcoT14I CCWWGG 3 cut(s) 224, 339, 433
ErhI CCWWGG 3 cut(s) 224, 339, 433
FaeI CATG 1 cut(s) 183
FaiI YATR 7 cut(s) 131, 133, 181, 203, 233, 355, 442
FatI CATG 1 cut(s) 179
Fnu4HI GCNGC 4 cut(s) 63, 72, 141, 366
FokI GGATG 1 cut(s) 33
Fsp4HI GCNGC 4 cut(s) 63, 72, 141, 366
FspBI CTAG 2 cut(s) 75, 294
GluI GCNGC 4 cut(s) 63, 72, 141, 366
GsuI CTGGAG 1 cut(s) 336
Hin1I GRCGYC 1 cut(s) 310
Hin1II CATG 1 cut(s) 183
HinfI GANTC 3 cut(s) 17, 157, 238
Hpy188I TCNGA 1 cut(s) 263
Hpy188III TCNNGA 1 cut(s) 14
Hpy99I CGWCG 1 cut(s) 404
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 3 cut(s) 215, 404, 415
HpyCH4IV ACGT 1 cut(s) 310
HpyCH4V TGCA 4 cut(s) 65, 125, 152, 365
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 71, 149
HpyF3I CTNAG 1 cut(s) 175
HpySE526I ACGT 1 cut(s) 310
Hsp92I GRCGYC 1 cut(s) 310
Hsp92II CATG 1 cut(s) 183
LguI GCTCTTC 1 cut(s) 434
LmnI GCTCC 2 cut(s) 68, 437
LpnPI CCDG 8 cut(s) 51, 87, 267, 300, 327, 336, 366, 375
Lsp1109I GCAGC 4 cut(s) 49, 58, 127, 377
LweI GCATC 1 cut(s) 134
MaeI CTAG 2 cut(s) 75, 294
MaeII ACGT 1 cut(s) 310
MaeIII GTNAC 1 cut(s) 409
MboII GAAGA 3 cut(s) 44, 327, 421
MhlI GDGCHC 1 cut(s) 302
MlyI GAGTC 1 cut(s) 232
MnlI CCTC 6 cut(s) 60, 103, 254, 319, 322, 379
MroXI GAANNNNTTC 1 cut(s) 255
MslI CAYNNNNRTG 2 cut(s) 184, 352
MspR9I CCNGG 1 cut(s) 315
MvaI CCWGG 1 cut(s) 315
MwoI GCNNNNNNNGC 3 cut(s) 68, 71, 149
NheI GCTAGC 1 cut(s) 74
NlaIII CATG 1 cut(s) 183
NlaIV GGNNCC 2 cut(s) 222, 299
NmuCI GTSAC 1 cut(s) 409
NspI RCATGY 1 cut(s) 183
PciSI GCTCTTC 1 cut(s) 434
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 2 cut(s) 17, 157
PfoI TCCNGGA 1 cut(s) 313
PkrI GCNGC 4 cut(s) 64, 73, 142, 367
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 313
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 2 cut(s) 222, 299
PspPI GGNCC 1 cut(s) 207
PstI CTGCAG 2 cut(s) 67, 367
PstNI CAGNNNCTG 1 cut(s) 71
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
RseI CAYNNNNRTG 2 cut(s) 184, 352
SapI GCTCTTC 1 cut(s) 434
SatI GCNGC 4 cut(s) 63, 72, 141, 366
Sau96I GGNCC 1 cut(s) 207
SchI GAGTC 1 cut(s) 232
ScrFI CCNGG 1 cut(s) 315
SduI GDGCHC 1 cut(s) 302
SetI ASST 8 cut(s) 64, 73, 151, 226, 299, 313, 333, 364
SfaNI GCATC 1 cut(s) 134
SfcI CTRYAG 2 cut(s) 63, 363
SinI GGWCC 1 cut(s) 207
SmiMI CAYNNNNRTG 2 cut(s) 184, 352
SspMI CTAG 2 cut(s) 75, 294
StyD4I CCNGG 1 cut(s) 313
StyI CCWWGG 3 cut(s) 224, 339, 433
TaaI ACNGT 3 cut(s) 215, 404, 415
TaiI ACGT 1 cut(s) 313
TaqI TCGA 1 cut(s) 399
TfiI GAWTC 2 cut(s) 17, 157
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 4 cut(s) 62, 71, 140, 365
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 3 cut(s) 170, 282, 302
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 207
XceI RCATGY 1 cut(s) 183
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 2 cut(s) 75, 294
ZraI GACGTC 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.