Rh7AG357400

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000208
Physical Location & Seq
Forward (+)
45847913 .. 45848981
1069 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG357400.1

Sequence Viewer

Length: 570 bp
ATGGCTCAACCAAATAATCCTACTAGCAATGACAGCAGAGATAGAAGATGGTCTCTTGAGGGAATGACTGCTCTTGTCACTGGGGGAACCAAAGGCATTGGATATGCTATTGTGGAGGAATTGGCAAGGCTAGGTGCAAAGGTCCATACTTGTTCCCGGAATGAAGTCCAACTCAATGAGCGGTTGAGTCAATGGAAGACCAAGGGTTTTAATCAAGTCACTGGTTCTGTCTGTGATTTGGTCTCAAAGCCCCAACGAGAGGAGCTCATGAAGAAGGTCTCATCACTGTTCAATGGGAAACTAAACATCCTTGTAAACAATGTGGGAACCAATATAGCAAAGCCAACAACTGACATTACAGCTGAAGATTACTCATTTCTTATGGGAACCAATCTTGACTCTTATTACAATATGTGCCAACTTGCACATCCTCTCCTCAAAACATCAGGAGCTGGTAACATTGTTCTTATATCTTCTGTTGCTGGTGTGGTAACAGTTGGGGGGATTGGAAGTGTCTACGCTGCCACTAAAGGTCTTTTTCCTAACCTAGTTTTGACTTTTCAATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

189

Amino Acids

20.42

Weight (kDa)

8.99

Isoelectric Point (pI)

27.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 23 - 178 4.3e-35 short chain dehydrogenase
KR PF08659 23 - 176 1.9e-08 KR domain
adh_short_C2 PF13561 31 - 179 4.6e-25 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 181
AccI GTMKAC 1 cut(s) 516
AciI CCGC 1 cut(s) 181
AcuI CTGAAG 1 cut(s) 384
AfiI CCNNNNNNNGG 1 cut(s) 259
AgsI TTSAA 2 cut(s) 292, 563
AluBI AGCT 3 cut(s) 265, 362, 452
AluI AGCT 3 cut(s) 265, 362, 452
Alw21I GWGCWC 1 cut(s) 267
Alw26I GTCTC 3 cut(s) 57, 247, 283
AlwNI CAGNNNCTG 1 cut(s) 452
ApeKI GCWGC 1 cut(s) 521
AspS9I GGNCC 1 cut(s) 142
AsuC2I CCSGG 1 cut(s) 157
AvaII GGWCC 1 cut(s) 142
BanII GRGCYC 1 cut(s) 267
BbsI GAAGAC 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 1 cut(s) 508
BccI CCATC 1 cut(s) 42
BcnI CCSGG 1 cut(s) 157
BcoDI GTCTC 3 cut(s) 57, 247, 283
BfaI CTAG 3 cut(s) 24, 131, 548
BisI GCNGC 1 cut(s) 522
BlsI GCNGC 1 cut(s) 523
Bme1390I CCNGG 1 cut(s) 157
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 3 cut(s) 88, 328, 388
BmrFI CCNGG 1 cut(s) 157
BmrI ACTGGG 1 cut(s) 90
BmuI ACTGGG 1 cut(s) 90
BpiI GAAGAC 1 cut(s) 203
BplI GAGNNNNNCTC 2 cut(s) 249, 281
BpuEI CTTGAG 1 cut(s) 77
BpuMI CCSGG 1 cut(s) 157
BsaI GGTCTC 3 cut(s) 57, 247, 283
BsaJI CCNNGG 1 cut(s) 201
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse1I ACTGG 2 cut(s) 85, 226
Bse3DI GCAATG 1 cut(s) 34
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 2 cut(s) 306, 427
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMI GCAATG 1 cut(s) 34
BseNI ACTGG 2 cut(s) 85, 226
BseRI GAGGAG 2 cut(s) 275, 425
BseXI GCAGC 1 cut(s) 508
BsiHKAI GWGCWC 1 cut(s) 267
BsiSI CCGG 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 3 cut(s) 57, 247, 283
Bso31I GGTCTC 3 cut(s) 57, 247, 283
Bsp1286I GDGCHC 1 cut(s) 267
BspACI CCGC 1 cut(s) 181
BspHI TCATGA 1 cut(s) 267
BspLI GGNNCC 3 cut(s) 88, 328, 388
BspTNI GGTCTC 3 cut(s) 57, 247, 283
BsrBI CCGCTC 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 34
BsrI ACTGG 2 cut(s) 85, 226
BssECI CCNNGG 1 cut(s) 201
BssT1I CCWWGG 1 cut(s) 201
Bst4CI ACNGT 2 cut(s) 288, 496
BstF5I GGATG 2 cut(s) 306, 427
BstMAI GTCTC 3 cut(s) 57, 247, 283
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstSCI CCNGG 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 508
BstV2I GAAGAC 1 cut(s) 203
BtsCI GGATG 2 cut(s) 306, 427
BtsIMutI CAGTG 3 cut(s) 78, 219, 284
CaiI CAGNNNCTG 1 cut(s) 452
CciI TCATGA 1 cut(s) 267
Cfr13I GGNCC 1 cut(s) 142
CviAII CATG 1 cut(s) 268
CviJI RGCY 7 cut(s) 5, 130, 250, 265, 343, 362, 452
CviKI_1 RGCY 7 cut(s) 5, 130, 250, 265, 343, 362, 452
Ecl136II GAGCTC 1 cut(s) 265
Eco130I CCWWGG 1 cut(s) 201
Eco24I GRGCYC 1 cut(s) 267
Eco31I GGTCTC 3 cut(s) 57, 247, 283
Eco47I GGWCC 1 cut(s) 142
Eco53kI GAGCTC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 384
EcoICRI GAGCTC 1 cut(s) 265
EcoT14I CCWWGG 1 cut(s) 201
EcoT38I GRGCYC 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 1 cut(s) 271
FaiI YATR 7 cut(s) 105, 147, 269, 335, 383, 413, 470
FatI CATG 1 cut(s) 267
FblI GTMKAC 1 cut(s) 516
Fnu4HI GCNGC 1 cut(s) 522
FokI GGATG 2 cut(s) 293, 414
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 1 cut(s) 522
FspBI CTAG 3 cut(s) 24, 131, 548
GluI GCNGC 1 cut(s) 522
HapII CCGG 1 cut(s) 157
Hin1II CATG 1 cut(s) 271
HinfI GANTC 2 cut(s) 187, 398
HpaII CCGG 1 cut(s) 157
Hpy166II GTNNAC 2 cut(s) 316, 517
Hpy188III TCNNGA 4 cut(s) 56, 268, 395, 447
Hpy8I GTNNAC 2 cut(s) 316, 517
HpyAV CCTTC 1 cut(s) 268
HpyCH4III ACNGT 2 cut(s) 288, 496
HpyCH4V TGCA 2 cut(s) 137, 425
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
Hsp92II CATG 1 cut(s) 271
LmnI GCTCC 2 cut(s) 262, 449
LpnPI CCDG 6 cut(s) 66, 170, 207, 432, 438, 468
Lsp1109I GCAGC 1 cut(s) 508
MaeI CTAG 3 cut(s) 24, 131, 548
MaeIII GTNAC 4 cut(s) 76, 217, 455, 490
MbiI CCGCTC 1 cut(s) 181
MboII GAAGA 5 cut(s) 57, 208, 283, 377, 465
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 1 cut(s) 119
MlyI GAGTC 2 cut(s) 196, 392
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 5 cut(s) 52, 109, 253, 441, 446
MseI TTAA 2 cut(s) 210, 568
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 1 cut(s) 157
MspR9I CCNGG 1 cut(s) 157
MwoI GCNNNNNNNGC 1 cut(s) 33
NciI CCSGG 1 cut(s) 157
NlaIII CATG 1 cut(s) 271
NlaIV GGNNCC 3 cut(s) 88, 328, 388
NmuCI GTSAC 2 cut(s) 76, 217
PagI TCATGA 1 cut(s) 267
PfoI TCCNGGA 1 cut(s) 155
PkrI GCNGC 1 cut(s) 523
PleI GAGTC 2 cut(s) 195, 392
PpsI GAGTC 2 cut(s) 195, 392
Psp124BI GAGCTC 1 cut(s) 267
PspN4I GGNNCC 3 cut(s) 88, 328, 388
PspPI GGNCC 1 cut(s) 142
PstNI CAGNNNCTG 1 cut(s) 452
PvuII CAGCTG 1 cut(s) 362
SacI GAGCTC 1 cut(s) 267
SaqAI TTAA 2 cut(s) 210, 568
SatI GCNGC 1 cut(s) 522
Sau96I GGNCC 1 cut(s) 142
SchI GAGTC 2 cut(s) 196, 392
ScrFI CCNGG 1 cut(s) 157
SduI GDGCHC 1 cut(s) 267
SetI ASST 8 cut(s) 136, 144, 267, 279, 364, 454, 535, 549
SinI GGWCC 1 cut(s) 142
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 1 cut(s) 119
SsiI CCGC 1 cut(s) 181
SspI AATATT 1 cut(s) 566
SspMI CTAG 3 cut(s) 24, 131, 548
SstI GAGCTC 1 cut(s) 267
StyD4I CCNGG 1 cut(s) 155
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 2 cut(s) 288, 496
TasI AATT 1 cut(s) 119
Tru1I TTAA 2 cut(s) 210, 568
Tru9I TTAA 2 cut(s) 210, 568
TscAI CASTG 3 cut(s) 85, 226, 291
TseFI GTSAC 2 cut(s) 76, 217
TseI GCWGC 1 cut(s) 521
Tsp45I GTSAC 2 cut(s) 76, 217
TspDTI ATGAA 2 cut(s) 177, 284
TspRI CASTG 3 cut(s) 85, 226, 291
VpaK11BI GGWCC 1 cut(s) 142
XmiI GTMKAC 1 cut(s) 516
XspI CTAG 3 cut(s) 24, 131, 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.