Rorug05G0389700

Tropinone reductase homolog At1g07440-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
53007728 .. 53011937
4210 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0389700.1

Sequence Viewer

Length: 2958 bp
ATGCTTTTTTCACTGAAAAATCTAGCCAAATCTTCTTCTCATAGGACCAAGTCACTTGGCATCCTCGCCGGCATTGATTCAACTTCAATTCCATTCACCACCACCGCCGCCGCCGCAACAACCACCACTACAACGTGCCTGATCCCGGCCAAGGACATCGTCCTCTCCTTCAAGCAATGGTTCAAGTCCGGCAACCGCCTCCCCCTCCACCAAATCTTCCAAATCCTCAAAGCCACCTCCGACAGCGACCACTTCAACCACCACCACCAGCACTCCTCCGCCGACCTCGCCCTCTCGCATCTCGACCTCCACCTCTCCGAGGCTTTAGTGCTCGAGGTGCTCCGCTACGGCCACGAGCACGAGCACGACGTCCTCTCCTGCCTCAAGTTCTTCGACTGGGTCGGCCGCCAGAACAGGTTCTACCACACGCGCGCCACCTTCAACGCCATTTTCAAGATCCTCTCACGCGCCAAGCTCATGTCCCTCATGCTCGACTTCCTCGCCAACTTCCGCAGGCACAAGTTCGACGACCACGGCGTTCGGTTTCATGATACATTGGTCATGGGCTACGCCGTCTCCGGCAAGCCTGAAGTTGCGTTGCAGCTGTTCGGCAGAATGCGCTTTCAGGGACTCGACTTGGATGCTTTTGGCTACCATGTGCTTTTGAATGCTCTGGTGGAGGAGAAGTGTTTCGACGCCGTCGAGGTCGTAGCTAATCAGATTTCCATGAGGGGTTTCGAGAATGAAATCACGCATTCCGTCATGCTCAAGTGGTTCTGCAAGCGGAACTTGTTGGATGAGGCGGAGGGGTATCTGAGAAGATTAGTGACTGAGGGAAAGGCCAATGGCTCTGCGGTGGGGGTTCTTGTTCGTGCATTGTGTCAGCATAAGATGTTCGAGCGTGCTACTAAGTTGATGGATGAGTTTCGGGACTTGGGGGTGGTTTCTATGGAGAGTGCTTATGCTGTGTGGATTGGAGACCTTGCGCAGGCTGGGAGGTTAGATCAAGCATTGGAGTTTTTACAGAGCAAGAAGTCATTGGAAGGGTATGTTCCCGATGTGTTTAGGTACAATATTTTGATTGGTAAACTTTTGAGGGAGGTTAGACTCGAGGAGGTTTGTGATCTCATGTTGGAGATGAAGGAGCGTGAGATATCACCCGATACGGTCACTATGAATGCTGCATTGTGCTTCTTTTGCAAAGTGGGAATGCTGGATATCGCGATTGAGTTGTATGATTCAAGGTCTGAGTTTGGGCTCACCCCCAATAGCATGGCTTACAACTATTTGATCAATACTTTCTGCGGGGATGGCAGTGTTGACGAAGCATATGGAGTGTTGAAATCCTCTCTTGACCAAGGTTACTTTCCAGGTAGGAAAACATTTTCTATATTGGCAGATGCTTTGTGCAGAGAGGGAAAGCTTGATAAGATGAAGGAGTTGGTTATTTTTGCTTTAGAGCGGAATATTATGCCGAGTGGTTCCACCTATGACAAGTTCATTACAACTCTTTGCAAAACTAGGAGGGTAGAAGACGGTTATTTGATACATGAGGAACTTAACAGAATAAGTGAAGTTCGTAGAGAGAGTACATACATCAACTTGATTGAAGGTTTTTGCAAGTTAAATAAGGGTGACATTGCCGCTAGACTTCTGATTGAAATGCAAGTACATGGTCACTCACCAACTCATAAGCTGTTCCGAGATGTAATTTGCTCTTTATGTGATACGGGAAATCCGGTAAATACAGACCAGCAATTTTTCACCTTATTGGAGATGCAGTTGTCTTGCCGGGAACCTACTTGTCGTATATACAACTTCTTCATCTATGGAGCTGGGCATGCCAAAAGGCCTGATTTGGCTAGTAAAGTATTAGAGATGATGCAGCGTAGTGGGATTGAACCTAATTTGAGTTCTGATGTTCTTATGTTGCAGAGTTATTTGAAGAGTGAACGATATTCGGATGCTTTGAACTACTTCAATGATCTGCGTCACAGAAGAAAGATAAGGAGAAGACTTTACAGTGCCATGATTACTGGTATGTGCAAGGCTAAAAAAGCAGATATTGCACTTAACTTACTTAGGGAAATGAGAGAGAACGGAATGGTTCCGAGCGATGACTGCTATGAGTTTCTTATACAATTGCTCTGCTGGAATAAAGAATACGATATAGCAGTAATCCTCATTAAGGACTTAGAGAAAGTCGGCCGCCACATTACATCCTTTATTGGCAACATACTTCTGTTGCATTCTTTGAAAAGTCAAGAGCTGTACCAGGCTTGGGTTCGTCTAAGAGAGGTGCAAATCGAGATCTCTGATAATTCAATCCTTGGTCTGCTTATTGGTGCATTTTCTGGTCGTATTTGGGTGAGCCAACAGATTGAGAACTTGGAAGAAGTAATTGCTAGCTGCTTTCCGCTAGACGTGTACACATACAATTTATTACTTAGATGTTTCAGTAATAGCAACATGGACCATGCTTGTGCATTGTTCTATAGGATGTCACAGAAAGGGTATGAGCCCAATCGATGGACTTATGAAATCTTAGTACAAGGTTTTCTTAAGCATGGGAGGACAGACGAGGCAAACAGATGGCTAAAAGCTATAGCTTGCCGTGGGAAATACTGTGAGGTGAGTAGAGCGGAGGATCTTTCTCTCACCACAGCTGCTATGGCTGGGTTTACTGTTAGCGATGATGAAGATATGTTGCAGCAGCTGCAAGAAGCACACTGCATCTGCCTTCCCGGCAATGCCTTCTTGAAGACATACTTGATGCAGCAGCTATCCCTCACACTTCTTCATCTGGGGGTGATTCTGAAGGGAAAAGTAAATCTGCTGATAAATTCTAGAAGCTGGAAGCTGAAGCATGATGATGCAGGACAAGATGTCATTGGAGCAGTCAATGAACTTATTCATATATTGGCACTTGCCATGAATAGATTGCTGAGCAAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

985

Amino Acids

112.38

Weight (kDa)

7.03

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 352 - 401 4.9e-09 PPR repeat family
PPR_2 PF13041 387 - 435 4.6e-10 PPR repeat family
PPR_1 PF12854 419 - 448 6.4e-06 PPR repeat
PPR_2 PF13041 422 - 471 1.1e-07 PPR repeat family
PPR_2 PF13041 674 - 717 6.7e-08 PPR repeat family
PPR_2 PF13041 808 - 855 4.9e-09 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 372
Acc16I TGCGCA 1 cut(s) 987
AccB7I CCANNNNNTGG 1 cut(s) 2529
AccBSI CCGCTC 2 cut(s) 1462, 2642
AccII CGCG 4 cut(s) 430, 432, 468, 1223
AclWI GGATC 3 cut(s) 136, 451, 2655
AcoI YGGCCR 4 cut(s) 147, 349, 403, 2206
AcsI RAATTY 1 cut(s) 2842
AcuI CTGAAG 3 cut(s) 609, 2837, 2882
AcyI GRCGYC 2 cut(s) 369, 696
AfaI GTAC 6 cut(s) 1070, 1591, 1671, 2273, 2429, 2550
AfiI CCNNNNNNNGG 7 cut(s) 145, 151, 319, 988, 2188, 2281, 2529
AflII CTTAAG 1 cut(s) 2561
AflIII ACRYGT 1 cut(s) 2424
AhdI GACNNNNNGTC 1 cut(s) 2885
AjiI CACGTC 1 cut(s) 2425
AjnI CCWGG 2 cut(s) 1369, 2274
AjuI GAANNNNNNNTTGG 2 cut(s) 1350, 1382
Alw21I GWGCWC 4 cut(s) 333, 342, 360, 366
Alw26I GTCTC 2 cut(s) 580, 972
AlwI GGATC 3 cut(s) 136, 451, 2655
AlwNI CAGNNNCTG 1 cut(s) 2716
Ama87I CYCGRG 2 cut(s) 332, 1109
AoxI GGCC 6 cut(s) 147, 349, 403, 840, 1850, 2206
ApoI RAATTY 1 cut(s) 2842
Asp700I GAANNNNTTC 4 cut(s) 416, 689, 1976, 2910
AspLEI GCGC 5 cut(s) 432, 434, 470, 621, 988
AspS9I GGNCC 2 cut(s) 45, 2473
AsuC2I CCSGG 3 cut(s) 146, 1793, 2745
AsuNHI GCTAGC 1 cut(s) 2405
AvaI CYCGRG 2 cut(s) 332, 1109
AvaII GGWCC 2 cut(s) 45, 2473
BaeI ACNNNNGTAYC 2 cut(s) 543, 576
BanII GRGCYC 2 cut(s) 1260, 2523
BauI CACGAG 2 cut(s) 353, 359
BbsI GAAGAC 3 cut(s) 1539, 2020, 2768
Bbv12I GWGCWC 4 cut(s) 333, 342, 360, 366
BccI CCATC 4 cut(s) 910, 1304, 2523, 2586
BceAI ACGGC 5 cut(s) 364, 550, 557, 683, 2598
BcgI CGANNNNNNTGC 2 cut(s) 623, 657
BciT130I CCWGG 2 cut(s) 1371, 2276
BclI TGATCA 1 cut(s) 1290
BcnI CCSGG 3 cut(s) 146, 1793, 2745
BcoDI GTCTC 2 cut(s) 580, 972
BfaI CTAG 7 cut(s) 23, 1521, 1647, 1863, 2406, 2420, 2847
BfmI CTRYAG 2 cut(s) 2494, 2604
BfrI CTTAAG 1 cut(s) 2561
BglI GCCNNNNNGGC 1 cut(s) 2745
BglII AGATCT 1 cut(s) 2310
BlpI GCTNAGC 1 cut(s) 2945
Bme1390I CCNGG 5 cut(s) 146, 1371, 1793, 2276, 2745
Bme18I GGWCC 2 cut(s) 45, 2473
BmeRI GACNNNNNGTC 1 cut(s) 2885
BmeT110I CYCGRG 2 cut(s) 332, 1109
BmgBI CACGTC 1 cut(s) 2425
BmgT120I GGNCC 2 cut(s) 45, 2473
BmiI GGNNCC 3 cut(s) 1483, 1797, 2109
BmrFI CCNGG 5 cut(s) 146, 1371, 1793, 2276, 2745
BmrI ACTGGG 1 cut(s) 406
BmtI GCTAGC 1 cut(s) 2409
BmuI ACTGGG 1 cut(s) 406
BpiI GAAGAC 3 cut(s) 1539, 2020, 2768
Bpu1102I GCTNAGC 1 cut(s) 2945
BpuEI CTTGAG 2 cut(s) 368, 752
BpuMI CCSGG 3 cut(s) 146, 1793, 2745
Bsa29I ATCGAT 1 cut(s) 2527
BsaHI GRCGYC 2 cut(s) 369, 696
BsaI GGTCTC 1 cut(s) 972
BsaJI CCNNGG 6 cut(s) 150, 318, 532, 1357, 2329, 2614
BsaWI WCCGGW 1 cut(s) 1738
Bsc4I CCNNNNNNNGG 7 cut(s) 145, 151, 319, 988, 2188, 2281, 2529
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 2 cut(s) 401, 2041
Bse3DI GCAATG 3 cut(s) 182, 1638, 2755
BseBI CCWGG 2 cut(s) 1371, 2276
BseCI ATCGAT 1 cut(s) 2527
BseDI CCNNGG 6 cut(s) 150, 318, 532, 1357, 2329, 2614
BseGI GGATG 8 cut(s) 60, 646, 802, 925, 1315, 1969, 2219, 2505
BseLI CCNNNNNNNGG 7 cut(s) 145, 151, 319, 988, 2188, 2281, 2529
BseMI GCAATG 3 cut(s) 182, 1638, 2755
BseMII CTCAG 4 cut(s) 806, 822, 1239, 2936
BseNI ACTGG 2 cut(s) 401, 2041
BsePI GCGCGC 1 cut(s) 430
BseRI GAGGAG 3 cut(s) 265, 695, 1127
BseX3I CGGCCG 2 cut(s) 403, 2206
BseYI CCCAGC 3 cut(s) 992, 1835, 2675
BsgI GTGCAG 1 cut(s) 1429
Bsh1236I CGCG 4 cut(s) 430, 432, 468, 1223
Bsh1285I CGRYCG 2 cut(s) 406, 2209
BshFI GGCC 6 cut(s) 149, 351, 405, 842, 1852, 2208
BshVI ATCGAT 1 cut(s) 2527
BsiEI CGRYCG 2 cut(s) 406, 2209
BsiHKAI GWGCWC 4 cut(s) 333, 342, 360, 366
BsiHKCI CYCGRG 2 cut(s) 332, 1109
BsiSI CCGG 7 cut(s) 69, 146, 189, 579, 1739, 1792, 2745
BslFI GGGAC 3 cut(s) 466, 642, 944
BslI CCNNNNNNNGG 7 cut(s) 145, 151, 319, 988, 2188, 2281, 2529
BsmAI GTCTC 2 cut(s) 580, 972
BsmBI CGTCTC 1 cut(s) 580
BsmFI GGGAC 3 cut(s) 466, 642, 944
BsmI GAATGC 6 cut(s) 621, 673, 754, 1183, 1215, 2248
BsnI GGCC 6 cut(s) 149, 351, 405, 842, 1852, 2208
Bso31I GGTCTC 1 cut(s) 972
BsoBI CYCGRG 2 cut(s) 332, 1109
Bsp1286I GDGCHC 6 cut(s) 333, 342, 360, 366, 1260, 2523
Bsp1407I TGTACA 1 cut(s) 2427
Bsp143I GATC 8 cut(s) 141, 456, 1003, 1123, 1290, 1984, 2310, 2647
Bsp1720I GCTNAGC 1 cut(s) 2945
Bsp68I TCGCGA 1 cut(s) 1223
BspANI GGCC 6 cut(s) 149, 351, 405, 842, 1852, 2208
BspCNI CTCAG 4 cut(s) 807, 823, 1240, 2937
BspDI ATCGAT 1 cut(s) 2527
BspFNI CGCG 4 cut(s) 430, 432, 468, 1223
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 3 cut(s) 1483, 1797, 2109
BspOI GCTAGC 1 cut(s) 2409
BspPI GGATC 3 cut(s) 136, 451, 2655
BspTI CTTAAG 1 cut(s) 2561
BspTNI GGTCTC 1 cut(s) 972
BsrBI CCGCTC 2 cut(s) 1462, 2642
BsrDI GCAATG 3 cut(s) 182, 1638, 2755
BsrFI RCCGGY 1 cut(s) 68
BsrGI TGTACA 1 cut(s) 2427
BsrI ACTGG 2 cut(s) 401, 2041
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 6 cut(s) 150, 318, 532, 1357, 2329, 2614
BssHII GCGCGC 1 cut(s) 430
BssMI GATC 8 cut(s) 141, 456, 1003, 1123, 1290, 1984, 2310, 2647
BssNI GRCGYC 2 cut(s) 369, 696
BssSI CACGAG 2 cut(s) 353, 359
BssT1I CCWWGG 3 cut(s) 150, 1357, 2329
Bst2BI CACGAG 2 cut(s) 353, 359
Bst2UI CCWGG 2 cut(s) 1371, 2276
Bst4CI ACNGT 5 cut(s) 1168, 1538, 2024, 2627, 2686
Bst6I CTCTTC 1 cut(s) 1940
BstACI GRCGYC 2 cut(s) 369, 696
BstAFI CTTAAG 1 cut(s) 2561
BstAPI GCANNNNNTGC 2 cut(s) 2066, 2716
BstAUI TGTACA 1 cut(s) 2427
BstDSI CCRYGG 2 cut(s) 532, 2614
BstENI CCTNNNNNAGG 3 cut(s) 317, 986, 2186
BstF5I GGATG 8 cut(s) 60, 646, 802, 925, 1315, 1969, 2219, 2505
BstFNI CGCG 4 cut(s) 430, 432, 468, 1223
BstHHI GCGC 5 cut(s) 432, 434, 470, 621, 988
BstKTI GATC 8 cut(s) 144, 459, 1006, 1126, 1293, 1987, 2313, 2650
BstMAI GTCTC 2 cut(s) 580, 972
BstMBI GATC 8 cut(s) 141, 456, 1003, 1123, 1290, 1984, 2310, 2647
BstMCI CGRYCG 2 cut(s) 406, 2209
BstNI CCWGG 2 cut(s) 1371, 2276
BstNSI RCATGY 1 cut(s) 1844
BstSCI CCNGG 5 cut(s) 144, 1369, 1791, 2274, 2743
BstSFI CTRYAG 2 cut(s) 2494, 2604
BstUI CGCG 4 cut(s) 430, 432, 468, 1223
BstV2I GAAGAC 3 cut(s) 1539, 2020, 2768
BstX2I RGATCY 3 cut(s) 456, 2310, 2647
BstXI CCANNNNNNTGG 1 cut(s) 1273
BstYI RGATCY 3 cut(s) 456, 2310, 2647
BstZI CGGCCG 2 cut(s) 403, 2206
Bsu15I ATCGAT 1 cut(s) 2527
BsuRI GGCC 6 cut(s) 149, 351, 405, 842, 1852, 2208
BsuTUI ATCGAT 1 cut(s) 2527
BtgI CCRYGG 2 cut(s) 532, 2614
BtgZI GCGATG 2 cut(s) 2130, 2706
BtrI CACGTC 1 cut(s) 2425
BtsCI GGATG 8 cut(s) 60, 646, 802, 925, 1315, 1969, 2219, 2505
BtsI GCAGTG 2 cut(s) 1321, 2728
BtsIMutI CAGTG 4 cut(s) 11, 1321, 2029, 2728
BtuMI TCGCGA 1 cut(s) 1223
CaiI CAGNNNCTG 1 cut(s) 2716
CciI TCATGA 1 cut(s) 547
CfoI GCGC 5 cut(s) 432, 434, 470, 621, 988
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 2 cut(s) 45, 2473
ClaI ATCGAT 1 cut(s) 2527
CseI GACGC 2 cut(s) 704, 1979
Csp6I GTAC 6 cut(s) 1069, 1590, 1670, 2272, 2428, 2549
CviQI GTAC 6 cut(s) 1069, 1590, 1670, 2272, 2428, 2549
DpnI GATC 8 cut(s) 143, 458, 1005, 1125, 1292, 1986, 2312, 2649
DpnII GATC 8 cut(s) 141, 456, 1003, 1123, 1290, 1984, 2310, 2647
DriI GACNNNNNGTC 1 cut(s) 2885
EaeI YGGCCR 4 cut(s) 147, 349, 403, 2206
EagI CGGCCG 2 cut(s) 403, 2206
Eam1104I CTCTTC 1 cut(s) 1940
Eam1105I GACNNNNNGTC 1 cut(s) 2885
EarI CTCTTC 1 cut(s) 1940
EciI GGCGGA 2 cut(s) 268, 818
EclXI CGGCCG 2 cut(s) 403, 2206
Eco130I CCWWGG 3 cut(s) 150, 1357, 2329
Eco147I AGGCCT 1 cut(s) 1852
Eco24I GRGCYC 2 cut(s) 1260, 2523
Eco31I GGTCTC 1 cut(s) 972
Eco32I GATATC 2 cut(s) 1155, 1219
Eco47I GGWCC 2 cut(s) 45, 2473
Eco52I CGGCCG 2 cut(s) 403, 2206
Eco57I CTGAAG 3 cut(s) 609, 2837, 2882
Eco88I CYCGRG 2 cut(s) 332, 1109
EcoNI CCTNNNNNAGG 3 cut(s) 317, 986, 2186
EcoRII CCWGG 2 cut(s) 1369, 2274
EcoRV GATATC 2 cut(s) 1155, 1219
EcoT14I CCWWGG 3 cut(s) 150, 1357, 2329
EcoT38I GRGCYC 2 cut(s) 1260, 2523
ErhI CCWWGG 3 cut(s) 150, 1357, 2329
Esp3I CGTCTC 1 cut(s) 580
FalI AAGNNNNNCTT 6 cut(s) 773, 805, 2544, 2576, 2753, 2785
FaqI GGGAC 3 cut(s) 466, 642, 944
FauI CCCGC 1 cut(s) 1298
FauNDI CATATG 1 cut(s) 1330
FbaI TGATCA 1 cut(s) 1290
FokI GGATG 8 cut(s) 47, 653, 809, 932, 1322, 1976, 2206, 2512
FriOI GRGCYC 2 cut(s) 1260, 2523
FspBI CTAG 7 cut(s) 23, 1521, 1647, 1863, 2406, 2420, 2847
FspI TGCGCA 1 cut(s) 987
GlaI GCGC 5 cut(s) 431, 433, 469, 620, 987
GsaI CCCAGC 3 cut(s) 996, 1839, 2679
HaeIII GGCC 6 cut(s) 149, 351, 405, 842, 1852, 2208
HapII CCGG 7 cut(s) 69, 146, 189, 579, 1739, 1792, 2745
HgaI GACGC 2 cut(s) 704, 1979
HhaI GCGC 5 cut(s) 432, 434, 470, 621, 988
Hin1I GRCGYC 2 cut(s) 369, 696
Hin6I GCGC 5 cut(s) 430, 432, 468, 619, 986
HinP1I GCGC 5 cut(s) 430, 432, 468, 619, 986
HincII GTYRAC 1 cut(s) 1321
HindII GTYRAC 1 cut(s) 1321
HindIII AAGCTT 1 cut(s) 1421
HinfI GANTC 5 cut(s) 77, 630, 1107, 1238, 2812
HpaII CCGG 7 cut(s) 69, 146, 189, 579, 1739, 1792, 2745
Hpy166II GTNNAC 6 cut(s) 1088, 1321, 1952, 2428, 2430, 2682
Hpy8I GTNNAC 6 cut(s) 1088, 1321, 1952, 2428, 2430, 2682
Hpy99I CGWCG 4 cut(s) 371, 530, 698, 704
HpyAV CCTTC 9 cut(s) 178, 448, 1037, 1135, 1429, 1604, 2750, 2764, 2812
HpyCH4III ACNGT 5 cut(s) 1168, 1538, 2024, 2627, 2686
HpyCH4IV ACGT 3 cut(s) 134, 369, 2424
HpySE526I ACGT 3 cut(s) 134, 369, 2424
Hsp92I GRCGYC 2 cut(s) 369, 696
HspAI GCGC 5 cut(s) 430, 432, 468, 619, 986
KroI GCCGGC 1 cut(s) 68
KroNI GCCGGC 1 cut(s) 70
Ksp22I TGATCA 1 cut(s) 1290
Kzo9I GATC 8 cut(s) 141, 456, 1003, 1123, 1290, 1984, 2310, 2647
LmnI GCTCC 4 cut(s) 345, 1144, 1832, 2894
MaeI CTAG 7 cut(s) 23, 1521, 1647, 1863, 2406, 2420, 2847
MaeII ACGT 3 cut(s) 134, 369, 2424
MaeIII GTNAC 8 cut(s) 51, 826, 1168, 1361, 1634, 1676, 1991, 2502
MalI GATC 8 cut(s) 143, 458, 1005, 1125, 1292, 1986, 2312, 2649
MbiI CCGCTC 2 cut(s) 1462, 2642
MboI GATC 8 cut(s) 141, 456, 1003, 1123, 1290, 1984, 2310, 2647
MfeI CAATTG 1 cut(s) 2141
MflI RGATCY 3 cut(s) 456, 2310, 2647
MhlI GDGCHC 6 cut(s) 333, 342, 360, 366, 1260, 2523
MluCI AATT 9 cut(s) 87, 1710, 1757, 1906, 2141, 2320, 2400, 2437, 2842
MlyI GAGTC 2 cut(s) 624, 1101
MmeI TCCRAC 3 cut(s) 264, 774, 1113
MroNI GCCGGC 1 cut(s) 68
MroXI GAANNNNTTC 4 cut(s) 416, 689, 1976, 2910
MseI TTAA 5 cut(s) 1560, 1625, 2073, 2187, 2562
MslI CAYNNNNRTG 2 cut(s) 2481, 2871
MspA1I CMGCKG 3 cut(s) 604, 2666, 2716
MspCI CTTAAG 1 cut(s) 2561
MspI CCGG 7 cut(s) 69, 146, 189, 579, 1739, 1792, 2745
MspR9I CCNGG 5 cut(s) 146, 1371, 1793, 2276, 2745
MunI CAATTG 1 cut(s) 2141
Mva1269I GAATGC 6 cut(s) 621, 673, 754, 1183, 1215, 2248
MvaI CCWGG 2 cut(s) 1371, 2276
MvnI CGCG 4 cut(s) 430, 432, 468, 1223
NaeI GCCGGC 1 cut(s) 70
NciI CCSGG 3 cut(s) 146, 1793, 2745
NdeI CATATG 1 cut(s) 1330
NdeII GATC 8 cut(s) 141, 456, 1003, 1123, 1290, 1984, 2310, 2647
NgoMIV GCCGGC 1 cut(s) 68
NheI GCTAGC 1 cut(s) 2405
NlaIV GGNNCC 3 cut(s) 1483, 1797, 2109
NmeAIII GCCGAG 1 cut(s) 1500
NmuCI GTSAC 7 cut(s) 51, 826, 1168, 1634, 1676, 1991, 2502
NruI TCGCGA 1 cut(s) 1223
NsbI TGCGCA 1 cut(s) 987
NspI RCATGY 1 cut(s) 1844
PaeI GCATGC 1 cut(s) 1844
PaeR7I CTCGAG 2 cut(s) 332, 1109
PagI TCATGA 1 cut(s) 547
PauI GCGCGC 1 cut(s) 430
PceI AGGCCT 1 cut(s) 1852
PcsI WCGNNNNNNNCGW 3 cut(s) 366, 534, 699
PctI GAATGC 6 cut(s) 621, 673, 754, 1183, 1215, 2248
PdiI GCCGGC 1 cut(s) 70
PdmI GAANNNNTTC 4 cut(s) 416, 689, 1976, 2910
PfeI GAWTC 3 cut(s) 77, 1238, 2812
PflFI GACNNNGTC 4 cut(s) 49, 158, 398, 698
PflMI CCANNNNNTGG 1 cut(s) 2529
PleI GAGTC 2 cut(s) 624, 1101
PpsI GAGTC 2 cut(s) 624, 1101
Psp6I CCWGG 2 cut(s) 1369, 2274
PspFI CCCAGC 3 cut(s) 992, 1835, 2675
PspGI CCWGG 2 cut(s) 1369, 2274
PspN4I GGNNCC 3 cut(s) 1483, 1797, 2109
PspPI GGNCC 2 cut(s) 45, 2473
PspXI VCTCGAGB 2 cut(s) 332, 1109
PsrI GAACNNNNNNTAC 2 cut(s) 404, 436
PstNI CAGNNNCTG 1 cut(s) 2716
PsuI RGATCY 3 cut(s) 456, 2310, 2647
PsyI GACNNNGTC 4 cut(s) 49, 158, 398, 698
PteI GCGCGC 1 cut(s) 430
PvuII CAGCTG 3 cut(s) 604, 2666, 2716
RruI TCGCGA 1 cut(s) 1223
RsaI GTAC 6 cut(s) 1070, 1591, 1671, 2273, 2429, 2550
RsaNI GTAC 6 cut(s) 1069, 1590, 1670, 2272, 2428, 2549
RseI CAYNNNNRTG 2 cut(s) 2481, 2871
SaqAI TTAA 5 cut(s) 1560, 1625, 2073, 2187, 2562
Sau3AI GATC 8 cut(s) 141, 456, 1003, 1123, 1290, 1984, 2310, 2647
Sau96I GGNCC 2 cut(s) 45, 2473
SchI GAGTC 2 cut(s) 624, 1101
ScrFI CCNGG 5 cut(s) 146, 1371, 1793, 2276, 2745
SduI GDGCHC 6 cut(s) 333, 342, 360, 366, 1260, 2523
SfcI CTRYAG 2 cut(s) 2494, 2604
Sfr274I CTCGAG 2 cut(s) 332, 1109
SinI GGWCC 2 cut(s) 45, 2473
SlaI CTCGAG 2 cut(s) 332, 1109
SmiMI CAYNNNNRTG 2 cut(s) 2481, 2871
SmlI CTYRAG 5 cut(s) 332, 383, 767, 1109, 2561
SmoI CTYRAG 5 cut(s) 332, 383, 767, 1109, 2561
SphI GCATGC 1 cut(s) 1844
Sse9I AATT 9 cut(s) 87, 1710, 1757, 1906, 2141, 2320, 2400, 2437, 2842
SseBI AGGCCT 1 cut(s) 1852
SspI AATATT 2 cut(s) 1075, 1468
SspMI CTAG 7 cut(s) 23, 1521, 1647, 1863, 2406, 2420, 2847
StuI AGGCCT 1 cut(s) 1852
StyD4I CCNGG 5 cut(s) 144, 1369, 1791, 2274, 2743
StyI CCWWGG 3 cut(s) 150, 1357, 2329
TaaI ACNGT 5 cut(s) 1168, 1538, 2024, 2627, 2686
TaiI ACGT 3 cut(s) 137, 372, 2427
TasI AATT 9 cut(s) 87, 1710, 1757, 1906, 2141, 2320, 2400, 2437, 2842
TatI WGTACW 4 cut(s) 1589, 1669, 2427, 2548
TauI GCSGC 6 cut(s) 110, 113, 116, 408, 1646, 2211
TfiI GAWTC 3 cut(s) 77, 1238, 2812
Tru1I TTAA 5 cut(s) 1560, 1625, 2073, 2187, 2562
Tru9I TTAA 5 cut(s) 1560, 1625, 2073, 2187, 2562
TscAI CASTG 4 cut(s) 18, 1321, 2029, 2735
TseFI GTSAC 7 cut(s) 51, 826, 1168, 1634, 1676, 1991, 2502
Tsp45I GTSAC 7 cut(s) 51, 826, 1168, 1634, 1676, 1991, 2502
TspGWI ACGGA 2 cut(s) 748, 2115
TspRI CASTG 4 cut(s) 18, 1321, 2029, 2735
Tth111I GACNNNGTC 4 cut(s) 49, 158, 398, 698
Van91I CCANNNNNTGG 1 cut(s) 2529
Vha464I CTTAAG 1 cut(s) 2561
VpaK11BI GGWCC 2 cut(s) 45, 2473
XagI CCTNNNNNAGG 3 cut(s) 317, 986, 2186
XapI RAATTY 1 cut(s) 2842
XbaI TCTAGA 1 cut(s) 2846
XceI RCATGY 1 cut(s) 1844
XcmI CCANNNNNNNNNTGG 1 cut(s) 2668
XhoI CTCGAG 2 cut(s) 332, 1109
XmnI GAANNNNTTC 4 cut(s) 416, 689, 1976, 2910
XspI CTAG 7 cut(s) 23, 1521, 1647, 1863, 2406, 2420, 2847
ZraI GACGTC 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.