AT2G29310

tropinone reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000208
Physical Location & Seq
Forward (+)
12589866 .. 12591487
1622 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G29310.1

Sequence Viewer

Length: 789 bp
ATGGATAAGAGATGGAGTCTACAAGGTATGACTGCTCTTGTAACCGGTGCAGCCAGTGGAATCGGGTATGCCATAGTAGAGGAGTTAGCAAGTTTTGGAGCTATAATCCATATATGTGACATCTCTGAAACTCTTCTCAGTCAAAGTTTAAGTGAATGGGAAAAGAAAGGGTTTCAAGTGAGTGGTTCAATCTGTGATGTAGCTTCTCGGCCCGATAGAGAAAAACTGATGCAAACCGTCTCCTCGCTGTTTGATGGCAAACTCAACATTCTTGTAAACAATGTTGGTGTAATACGTGGAAAGCCAACAACAGAATATGTGGCAGAGGATTTCTCTTACCACATCTCAACAAATTTGGAACCAGCTTTCCATTTTAGCCAGCTTTCACATCTTCTTTTAAAGGCTTCAGGATTTGGAAGCATCGTCTTTATGTCCTCTGCTACAGGGGTTGTATCAGTTCAATGTGGATCCATTTATAGTCTAACTAAAGGAGCTTTGAACCAGTTAACTAGAAATTTAGCATGTGAATGGGCAAAAGACGGCATAAGAGCCAATGCTGTTGCACCTAATGTTGTCAAGACTCCTTTGTCTCAATCTTATCTCGAGGACGTCGGTTTCAAGGAGGCATTGTTCAGTAGAACTCCACTTGGTCGCGCTGGAGAGCCGAATGAAGTTGCATCACTAGTGGTCTTCTTGTGTCTACCAGCAGCTTCTTATATTACTGGTCAAACCATTTGTATTGATGGTGGTTTCACTGTTAATGCCTTCTCTTATAAGCCACAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

262

Amino Acids

28.09

Weight (kDa)

5.83

Isoelectric Point (pI)

34.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 11 - 202 1.5e-45 short chain dehydrogenase
KR PF08659 11 - 188 1.3e-08 KR domain
adh_short_C2 PF13561 16 - 252 4e-57 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 774
AasI GACNNNNNNGTC 1 cut(s) 586
AatII GACGTC 1 cut(s) 612
AccI GTMKAC 2 cut(s) 19, 700
AccII CGCG 1 cut(s) 654
AclWI GGATC 2 cut(s) 462, 475
AcsI RAATTY 2 cut(s) 352, 514
AcuI CTGAAG 1 cut(s) 390
AcyI GRCGYC 1 cut(s) 609
AgeI ACCGGT 1 cut(s) 44
AgsI TTSAA 5 cut(s) 176, 189, 461, 499, 619
AhlI ACTAGT 1 cut(s) 682
AloI GAACNNNNNNTCC 4 cut(s) 351, 383, 614, 646
AluBI AGCT 6 cut(s) 101, 203, 365, 382, 494, 710
AluI AGCT 6 cut(s) 101, 203, 365, 382, 494, 710
Alw26I GTCTC 2 cut(s) 244, 594
AlwI GGATC 2 cut(s) 462, 475
Ama87I CYCGRG 1 cut(s) 602
AoxI GGCC 1 cut(s) 209
ApeKI GCWGC 2 cut(s) 50, 707
ApoI RAATTY 2 cut(s) 352, 514
AsiGI ACCGGT 1 cut(s) 44
Asp700I GAANNNNTTC 1 cut(s) 132
AspLEI GCGC 1 cut(s) 656
AspS9I GGNCC 1 cut(s) 210
AvaI CYCGRG 1 cut(s) 602
BamHI GGATCC 1 cut(s) 467
BbsI GAAGAC 1 cut(s) 682
BbvI GCAGC 2 cut(s) 62, 719
BccI CCATC 3 cut(s) 6, 248, 737
BceAI ACGGC 1 cut(s) 556
BcoDI GTCTC 2 cut(s) 244, 594
BcuI ACTAGT 1 cut(s) 682
BfaI CTAG 2 cut(s) 510, 683
BfmI CTRYAG 1 cut(s) 441
BisI GCNGC 2 cut(s) 51, 708
BlsI GCNGC 2 cut(s) 52, 709
BmeT110I CYCGRG 1 cut(s) 602
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 2 cut(s) 360, 469
BmsI GCATC 3 cut(s) 219, 429, 686
BpiI GAAGAC 1 cut(s) 682
BplI GAGNNNNNCTC 2 cut(s) 317, 349
BpmI CTGGAG 1 cut(s) 678
BsaAI YACGTR 1 cut(s) 296
BsaHI GRCGYC 1 cut(s) 609
BsaWI WCCGGW 1 cut(s) 44
BsaXI ACNNNNNCTCC 2 cut(s) 614, 644
Bse118I RCCGGY 1 cut(s) 44
Bse1I ACTGG 3 cut(s) 54, 502, 727
BseMII CTCAG 1 cut(s) 151
BseNI ACTGG 3 cut(s) 54, 502, 727
BseRI GAGGAG 2 cut(s) 95, 232
BseXI GCAGC 2 cut(s) 62, 719
BsgI GTGCAG 1 cut(s) 69
Bsh1236I CGCG 1 cut(s) 654
BshFI GGCC 1 cut(s) 211
BshTI ACCGGT 1 cut(s) 44
BsiHKCI CYCGRG 1 cut(s) 602
BsiSI CCGG 1 cut(s) 45
BsmAI GTCTC 2 cut(s) 244, 594
BsmBI CGTCTC 1 cut(s) 244
BsnI GGCC 1 cut(s) 211
BsoBI CYCGRG 1 cut(s) 602
Bsp143I GATC 1 cut(s) 467
BspANI GGCC 1 cut(s) 211
BspCNI CTCAG 1 cut(s) 150
BspFNI CGCG 1 cut(s) 654
BspLI GGNNCC 2 cut(s) 360, 469
BspPI GGATC 2 cut(s) 462, 475
BsrFI RCCGGY 1 cut(s) 44
BsrI ACTGG 3 cut(s) 54, 502, 727
BssAI RCCGGY 1 cut(s) 44
BssMI GATC 1 cut(s) 467
BssNI GRCGYC 1 cut(s) 609
Bst4CI ACNGT 2 cut(s) 238, 757
Bst6I CTCTTC 1 cut(s) 138
BstACI GRCGYC 1 cut(s) 609
BstBAI YACGTR 1 cut(s) 296
BstC8I GCNNGC 1 cut(s) 380
BstDEI CTNAG 1 cut(s) 137
BstFNI CGCG 1 cut(s) 654
BstHHI GCGC 1 cut(s) 656
BstKTI GATC 1 cut(s) 470
BstMAI GTCTC 2 cut(s) 244, 594
BstMBI GATC 1 cut(s) 467
BstNSI RCATGY 1 cut(s) 525
BstSFI CTRYAG 1 cut(s) 441
BstUI CGCG 1 cut(s) 654
BstV1I GCAGC 2 cut(s) 62, 719
BstV2I GAAGAC 1 cut(s) 682
BstX2I RGATCY 1 cut(s) 467
BstYI RGATCY 1 cut(s) 467
BsuRI GGCC 1 cut(s) 211
BtsIMutI CAGTG 2 cut(s) 61, 753
Cac8I GCNNGC 1 cut(s) 380
CfoI GCGC 1 cut(s) 656
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 1 cut(s) 210
CspAI ACCGGT 1 cut(s) 44
CviAII CATG 1 cut(s) 522
DdeI CTNAG 1 cut(s) 137
DpnI GATC 1 cut(s) 469
DpnII GATC 1 cut(s) 467
DraI TTTAAA 1 cut(s) 399
DrdI GACNNNNNNGTC 1 cut(s) 586
DseDI GACNNNNNNGTC 1 cut(s) 586
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
Eco57I CTGAAG 1 cut(s) 390
Eco88I CYCGRG 1 cut(s) 602
Esp3I CGTCTC 1 cut(s) 244
FaeI CATG 1 cut(s) 525
FatI CATG 1 cut(s) 521
FblI GTMKAC 2 cut(s) 19, 700
Fnu4HI GCNGC 2 cut(s) 51, 708
Fsp4HI GCNGC 2 cut(s) 51, 708
FspBI CTAG 2 cut(s) 510, 683
GlaI GCGC 1 cut(s) 655
GluI GCNGC 2 cut(s) 51, 708
GsuI CTGGAG 1 cut(s) 678
HaeIII GGCC 1 cut(s) 211
HapII CCGG 1 cut(s) 45
HhaI GCGC 1 cut(s) 656
Hin1I GRCGYC 1 cut(s) 609
Hin1II CATG 1 cut(s) 525
Hin6I GCGC 1 cut(s) 654
HinP1I GCGC 1 cut(s) 654
HincII GTYRAC 1 cut(s) 507
HindII GTYRAC 1 cut(s) 507
HinfI GANTC 3 cut(s) 16, 60, 580
HpaI GTTAAC 1 cut(s) 507
HpaII CCGG 1 cut(s) 45
Hpy166II GTNNAC 4 cut(s) 20, 277, 507, 701
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 3 cut(s) 408, 577, 602
Hpy8I GTNNAC 4 cut(s) 20, 277, 507, 701
Hpy99I CGWCG 1 cut(s) 614
HpyAV CCTTC 1 cut(s) 775
HpyCH4III ACNGT 2 cut(s) 238, 757
HpyCH4IV ACGT 2 cut(s) 295, 609
HpyCH4V TGCA 4 cut(s) 50, 232, 563, 677
HpyF3I CTNAG 1 cut(s) 137
HpySE526I ACGT 2 cut(s) 295, 609
Hsp92I GRCGYC 1 cut(s) 609
Hsp92II CATG 1 cut(s) 525
HspAI GCGC 1 cut(s) 654
KspAI GTTAAC 1 cut(s) 507
Kzo9I GATC 1 cut(s) 467
LmnI GCTCC 2 cut(s) 98, 491
Lsp1109I GCAGC 2 cut(s) 62, 719
LweI GCATC 3 cut(s) 219, 429, 686
MaeI CTAG 2 cut(s) 510, 683
MaeII ACGT 2 cut(s) 295, 609
MaeIII GTNAC 2 cut(s) 40, 116
MalI GATC 1 cut(s) 469
MboI GATC 1 cut(s) 467
MboII GAAGA 3 cut(s) 125, 383, 682
MflI RGATCY 1 cut(s) 467
MluCI AATT 2 cut(s) 352, 514
MlyI GAGTC 2 cut(s) 25, 574
MnlI CCTC 6 cut(s) 73, 253, 319, 445, 598, 616
MroXI GAANNNNTTC 1 cut(s) 132
MseI TTAA 4 cut(s) 149, 398, 506, 759
MslI CAYNNNNRTG 2 cut(s) 114, 526
MspI CCGG 1 cut(s) 45
MvnI CGCG 1 cut(s) 654
NdeII GATC 1 cut(s) 467
NlaIII CATG 1 cut(s) 525
NlaIV GGNNCC 2 cut(s) 360, 469
NmeAIII GCCGAG 1 cut(s) 187
NmuCI GTSAC 1 cut(s) 116
NspI RCATGY 1 cut(s) 525
PaeR7I CTCGAG 1 cut(s) 602
PdmI GAANNNNTTC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 60
PinAI ACCGGT 1 cut(s) 44
PkrI GCNGC 2 cut(s) 52, 709
PleI GAGTC 2 cut(s) 24, 574
PpsI GAGTC 2 cut(s) 24, 574
Ppu21I YACGTR 1 cut(s) 296
PsiI TTATAA 1 cut(s) 774
PspN4I GGNNCC 2 cut(s) 360, 469
PspPI GGNCC 1 cut(s) 210
PsuI RGATCY 1 cut(s) 467
RseI CAYNNNNRTG 2 cut(s) 114, 526
SaqAI TTAA 4 cut(s) 149, 398, 506, 759
SatI GCNGC 2 cut(s) 51, 708
Sau3AI GATC 1 cut(s) 467
Sau96I GGNCC 1 cut(s) 210
SchI GAGTC 2 cut(s) 25, 574
SfaNI GCATC 3 cut(s) 219, 429, 686
SfcI CTRYAG 1 cut(s) 441
Sfr274I CTCGAG 1 cut(s) 602
SlaI CTCGAG 1 cut(s) 602
SmiMI CAYNNNNRTG 2 cut(s) 114, 526
SmlI CTYRAG 1 cut(s) 602
SmoI CTYRAG 1 cut(s) 602
SpeI ACTAGT 1 cut(s) 682
Sse9I AATT 2 cut(s) 352, 514
SspMI CTAG 2 cut(s) 510, 683
TaaI ACNGT 2 cut(s) 238, 757
TaiI ACGT 2 cut(s) 298, 612
TaqI TCGA 1 cut(s) 603
TasI AATT 2 cut(s) 352, 514
TfiI GAWTC 1 cut(s) 60
Tru1I TTAA 4 cut(s) 149, 398, 506, 759
Tru9I TTAA 4 cut(s) 149, 398, 506, 759
TscAI CASTG 2 cut(s) 61, 760
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 2 cut(s) 50, 707
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 1 cut(s) 684
TspRI CASTG 2 cut(s) 61, 760
XapI RAATTY 2 cut(s) 352, 514
XceI RCATGY 1 cut(s) 525
XhoI CTCGAG 1 cut(s) 602
XmiI GTMKAC 2 cut(s) 19, 700
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 2 cut(s) 510, 683
ZraI GACGTC 1 cut(s) 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.